Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 103.00188 * 2 1 4 4 H 1.09007 * 109.46743 * 54.99785 * 3 2 1 5 5 C 1.53001 * 109.46998 * 295.00324 * 3 2 1 6 6 C 1.52996 * 109.47013 * 174.99759 * 3 2 1 7 7 C 1.50701 * 109.47474 * 295.00080 * 6 3 2 8 8 O 1.21275 * 119.99623 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00187 * 179.97438 * 7 6 3 10 10 C 1.46922 * 120.63327 * 179.97438 * 9 7 6 11 11 C 1.53186 * 108.77761 * 233.63330 * 10 9 7 12 12 C 1.53045 * 109.31287 * 305.36303 * 11 10 9 13 13 C 1.53001 * 109.45894 * 181.38413 * 12 11 10 14 14 H 1.09002 * 110.88909 * 300.70377 * 13 12 11 15 15 C 1.55157 * 111.03508 * 176.79981 * 13 12 11 16 16 C 1.54332 * 102.94104 * 206.41168 * 15 13 12 17 17 N 1.47019 * 107.26809 * 22.19421 * 16 15 13 18 18 C 1.36941 * 125.64540 * 181.02825 * 17 16 15 19 19 H 1.07995 * 120.00072 * 180.02562 * 18 17 16 20 20 C 1.38818 * 119.99720 * 0.03273 * 18 17 16 21 21 N 1.31618 * 120.00095 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99520 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47336 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46917 * 120.00512 * 22 20 18 25 25 H 1.48506 * 109.46706 * 240.00066 * 22 20 18 26 26 C 1.47418 * 108.70625 * 1.05636 * 17 16 15 27 27 C 1.53043 * 109.53600 * 61.37001 * 12 11 10 28 28 C 1.46927 * 120.62896 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46948 * 300.00088 * 1 2 3 31 31 H 1.08996 * 109.46940 * 59.99749 * 1 2 3 32 32 H 1.09001 * 109.46518 * 299.99233 * 5 3 2 33 33 H 1.08998 * 109.47356 * 59.99690 * 5 3 2 34 34 H 1.08998 * 109.46858 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46620 * 174.99965 * 6 3 2 36 36 H 1.08998 * 109.46910 * 55.00690 * 6 3 2 37 37 H 1.09001 * 109.58428 * 113.84529 * 10 9 7 38 38 H 1.09004 * 109.58564 * 353.42218 * 10 9 7 39 39 H 1.09001 * 109.49859 * 185.41418 * 11 10 9 40 40 H 1.08998 * 109.52736 * 65.33278 * 11 10 9 41 41 H 1.08996 * 109.46310 * 301.35962 * 12 11 10 42 42 H 1.09000 * 110.71794 * 324.77408 * 15 13 12 43 43 H 1.08996 * 110.72326 * 88.04394 * 15 13 12 44 44 H 1.08993 * 109.88239 * 262.77257 * 16 15 13 45 45 H 1.09003 * 110.01003 * 141.68082 * 16 15 13 46 46 H 0.97002 * 119.99710 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.36673 * 217.03608 * 26 17 16 48 48 H 1.09000 * 110.46196 * 94.76525 * 26 17 16 49 49 H 1.08996 * 109.50091 * 58.58361 * 27 12 11 50 50 H 1.08996 * 109.49397 * 178.68827 * 27 12 11 51 51 H 1.09000 * 109.59070 * 246.15693 * 28 9 7 52 52 H 1.09004 * 109.58936 * 6.57745 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4015 -1.3073 6 6 3.7370 1.9410 0.1258 7 6 4.1920 1.4268 1.4673 8 8 3.3842 0.9664 2.2459 9 7 5.4967 1.4777 1.8014 10 6 5.9554 0.9808 3.1057 11 6 6.7586 2.0854 3.7994 12 6 7.8843 2.5508 2.8728 13 6 8.7100 3.6300 3.5760 14 1 8.0868 4.4834 3.8435 15 6 9.9114 4.0717 2.6992 16 6 10.9363 4.5670 3.7413 17 7 10.5950 3.9345 5.0239 18 6 11.2519 4.1292 6.2096 19 1 10.9222 3.6151 7.1003 20 6 12.3413 4.9876 6.2665 21 7 12.7426 5.6146 5.1811 22 14 13.2378 5.2527 7.8838 23 1 12.5949 4.4376 8.9456 24 1 14.6572 4.8418 7.7361 25 1 13.1744 6.6892 8.2552 26 6 9.4290 3.0553 4.8220 27 6 7.2846 3.1246 1.5871 28 6 6.4872 2.0322 0.8685 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 2.2355 1.9149 -2.1491 33 1 0.6636 2.2778 -1.3969 34 1 1.9884 3.4635 -1.3075 35 1 3.9902 2.9975 0.0366 36 1 4.2339 1.3803 -0.6659 37 1 6.5879 0.1049 2.9611 38 1 5.0943 0.7151 3.7189 39 1 7.1856 1.6984 4.7247 40 1 6.1025 2.9260 4.0253 41 1 8.5262 1.7046 2.6278 42 1 10.3100 3.2269 2.1375 43 1 9.6223 4.8804 2.0280 44 1 10.8754 5.6512 3.8349 45 1 11.9432 4.2769 3.4413 46 1 13.5037 6.2147 5.2211 47 1 8.7711 3.0923 5.6903 48 1 9.7518 2.0311 4.6349 49 1 6.6231 3.9552 1.8333 50 1 8.0858 3.4771 0.9377 51 1 7.1631 1.2422 0.5411 52 1 5.9770 2.4601 0.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754536582.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -44.257951 kcal Electronic energy + Delta-G solvation = -27999.479666 eV Core-core repulsion = 24317.351110 eV Total energy + Delta-G solvation = -3682.128556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27141 -39.75355 -37.94628 -35.55424 -35.17848 -33.46458 -32.24560 -30.88442 -30.16700 -29.39790 -28.40230 -26.83980 -25.09905 -24.25099 -23.10046 -21.91984 -21.65776 -20.81989 -19.88410 -18.83681 -18.12258 -17.57905 -16.98493 -16.79707 -16.44085 -16.18264 -15.74090 -15.39288 -15.23690 -15.09806 -14.80096 -14.53553 -14.28145 -14.16068 -14.10132 -13.81424 -13.76998 -13.60063 -13.43303 -13.21076 -13.06529 -12.89878 -12.83135 -12.74811 -12.33876 -12.29033 -12.25227 -12.11129 -12.00985 -11.95538 -11.80307 -11.60252 -11.31649 -11.10021 -11.01000 -10.74524 -10.71014 -10.61882 -9.54692 -8.87547 -8.45189 -7.85229 -5.20041 0.83046 1.43987 1.44947 1.55426 1.72150 1.74432 2.09192 2.48848 3.32357 3.50467 3.63437 3.65086 3.76127 3.86773 3.95986 4.14592 4.19088 4.23165 4.29995 4.32133 4.33793 4.36158 4.45800 4.47981 4.52280 4.57391 4.64896 4.68271 4.75333 4.78918 4.86113 4.88896 4.90276 4.94262 5.01442 5.01830 5.06624 5.10448 5.15638 5.21406 5.28163 5.34924 5.43510 5.46971 5.62768 5.66219 5.73777 5.81919 6.21785 6.51472 7.11749 7.28001 7.80162 8.44451 9.25215 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034654 B = 0.001916 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.782674 B =14612.179681 C =15069.462723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.309 6.309 3 C -0.032 4.032 4 H 0.076 0.924 5 C -0.141 4.141 6 C -0.119 4.119 7 C 0.502 3.498 8 O -0.566 6.566 9 N -0.612 5.612 10 C 0.117 3.883 11 C -0.121 4.121 12 C -0.064 4.064 13 C -0.077 4.077 14 H 0.064 0.936 15 C -0.120 4.120 16 C 0.181 3.819 17 N -0.631 5.631 18 C -0.241 4.241 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.136 3.864 27 C -0.124 4.124 28 C 0.107 3.893 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.005 0.995 45 H 0.002 0.998 46 H 0.246 0.754 47 H 0.032 0.968 48 H 0.022 0.978 49 H 0.064 0.936 50 H 0.092 0.908 51 H 0.081 0.919 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.843 -7.759 -18.117 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.083 6.083 3 C -0.161 4.161 4 H 0.094 0.906 5 C -0.200 4.200 6 C -0.159 4.159 7 C 0.291 3.709 8 O -0.445 6.445 9 N -0.346 5.346 10 C -0.005 4.005 11 C -0.159 4.159 12 C -0.083 4.083 13 C -0.097 4.097 14 H 0.082 0.918 15 C -0.158 4.158 16 C 0.056 3.944 17 N -0.358 5.358 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.011 3.989 27 C -0.162 4.162 28 C -0.015 4.015 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.024 0.976 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.040 0.960 49 H 0.083 0.917 50 H 0.110 0.890 51 H 0.099 0.901 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.442 -8.786 -17.610 29.849 hybrid contribution 0.235 1.327 1.496 2.014 sum -22.208 -7.459 -16.114 28.434 Atomic orbital electron populations 1.23368 0.92186 1.06910 1.05325 1.87109 1.09933 1.13436 1.97865 1.22900 0.98086 0.92880 1.02272 0.90566 1.22073 1.01746 1.01702 0.94511 1.21650 0.94201 1.05297 0.94748 1.21109 0.81676 0.78250 0.89832 1.90722 1.53339 1.46925 1.53493 1.48244 1.07056 1.61631 1.17621 1.21469 0.98453 0.96300 0.84320 1.21879 0.96955 0.98363 0.98753 1.21001 0.95272 0.96946 0.95053 1.22211 0.95075 0.97817 0.94577 0.91772 1.22751 0.95141 1.00983 0.96885 1.20946 0.94593 0.94585 0.84307 1.44862 1.33568 1.51232 1.06103 1.19506 1.08520 1.21393 0.87639 0.90297 1.25666 0.99947 0.99838 1.00805 1.70210 1.28540 1.33332 1.27988 0.85016 0.77973 0.77236 0.79171 1.19096 1.21825 1.21856 1.21769 0.87794 0.92843 0.96479 1.21938 1.00063 0.97988 0.96244 1.21986 0.90986 0.96575 0.91961 0.87746 0.90868 0.88984 0.90598 0.91968 0.89758 0.84678 0.86465 0.90865 0.90968 0.91149 0.92543 0.90615 0.90805 0.89997 0.97645 0.97985 0.94480 0.94934 0.95979 0.91684 0.88952 0.90078 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.45 113.37 1.19 -0.25 16 2 S -0.31 -6.02 20.24 -56.49 -1.14 -7.17 16 3 C -0.03 -0.47 2.44 30.59 0.07 -0.39 16 4 H 0.08 1.35 7.96 -2.39 -0.02 1.33 16 5 C -0.14 -1.14 9.10 71.98 0.66 -0.49 16 6 C -0.12 -1.49 3.52 29.85 0.11 -1.38 16 7 C 0.50 10.57 7.41 87.66 0.65 11.22 16 8 O -0.57 -16.74 14.20 -3.01 -0.04 -16.78 16 9 N -0.61 -11.49 2.97 -818.99 -2.43 -13.92 16 10 C 0.12 2.53 6.43 86.36 0.56 3.09 16 11 C -0.12 -2.76 5.21 30.67 0.16 -2.60 16 12 C -0.06 -1.42 1.65 -10.76 -0.02 -1.44 16 13 C -0.08 -2.42 2.56 -9.40 -0.02 -2.44 16 14 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 15 C -0.12 -4.05 5.42 31.79 0.17 -3.88 16 16 C 0.18 8.98 5.38 86.73 0.47 9.45 16 17 N -0.63 -33.14 3.39 -692.00 -2.35 -35.49 16 18 C -0.24 -13.93 10.28 84.03 0.86 -13.06 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 21 N -0.95 -58.41 10.31 21.65 0.22 -58.18 16 22 Si 0.98 46.78 29.55 68.60 2.03 48.80 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 C 0.14 5.50 5.80 86.86 0.50 6.00 16 27 C -0.12 -2.00 5.20 30.66 0.16 -1.84 16 28 C 0.11 1.34 6.34 86.35 0.55 1.89 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.84 7.14 -2.39 -0.02 0.82 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.48 6.92 -2.39 -0.02 0.46 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.14 0.94 7.69 -2.38 -0.02 0.92 16 36 H 0.12 1.13 7.94 -2.39 -0.02 1.11 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.84 7.01 -2.38 -0.02 1.82 16 39 H 0.07 1.71 7.32 -2.39 -0.02 1.70 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 42 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 43 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 44 H 0.01 0.30 7.38 -2.39 -0.02 0.28 16 45 H 0.00 0.11 7.50 -2.39 -0.02 0.09 16 46 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 47 H 0.03 1.31 8.02 -2.39 -0.02 1.30 16 48 H 0.02 0.88 8.03 -2.39 -0.02 0.87 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.09 1.32 7.32 -2.39 -0.02 1.30 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.11 0.76 5.93 -2.38 -0.01 0.74 16 Total: -1.00 -76.56 404.52 3.67 -72.90 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.86 Total: 9.57 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.52 Total: 0.27 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.56 Total: -107.59 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.04 Total: -16.78 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: -6.02 SS G_CDS: -1.14 Total: -7.17 kcal Total: -76.56 3.67 -72.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754536582.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.639 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds