Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81397 * 103.00134 * 2 1 4 4 H 1.09007 * 109.47238 * 305.00662 * 3 2 1 5 5 C 1.53001 * 109.47052 * 64.99872 * 3 2 1 6 6 C 1.52991 * 109.47468 * 185.00061 * 3 2 1 7 7 C 1.50701 * 109.47406 * 65.00187 * 6 3 2 8 8 O 1.21292 * 119.99673 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00651 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.63412 * 179.97438 * 9 7 6 11 11 C 1.53189 * 108.77885 * 233.58773 * 10 9 7 12 12 C 1.53044 * 109.31097 * 305.36388 * 11 10 9 13 13 C 1.53002 * 109.46157 * 181.38632 * 12 11 10 14 14 H 1.09000 * 110.88252 * 302.39927 * 13 12 11 15 15 C 1.55155 * 111.03683 * 66.30417 * 13 12 11 16 16 C 1.54337 * 103.02124 * 153.39881 * 15 13 12 17 17 N 1.47022 * 107.26372 * 338.14006 * 16 15 13 18 18 C 1.36932 * 125.64698 * 178.85099 * 17 16 15 19 19 H 1.08006 * 119.99571 * 169.55355 * 18 17 16 20 20 C 1.38810 * 120.00088 * 349.55176 * 18 17 16 21 21 N 1.31621 * 119.99846 * 152.80113 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 332.80327 * 20 18 17 23 23 H 1.48499 * 109.47129 * 85.29201 * 22 20 18 24 24 H 1.48503 * 109.47091 * 205.29245 * 22 20 18 25 25 H 1.48498 * 109.46868 * 325.29354 * 22 20 18 26 26 C 1.47432 * 108.70275 * 358.58536 * 17 16 15 27 27 C 1.53042 * 109.52764 * 61.37021 * 12 11 10 28 28 C 1.46924 * 120.63019 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47772 * 59.99939 * 1 2 3 30 30 H 1.08999 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47440 * 299.99594 * 1 2 3 32 32 H 1.09008 * 109.46972 * 60.00347 * 5 3 2 33 33 H 1.09001 * 109.47179 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47643 * 299.99940 * 5 3 2 35 35 H 1.08998 * 109.47385 * 305.00246 * 6 3 2 36 36 H 1.09001 * 109.47697 * 185.00086 * 6 3 2 37 37 H 1.09003 * 109.58624 * 113.79543 * 10 9 7 38 38 H 1.09003 * 109.70216 * 353.44890 * 10 9 7 39 39 H 1.09003 * 109.49914 * 185.41534 * 11 10 9 40 40 H 1.09002 * 109.52215 * 65.33064 * 11 10 9 41 41 H 1.09000 * 109.46104 * 301.35717 * 12 11 10 42 42 H 1.09008 * 110.71923 * 271.95609 * 15 13 12 43 43 H 1.09002 * 110.72269 * 35.22504 * 15 13 12 44 44 H 1.08997 * 109.99116 * 218.66767 * 16 15 13 45 45 H 1.09002 * 109.77782 * 97.49100 * 16 15 13 46 46 H 0.97001 * 119.99981 * 5.05460 * 21 20 18 47 47 H 1.08995 * 110.36373 * 143.19582 * 26 17 16 48 48 H 1.08999 * 110.36650 * 265.40827 * 26 17 16 49 49 H 1.09004 * 109.49302 * 58.57683 * 27 12 11 50 50 H 1.08994 * 109.49618 * 178.67334 * 27 12 11 51 51 H 1.09005 * 109.58548 * 246.20613 * 28 9 7 52 52 H 1.09000 * 109.58379 * 6.47950 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7293 2.2542 -0.8418 5 6 1.7427 2.4015 1.3074 6 6 3.7368 1.9412 -0.1257 7 6 4.1919 1.4271 -1.4673 8 8 3.3840 0.9665 -2.2460 9 7 5.4965 1.4780 -1.8014 10 6 5.9554 0.9802 -3.1053 11 6 7.0782 -0.0367 -2.8776 12 6 8.1773 0.6048 -2.0276 13 6 9.3165 -0.3966 -1.8270 14 1 8.9521 -1.3110 -1.3588 15 6 10.0296 -0.7054 -3.1699 16 6 11.4519 -1.1062 -2.7243 17 7 11.6684 -0.5325 -1.3881 18 6 12.8004 -0.6771 -0.6313 19 1 12.9331 -0.0829 0.2607 20 6 13.7772 -1.5874 -1.0107 21 7 15.0316 -1.3888 -0.6651 22 14 13.3116 -3.0942 -2.0118 23 1 13.2893 -2.7425 -3.4544 24 1 14.3086 -4.1701 -1.7799 25 1 11.9667 -3.5677 -1.5970 26 6 10.4673 0.2297 -1.0005 27 6 7.6037 1.0040 -0.6661 28 6 6.4870 2.0325 -0.8686 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2354 1.9149 2.1492 33 1 1.9883 3.4635 1.3076 34 1 0.6635 2.2779 1.3970 35 1 4.2338 1.3804 0.6658 36 1 3.9901 2.9976 -0.0366 37 1 6.3306 1.8114 -3.7024 38 1 5.1277 0.4999 -3.6273 39 1 7.4929 -0.3421 -3.8383 40 1 6.6800 -0.9091 -2.3594 41 1 8.5582 1.4911 -2.5351 42 1 9.5383 -1.5298 -3.6869 43 1 10.0631 0.1822 -3.8018 44 1 12.1875 -0.7072 -3.4226 45 1 11.5317 -2.1923 -2.6787 46 1 15.2631 -0.6472 -0.0843 47 1 10.2738 0.1161 0.0661 48 1 10.5885 1.2830 -1.2533 49 1 7.2001 0.1220 -0.1687 50 1 8.3923 1.4394 -0.0525 51 1 6.9057 2.9497 -1.2829 52 1 6.0086 2.2482 0.0867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754536583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = -20.636120 kcal Electronic energy + Delta-G solvation = -28194.352889 eV Core-core repulsion = 24513.248653 eV Total energy + Delta-G solvation = -3681.104237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.47701 -38.68598 -36.89444 -34.97073 -33.82747 -32.08160 -31.44778 -29.78612 -29.32883 -28.37550 -27.92036 -25.18553 -23.66964 -23.26538 -22.32859 -21.03999 -20.37329 -19.64021 -19.13253 -17.39830 -17.32121 -16.97961 -16.24101 -15.66449 -15.33058 -14.93730 -14.84728 -14.52805 -14.41246 -14.13689 -13.91108 -13.60412 -13.52059 -13.18845 -13.17609 -13.07675 -12.85880 -12.64704 -12.55616 -12.37770 -12.23533 -11.83818 -11.80128 -11.60792 -11.41051 -11.22666 -11.12682 -10.99244 -10.85323 -10.53705 -10.33966 -10.09351 -10.02152 -9.95787 -9.83701 -9.51871 -9.10201 -8.76703 -8.37689 -7.71966 -7.05396 -6.29947 -3.13878 1.42669 2.31772 2.49355 2.79352 3.45226 3.54380 3.72547 4.12607 4.19329 4.55225 4.62952 4.63993 4.69090 4.75726 4.80706 4.82107 4.86930 4.95643 5.00071 5.07780 5.10363 5.12080 5.15892 5.26694 5.33238 5.35958 5.41483 5.46722 5.51188 5.56120 5.60802 5.62420 5.66286 5.75172 5.83916 5.92164 6.00153 6.03320 6.10347 6.26543 6.28956 6.40266 6.40970 6.55520 6.63947 6.83917 6.88328 7.22901 7.76335 8.02994 8.37686 9.07727 9.64640 10.31985 11.18298 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.002164 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.250556 B =12936.081431 C =13020.552224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.236 6.236 3 C -0.045 4.045 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.124 4.124 7 C 0.510 3.490 8 O -0.523 6.523 9 N -0.611 5.611 10 C 0.113 3.887 11 C -0.128 4.128 12 C -0.073 4.073 13 C -0.100 4.100 14 H 0.075 0.925 15 C -0.123 4.123 16 C 0.116 3.884 17 N -0.611 5.611 18 C -0.329 4.329 19 H 0.075 0.925 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.071 2.929 23 H -0.294 1.294 24 H -0.301 1.301 25 H -0.294 1.294 26 C 0.142 3.858 27 C -0.131 4.131 28 C 0.106 3.894 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.262 0.738 47 H 0.040 0.960 48 H 0.023 0.977 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.070 0.930 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.786 9.545 0.589 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.011 6.011 3 C -0.174 4.174 4 H 0.111 0.889 5 C -0.208 4.208 6 C -0.165 4.165 7 C 0.298 3.702 8 O -0.398 6.398 9 N -0.346 5.346 10 C -0.009 4.009 11 C -0.167 4.167 12 C -0.092 4.092 13 C -0.119 4.119 14 H 0.093 0.907 15 C -0.161 4.161 16 C -0.009 4.009 17 N -0.338 5.338 18 C -0.457 4.457 19 H 0.093 0.907 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.905 3.095 23 H -0.222 1.222 24 H -0.229 1.229 25 H -0.222 1.222 26 C 0.016 3.984 27 C -0.170 4.170 28 C -0.016 4.016 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.040 0.960 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.088 0.912 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.832 7.092 -0.538 28.726 hybrid contribution -1.335 2.314 0.866 2.808 sum -29.167 9.406 0.327 30.647 Atomic orbital electron populations 1.23379 0.95106 1.06270 1.04538 1.87040 1.06410 1.09890 1.97711 1.22878 0.97760 0.95371 1.01408 0.88920 1.22116 1.01584 1.00921 0.96134 1.21562 0.94550 1.03573 0.96787 1.20453 0.81963 0.78934 0.88898 1.90741 1.52264 1.44905 1.51935 1.48124 1.06577 1.62057 1.17825 1.21595 0.97850 0.97261 0.84173 1.21976 0.95298 0.98324 1.01055 1.21079 0.94455 0.98435 0.95189 1.22433 0.94302 0.98256 0.96935 0.90705 1.22602 0.96036 1.00727 0.96704 1.21640 0.94437 0.96505 0.88296 1.44801 1.14389 1.60256 1.14402 1.19999 0.94955 1.21108 1.09610 0.90732 1.25789 0.92637 1.01303 1.02486 1.70931 1.15265 1.34627 1.35164 0.83671 0.73627 0.76771 0.75420 1.22216 1.22902 1.22218 1.21620 0.85771 0.94369 0.96595 1.21989 0.97564 0.99227 0.98177 1.21806 0.89991 0.96739 0.93101 0.90623 0.88304 0.90833 0.91108 0.91551 0.92210 0.87952 0.87639 0.91726 0.89144 0.90472 0.91519 0.90918 0.91725 0.91566 0.94501 0.95717 0.92784 0.94130 0.95965 0.91377 0.90017 0.91165 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.45 101.05 1.06 0.17 16 2 S -0.24 -2.43 20.24 -107.50 -2.18 -4.61 16 3 C -0.04 -0.36 2.44 -26.74 -0.07 -0.42 16 4 H 0.09 0.82 7.96 -51.92 -0.41 0.40 16 5 C -0.15 -0.81 9.10 37.16 0.34 -0.47 16 6 C -0.12 -0.94 3.52 -27.89 -0.10 -1.03 16 7 C 0.51 5.56 7.41 -10.99 -0.08 5.48 16 8 O -0.52 -7.44 14.21 5.55 0.08 -7.36 16 9 N -0.61 -6.09 2.97 -172.79 -0.51 -6.60 16 10 C 0.11 1.17 6.43 -3.71 -0.02 1.14 16 11 C -0.13 -1.38 5.23 -26.61 -0.14 -1.52 16 12 C -0.07 -0.84 1.66 -90.57 -0.15 -0.99 16 13 C -0.10 -1.55 2.56 -88.47 -0.23 -1.77 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -2.02 5.57 -24.89 -0.14 -2.16 16 16 C 0.12 2.58 5.00 -3.06 -0.02 2.56 16 17 N -0.61 -15.16 3.28 -170.07 -0.56 -15.72 16 18 C -0.33 -9.56 10.42 -15.06 -0.16 -9.72 16 19 H 0.07 2.27 8.06 -52.48 -0.42 1.84 16 20 C -0.02 -0.65 5.43 -17.43 -0.09 -0.74 16 21 N -0.92 -29.10 13.70 55.49 0.76 -28.34 16 22 Si 1.07 27.54 24.69 -169.99 -4.20 23.34 16 23 H -0.29 -7.15 6.80 56.52 0.38 -6.76 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.29 -7.26 6.75 56.52 0.38 -6.88 16 26 C 0.14 2.77 5.65 -2.53 -0.01 2.75 16 27 C -0.13 -1.33 5.18 -26.63 -0.14 -1.47 16 28 C 0.11 0.86 6.34 -3.73 -0.02 0.84 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.07 0.41 7.14 -51.92 -0.37 0.04 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 35 H 0.10 0.73 7.69 -51.93 -0.40 0.33 16 36 H 0.11 0.54 7.94 -51.93 -0.41 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.05 7.01 -51.93 -0.36 0.68 16 39 H 0.08 0.80 7.45 -51.93 -0.39 0.41 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 42 H 0.06 0.94 8.11 -51.92 -0.42 0.52 16 43 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 44 H 0.04 0.86 7.97 -51.93 -0.41 0.45 16 45 H 0.03 0.59 3.59 -51.93 -0.19 0.40 16 46 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 47 H 0.04 0.79 8.01 -51.93 -0.42 0.37 16 48 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.84 7.21 -51.93 -0.37 0.47 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 52 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 LS Contribution 399.33 15.07 6.02 6.02 Total: -1.00 -34.72 399.33 -10.06 -44.77 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -9.50 Total: -4.13 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 0.03 Total: -7.36 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.31 Total: -50.66 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 14 Polarization: 27.54 SS G_CDS: -4.20 Total: 23.34 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.18 Total: -4.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.72 -10.06 -44.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754536583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.139 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds