Wall clock time and date at job start Sat Apr 11 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47161 * 270.00513 * 3 2 1 5 5 H 1.48499 * 109.46824 * 30.00660 * 3 2 1 6 6 H 1.48494 * 109.46801 * 150.00038 * 3 2 1 7 7 C 1.37875 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00363 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99689 * 273.51749 * 10 9 7 12 12 C 1.52999 * 109.47136 * 269.99715 * 11 10 9 13 13 N 1.46896 * 109.47044 * 180.02562 * 12 11 10 14 14 C 1.47018 * 110.99735 * 293.63713 * 13 12 11 15 15 C 1.53104 * 109.25512 * 177.60872 * 14 13 12 16 16 O 1.43012 * 109.25916 * 56.84725 * 15 14 13 17 17 C 1.43020 * 113.73949 * 301.32803 * 16 15 14 18 18 C 1.47015 * 111.00281 * 170.00389 * 13 12 11 19 19 C 1.34772 * 119.99838 * 93.51755 * 10 9 7 20 20 O 1.21288 * 119.99721 * 184.98117 * 19 10 9 21 21 C 1.50695 * 120.00502 * 4.97939 * 19 10 9 22 22 C 1.53002 * 109.47327 * 272.29881 * 21 19 10 23 23 C 1.52996 * 109.47155 * 179.97438 * 22 21 19 24 24 C 1.52994 * 109.47375 * 59.99871 * 23 22 21 25 25 O 1.42900 * 109.47322 * 59.99798 * 24 23 22 26 26 C 1.53006 * 109.47102 * 299.99640 * 24 23 22 27 27 C 1.52993 * 109.47433 * 152.29223 * 21 19 10 28 28 H 0.96997 * 119.99993 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47356 * 60.00381 * 9 7 2 30 30 H 1.09001 * 109.47315 * 300.00119 * 9 7 2 31 31 H 1.08995 * 109.47089 * 30.00221 * 11 10 9 32 32 H 1.09006 * 109.46703 * 150.00121 * 11 10 9 33 33 H 1.09000 * 109.46878 * 300.00453 * 12 11 10 34 34 H 1.08997 * 109.46692 * 60.00518 * 12 11 10 35 35 H 1.09000 * 109.50548 * 297.53494 * 14 13 12 36 36 H 1.08993 * 109.50975 * 57.67702 * 14 13 12 37 37 H 1.09000 * 109.50786 * 296.91384 * 15 14 13 38 38 H 1.08995 * 109.54307 * 176.80401 * 15 14 13 39 39 H 1.08993 * 109.50826 * 298.73751 * 17 16 15 40 40 H 1.09006 * 109.54349 * 178.62446 * 17 16 15 41 41 H 1.09009 * 109.50121 * 302.32849 * 18 13 12 42 42 H 1.08999 * 109.50693 * 62.41036 * 18 13 12 43 43 H 1.09005 * 109.47003 * 32.29429 * 21 19 10 44 44 H 1.09005 * 109.46710 * 299.99728 * 22 21 19 45 45 H 1.08996 * 109.47382 * 59.99472 * 22 21 19 46 46 H 1.08997 * 109.47405 * 299.99376 * 23 22 21 47 47 H 1.09000 * 109.47155 * 179.97438 * 23 22 21 48 48 H 1.09005 * 109.47532 * 180.02562 * 24 23 22 49 49 H 0.96692 * 114.00104 * 60.00174 * 25 24 23 50 50 H 1.08993 * 109.47113 * 300.00465 * 26 24 23 51 51 H 1.08996 * 109.47399 * 180.02562 * 26 24 23 52 52 H 1.08997 * 109.47326 * 299.99951 * 27 21 19 53 53 H 1.09002 * 109.47116 * 60.00560 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.7382 -4.1188 -1.2669 12 6 1.8302 -5.2307 -1.7963 13 7 2.3671 -5.7386 -3.0658 14 6 2.2991 -4.7111 -4.1151 15 6 2.9218 -5.2610 -5.4012 16 8 2.2448 -6.4637 -5.7763 17 6 2.2917 -7.4862 -4.7775 18 6 1.6627 -6.9589 -3.4852 19 6 2.5865 -4.1714 1.1644 20 8 3.4415 -5.0316 1.1720 21 6 1.9530 -3.7274 2.4577 22 6 2.7216 -2.5284 3.0169 23 6 2.0780 -2.0772 4.3295 24 6 2.1199 -3.2258 5.3393 25 8 3.4781 -3.6003 5.5787 26 6 1.3513 -4.4248 4.7802 27 6 1.9954 -4.8762 3.4672 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.7806 -3.3075 -1.9936 32 1 3.7409 -4.5147 -1.1053 33 1 1.7878 -6.0419 -1.0695 34 1 0.8276 -4.8348 -1.9579 35 1 1.2577 -4.4471 -4.2990 36 1 2.8486 -3.8262 -3.7943 37 1 3.9771 -5.4750 -5.2321 38 1 2.8230 -4.5241 -6.1982 39 1 3.3286 -7.7648 -4.5902 40 1 1.7369 -8.3588 -5.1226 41 1 1.7475 -7.7147 -2.7042 42 1 0.6109 -6.7308 -3.6582 43 1 0.9169 -3.4419 2.2755 44 1 3.7577 -2.8139 3.1990 45 1 2.6914 -1.7099 2.2977 46 1 1.0421 -1.7916 4.1470 47 1 2.6258 -1.2233 4.7281 48 1 1.6610 -2.9046 6.2744 49 1 4.0257 -2.8873 5.9347 50 1 0.3154 -4.1392 4.5976 51 1 1.3807 -5.2430 5.4998 52 1 1.4478 -5.7303 3.0689 53 1 3.0314 -5.1617 3.6495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194211192.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:02 Heat of formation + Delta-G solvation = -161.367771 kcal Electronic energy + Delta-G solvation = -31806.310099 eV Core-core repulsion = 27676.350409 eV Total energy + Delta-G solvation = -4129.959690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39016 -40.53232 -39.35930 -37.44799 -36.41146 -35.79556 -34.52606 -32.26985 -31.86079 -31.51674 -30.46575 -29.03460 -27.27084 -25.06321 -24.97673 -24.42946 -23.58425 -22.80658 -21.39593 -20.81557 -19.79562 -18.49539 -18.17800 -17.80767 -17.48470 -17.21835 -17.07525 -16.49242 -16.35727 -16.20426 -16.00626 -15.91934 -15.59016 -15.20735 -14.98199 -14.69803 -14.40876 -14.22567 -14.07832 -13.83405 -13.57334 -13.46400 -13.20188 -13.05221 -12.98071 -12.97405 -12.83890 -12.62758 -12.51985 -12.35679 -12.23507 -12.04650 -11.91503 -11.87959 -11.73768 -11.50808 -11.34641 -11.07987 -10.75477 -10.73246 -10.54137 -10.34312 -9.60270 -9.41359 -8.19626 -6.31645 1.39834 1.43435 1.51540 1.74682 2.14197 2.42032 2.81268 2.96185 3.10930 3.45680 3.67111 3.79221 3.82988 3.87391 3.95874 3.96728 4.06036 4.16524 4.19757 4.24236 4.31460 4.35096 4.37285 4.41864 4.51067 4.51745 4.55737 4.63531 4.68658 4.75095 4.78573 4.82686 4.88643 4.89185 4.94397 4.98521 5.00883 5.10865 5.16185 5.22208 5.29212 5.31149 5.47928 5.55065 5.65090 5.75291 5.88870 5.89417 6.06425 6.13899 6.56678 6.81203 7.00036 7.30748 7.42180 8.86107 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.003769 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.320937 B = 7426.888881 C = 9836.126802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.030 3.970 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.254 3.746 10 N -0.599 5.599 11 C 0.128 3.872 12 C 0.062 3.938 13 N -0.539 5.539 14 C 0.012 3.988 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.066 3.934 18 C 0.016 3.984 19 C 0.516 3.484 20 O -0.594 6.594 21 C -0.094 4.094 22 C -0.100 4.100 23 C -0.142 4.142 24 C 0.108 3.892 25 O -0.580 6.580 26 C -0.110 4.110 27 C -0.089 4.089 28 H 0.267 0.733 29 H 0.013 0.987 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.037 0.963 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.388 0.612 50 H 0.088 0.912 51 H 0.080 0.920 52 H 0.055 0.945 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -8.026 1.389 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.133 3.867 10 N -0.329 5.329 11 C 0.004 3.996 12 C -0.067 4.067 13 N -0.265 5.265 14 C -0.116 4.116 15 C -0.008 4.008 16 O -0.321 6.321 17 C -0.010 4.010 18 C -0.112 4.112 19 C 0.305 3.695 20 O -0.476 6.476 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.180 4.180 24 C 0.050 3.950 25 O -0.388 6.388 26 C -0.147 4.147 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.237 0.763 50 H 0.106 0.894 51 H 0.099 0.901 52 H 0.074 0.926 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.666 -9.049 1.034 9.259 hybrid contribution -0.317 1.980 0.064 2.006 sum 1.349 -7.069 1.099 7.280 Atomic orbital electron populations 1.69994 1.07042 1.28051 1.50453 1.25497 0.95405 1.01727 0.94447 0.85716 0.78855 0.79836 0.78284 1.20375 1.20501 1.19579 1.21495 0.92952 0.91289 1.51515 0.93275 1.19135 0.87469 0.82768 0.97284 1.48212 1.45221 1.34108 1.05341 1.21147 0.97245 0.95848 0.85355 1.22205 0.95881 0.97388 0.91208 1.62155 1.55742 1.05950 1.02654 1.22914 1.00287 0.95593 0.92835 1.22737 0.95945 0.86779 0.95373 1.87942 1.77028 1.24908 1.42224 1.22784 1.01431 0.90636 0.86173 1.22874 0.96143 0.92772 0.99366 1.21070 0.81696 0.80399 0.86290 1.90566 1.34147 1.35005 1.87878 1.21247 1.00613 0.97946 0.91649 1.21315 0.98306 0.96363 0.97848 1.22191 1.02009 0.98688 0.95105 1.21829 0.82811 0.93763 0.96646 1.86505 1.22117 1.42639 1.87527 1.21603 0.99110 0.98035 0.95933 1.21213 1.01435 0.95645 0.94377 0.92361 0.96878 0.94479 0.90871 0.91360 0.91505 0.95350 0.94760 0.89466 0.91702 0.86634 0.91818 0.86134 0.88855 0.94504 0.89405 0.93097 0.91535 0.90874 0.90335 0.90286 0.76279 0.89366 0.90147 0.92618 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.49 13.29 21.45 0.28 -48.21 16 2 C 0.03 1.52 5.46 84.65 0.46 1.98 16 3 Si 0.95 40.53 29.54 68.60 2.03 42.56 16 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.53 -26.79 7.52 25.60 0.19 -26.60 16 8 H 0.05 2.56 7.81 -2.91 -0.02 2.53 16 9 C 0.25 11.87 4.99 85.63 0.43 12.30 16 10 N -0.60 -25.58 2.46 -826.15 -2.03 -27.61 16 11 C 0.13 4.95 5.40 86.38 0.47 5.41 16 12 C 0.06 2.11 5.28 86.30 0.46 2.56 16 13 N -0.54 -15.73 4.73 -895.21 -4.23 -19.96 16 14 C 0.01 0.32 5.44 86.32 0.47 0.79 16 15 C 0.07 1.55 7.01 72.02 0.50 2.05 16 16 O -0.40 -9.86 10.83 -148.98 -1.61 -11.48 16 17 C 0.07 1.37 7.01 72.01 0.50 1.87 16 18 C 0.02 0.40 5.64 86.31 0.49 0.88 16 19 C 0.52 22.09 6.75 87.66 0.59 22.68 16 20 O -0.59 -28.01 15.69 -3.05 -0.05 -28.05 16 21 C -0.09 -3.46 1.80 -11.54 -0.02 -3.48 16 22 C -0.10 -3.60 5.02 30.59 0.15 -3.45 16 23 C -0.14 -3.91 5.64 30.59 0.17 -3.74 16 24 C 0.11 2.55 3.77 30.59 0.12 2.67 16 25 O -0.58 -14.64 11.97 -148.98 -1.78 -16.42 16 26 C -0.11 -2.74 5.67 30.61 0.17 -2.56 16 27 C -0.09 -2.88 4.63 30.61 0.14 -2.73 16 28 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 29 H 0.01 0.66 8.10 -2.39 -0.02 0.64 16 30 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 31 H 0.07 2.84 6.45 -2.39 -0.02 2.82 16 32 H 0.07 2.81 7.36 -2.38 -0.02 2.79 16 33 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 34 H 0.03 1.00 8.12 -2.39 -0.02 0.99 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 2.44 6.38 -2.39 -0.02 2.43 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.09 2.08 8.09 -2.38 -0.02 2.06 16 42 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 3.30 6.06 -2.38 -0.01 3.29 16 44 H 0.05 1.91 7.68 -2.38 -0.02 1.89 16 45 H 0.07 2.80 6.03 -2.39 -0.01 2.78 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.39 6.65 9.08 -74.06 -0.67 5.98 16 50 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 53 H 0.06 2.10 7.40 -2.39 -0.02 2.08 16 Total: -1.00 -63.12 405.09 -1.88 -65.00 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.22 Total: 33.54 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.30 Total: 10.64 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -5.98 Total: -95.78 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -3.44 Total: -55.95 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -63.12 -1.88 -65.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194211192.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.367 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds