Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 103.00188 * 2 1 4 4 H 1.09007 * 109.46743 * 54.99785 * 3 2 1 5 5 C 1.53001 * 109.46998 * 295.00324 * 3 2 1 6 6 C 1.52996 * 109.47013 * 174.99759 * 3 2 1 7 7 C 1.50701 * 109.47474 * 295.00080 * 6 3 2 8 8 O 1.21275 * 119.99623 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00187 * 179.97438 * 7 6 3 10 10 C 1.46922 * 120.63327 * 179.97438 * 9 7 6 11 11 C 1.53186 * 108.77761 * 233.63330 * 10 9 7 12 12 C 1.53045 * 109.31287 * 305.36303 * 11 10 9 13 13 C 1.53001 * 109.45894 * 181.38413 * 12 11 10 14 14 H 1.09002 * 110.88909 * 300.70377 * 13 12 11 15 15 C 1.55157 * 111.03508 * 176.79981 * 13 12 11 16 16 C 1.54332 * 102.94104 * 206.41168 * 15 13 12 17 17 N 1.47019 * 107.26809 * 22.19421 * 16 15 13 18 18 C 1.36941 * 125.64540 * 181.02825 * 17 16 15 19 19 H 1.07995 * 120.00072 * 180.02562 * 18 17 16 20 20 C 1.38818 * 119.99720 * 0.03273 * 18 17 16 21 21 N 1.31618 * 120.00095 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99520 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47336 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46917 * 120.00512 * 22 20 18 25 25 H 1.48506 * 109.46706 * 240.00066 * 22 20 18 26 26 C 1.47418 * 108.70625 * 1.05636 * 17 16 15 27 27 C 1.53043 * 109.53600 * 61.37001 * 12 11 10 28 28 C 1.46927 * 120.62896 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46948 * 300.00088 * 1 2 3 31 31 H 1.08996 * 109.46940 * 59.99749 * 1 2 3 32 32 H 1.09001 * 109.46518 * 299.99233 * 5 3 2 33 33 H 1.08998 * 109.47356 * 59.99690 * 5 3 2 34 34 H 1.08998 * 109.46858 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46620 * 174.99965 * 6 3 2 36 36 H 1.08998 * 109.46910 * 55.00690 * 6 3 2 37 37 H 1.09001 * 109.58428 * 113.84529 * 10 9 7 38 38 H 1.09004 * 109.58564 * 353.42218 * 10 9 7 39 39 H 1.09001 * 109.49859 * 185.41418 * 11 10 9 40 40 H 1.08998 * 109.52736 * 65.33278 * 11 10 9 41 41 H 1.08996 * 109.46310 * 301.35962 * 12 11 10 42 42 H 1.09000 * 110.71794 * 324.77408 * 15 13 12 43 43 H 1.08996 * 110.72326 * 88.04394 * 15 13 12 44 44 H 1.08993 * 109.88239 * 262.77257 * 16 15 13 45 45 H 1.09003 * 110.01003 * 141.68082 * 16 15 13 46 46 H 0.97002 * 119.99710 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.36673 * 217.03608 * 26 17 16 48 48 H 1.09000 * 110.46196 * 94.76525 * 26 17 16 49 49 H 1.08996 * 109.50091 * 58.58361 * 27 12 11 50 50 H 1.08996 * 109.49397 * 178.68827 * 27 12 11 51 51 H 1.09000 * 109.59070 * 246.15693 * 28 9 7 52 52 H 1.09004 * 109.58936 * 6.57745 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4015 -1.3073 6 6 3.7370 1.9410 0.1258 7 6 4.1920 1.4268 1.4673 8 8 3.3842 0.9664 2.2459 9 7 5.4967 1.4777 1.8014 10 6 5.9554 0.9808 3.1057 11 6 6.7586 2.0854 3.7994 12 6 7.8843 2.5508 2.8728 13 6 8.7100 3.6300 3.5760 14 1 8.0868 4.4834 3.8435 15 6 9.9114 4.0717 2.6992 16 6 10.9363 4.5670 3.7413 17 7 10.5950 3.9345 5.0239 18 6 11.2519 4.1292 6.2096 19 1 10.9222 3.6151 7.1003 20 6 12.3413 4.9876 6.2665 21 7 12.7426 5.6146 5.1811 22 14 13.2378 5.2527 7.8838 23 1 12.5949 4.4376 8.9456 24 1 14.6572 4.8418 7.7361 25 1 13.1744 6.6892 8.2552 26 6 9.4290 3.0553 4.8220 27 6 7.2846 3.1246 1.5871 28 6 6.4872 2.0322 0.8685 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 2.2355 1.9149 -2.1491 33 1 0.6636 2.2778 -1.3969 34 1 1.9884 3.4635 -1.3075 35 1 3.9902 2.9975 0.0366 36 1 4.2339 1.3803 -0.6659 37 1 6.5879 0.1049 2.9611 38 1 5.0943 0.7151 3.7189 39 1 7.1856 1.6984 4.7247 40 1 6.1025 2.9260 4.0253 41 1 8.5262 1.7046 2.6278 42 1 10.3100 3.2269 2.1375 43 1 9.6223 4.8804 2.0280 44 1 10.8754 5.6512 3.8349 45 1 11.9432 4.2769 3.4413 46 1 13.5037 6.2147 5.2211 47 1 8.7711 3.0923 5.6903 48 1 9.7518 2.0311 4.6349 49 1 6.6231 3.9552 1.8333 50 1 8.0858 3.4771 0.9377 51 1 7.1631 1.2422 0.5411 52 1 5.9770 2.4601 0.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754536582.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = -25.807631 kcal Electronic energy + Delta-G solvation = -27998.679600 eV Core-core repulsion = 24317.351110 eV Total energy + Delta-G solvation = -3681.328491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.40239 -38.48810 -36.65138 -34.93635 -33.70326 -31.85541 -31.32198 -29.55049 -29.14547 -28.36466 -27.36392 -25.20216 -23.80546 -23.30338 -22.38272 -20.86686 -19.86606 -19.50112 -19.06148 -17.33340 -16.91018 -16.78503 -16.19479 -15.62792 -14.95975 -14.79859 -14.51199 -14.45541 -14.21517 -14.03634 -13.93175 -13.78492 -13.44478 -13.24318 -13.06198 -12.79841 -12.54070 -12.41668 -12.30466 -12.16067 -11.98974 -11.77129 -11.72535 -11.59523 -11.27306 -11.03136 -10.98945 -10.85339 -10.70342 -10.52117 -10.08797 -10.05655 -9.92880 -9.79674 -9.73571 -9.67610 -9.56160 -8.68579 -8.57214 -7.71467 -6.78298 -5.68258 -3.01008 1.43806 2.32692 2.55453 2.85746 3.40982 3.46576 3.48986 4.17145 4.22085 4.51692 4.63108 4.71103 4.76406 4.82380 4.83889 4.87782 4.89956 5.03559 5.07041 5.12949 5.18033 5.22165 5.32887 5.37695 5.45656 5.49854 5.51678 5.61473 5.63237 5.67750 5.71379 5.72518 5.86812 5.93294 6.00757 6.05339 6.17425 6.22691 6.35905 6.47366 6.50207 6.59637 6.64543 6.80435 7.03690 7.30002 7.60446 7.67663 7.86616 8.09285 8.30253 9.26127 9.86855 10.53519 11.43548 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034654 B = 0.001916 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.782674 B =14612.179681 C =15069.462723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.240 6.240 3 C -0.044 4.044 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.123 4.123 7 C 0.510 3.490 8 O -0.523 6.523 9 N -0.611 5.611 10 C 0.113 3.887 11 C -0.129 4.129 12 C -0.073 4.073 13 C -0.096 4.096 14 H 0.070 0.930 15 C -0.138 4.138 16 C 0.177 3.823 17 N -0.607 5.607 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.142 3.858 27 C -0.129 4.129 28 C 0.106 3.894 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.250 0.750 47 H 0.035 0.965 48 H 0.016 0.984 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.633 -7.697 -16.112 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.014 6.014 3 C -0.174 4.174 4 H 0.112 0.888 5 C -0.207 4.207 6 C -0.164 4.164 7 C 0.297 3.703 8 O -0.398 6.398 9 N -0.345 5.345 10 C -0.009 4.009 11 C -0.167 4.167 12 C -0.092 4.092 13 C -0.115 4.115 14 H 0.089 0.911 15 C -0.176 4.176 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.016 3.984 27 C -0.167 4.167 28 C -0.017 4.017 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.034 0.966 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.088 0.912 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.216 -8.708 -15.588 27.730 hybrid contribution -0.122 1.334 0.817 1.569 sum -21.338 -7.375 -14.771 26.980 Atomic orbital electron populations 1.23374 0.95016 1.06225 1.04600 1.86938 1.06533 1.10182 1.97726 1.22885 0.97833 0.95177 1.01469 0.88839 1.22112 1.01554 1.00997 0.96059 1.21560 0.94476 1.03644 0.96746 1.20432 0.81940 0.79006 0.88931 1.90739 1.52199 1.45007 1.51896 1.48124 1.06646 1.61981 1.17780 1.21626 0.99240 0.96324 0.83725 1.21983 0.97193 0.98488 0.99004 1.21088 0.95765 0.98256 0.94105 1.22346 0.95547 0.97051 0.96583 0.91117 1.22896 0.96802 0.99649 0.98249 1.21128 0.94255 0.96649 0.82789 1.44502 1.32172 1.50379 1.06295 1.19120 1.08219 1.21647 0.86375 0.90483 1.24805 0.98852 0.99622 0.97417 1.69986 1.28270 1.32731 1.26081 0.86056 0.79513 0.77522 0.82773 1.20526 1.21803 1.21816 1.21551 0.89116 0.93267 0.94463 1.21971 0.99590 0.97582 0.97559 1.21805 0.91234 0.96755 0.91880 0.88342 0.90566 0.90839 0.91187 0.92223 0.91478 0.87539 0.88137 0.91639 0.89178 0.90238 0.91698 0.91044 0.92664 0.92551 0.93873 0.94199 0.93912 0.94712 0.96607 0.91610 0.90240 0.91199 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.45 101.05 1.06 0.19 16 2 S -0.24 -2.42 20.24 -107.50 -2.18 -4.59 16 3 C -0.04 -0.36 2.44 -26.73 -0.07 -0.43 16 4 H 0.09 0.87 7.96 -51.92 -0.41 0.46 16 5 C -0.15 -0.82 9.10 37.16 0.34 -0.48 16 6 C -0.12 -0.96 3.52 -27.88 -0.10 -1.06 16 7 C 0.51 5.79 7.41 -10.99 -0.08 5.71 16 8 O -0.52 -7.74 14.20 5.56 0.08 -7.66 16 9 N -0.61 -6.45 2.97 -172.79 -0.51 -6.96 16 10 C 0.11 1.28 6.43 -3.72 -0.02 1.26 16 11 C -0.13 -1.54 5.21 -26.61 -0.14 -1.68 16 12 C -0.07 -0.91 1.65 -90.57 -0.15 -1.06 16 13 C -0.10 -1.57 2.56 -88.47 -0.23 -1.80 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.14 -2.45 5.42 -24.89 -0.14 -2.58 16 16 C 0.18 4.29 5.38 -3.06 -0.02 4.27 16 17 N -0.61 -15.64 3.39 -170.08 -0.58 -16.22 16 18 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -27.42 10.31 55.49 0.57 -26.84 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.14 2.89 5.80 -2.53 -0.01 2.88 16 27 C -0.13 -1.28 5.20 -26.63 -0.14 -1.42 16 28 C 0.11 0.89 6.34 -3.73 -0.02 0.86 16 29 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.40 7.14 -51.93 -0.37 0.03 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.31 6.92 -51.93 -0.36 -0.05 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.11 0.61 7.69 -51.93 -0.40 0.22 16 36 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 39 H 0.08 0.99 7.32 -51.93 -0.38 0.61 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 42 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 43 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.04 1.17 7.38 -51.93 -0.38 0.78 16 45 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 48 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.76 7.32 -51.93 -0.38 0.38 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.08 0.49 5.93 -51.93 -0.31 0.18 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -33.26 404.52 -11.12 -44.38 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -9.60 Total: -3.26 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 0.03 Total: -2.28 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.52 Total: -50.02 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.08 Total: -7.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.18 Total: -4.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.26 -11.12 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754536582.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.568 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds