Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81397 * 103.00134 * 2 1 4 4 H 1.09007 * 109.47238 * 305.00662 * 3 2 1 5 5 C 1.53001 * 109.47052 * 64.99872 * 3 2 1 6 6 C 1.52991 * 109.47468 * 185.00061 * 3 2 1 7 7 C 1.50701 * 109.47406 * 65.00187 * 6 3 2 8 8 O 1.21292 * 119.99673 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00651 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.63412 * 179.97438 * 9 7 6 11 11 C 1.53189 * 108.77885 * 233.58773 * 10 9 7 12 12 C 1.53044 * 109.31097 * 305.36388 * 11 10 9 13 13 C 1.53002 * 109.46157 * 181.38632 * 12 11 10 14 14 H 1.09000 * 110.88252 * 302.39927 * 13 12 11 15 15 C 1.55155 * 111.03683 * 66.30417 * 13 12 11 16 16 C 1.54337 * 103.02124 * 153.39881 * 15 13 12 17 17 N 1.47022 * 107.26372 * 338.14006 * 16 15 13 18 18 C 1.36932 * 125.64698 * 178.85099 * 17 16 15 19 19 H 1.08006 * 119.99571 * 169.55355 * 18 17 16 20 20 C 1.38810 * 120.00088 * 349.55176 * 18 17 16 21 21 N 1.31621 * 119.99846 * 152.80113 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 332.80327 * 20 18 17 23 23 H 1.48499 * 109.47129 * 85.29201 * 22 20 18 24 24 H 1.48503 * 109.47091 * 205.29245 * 22 20 18 25 25 H 1.48498 * 109.46868 * 325.29354 * 22 20 18 26 26 C 1.47432 * 108.70275 * 358.58536 * 17 16 15 27 27 C 1.53042 * 109.52764 * 61.37021 * 12 11 10 28 28 C 1.46924 * 120.63019 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47772 * 59.99939 * 1 2 3 30 30 H 1.08999 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47440 * 299.99594 * 1 2 3 32 32 H 1.09008 * 109.46972 * 60.00347 * 5 3 2 33 33 H 1.09001 * 109.47179 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47643 * 299.99940 * 5 3 2 35 35 H 1.08998 * 109.47385 * 305.00246 * 6 3 2 36 36 H 1.09001 * 109.47697 * 185.00086 * 6 3 2 37 37 H 1.09003 * 109.58624 * 113.79543 * 10 9 7 38 38 H 1.09003 * 109.70216 * 353.44890 * 10 9 7 39 39 H 1.09003 * 109.49914 * 185.41534 * 11 10 9 40 40 H 1.09002 * 109.52215 * 65.33064 * 11 10 9 41 41 H 1.09000 * 109.46104 * 301.35717 * 12 11 10 42 42 H 1.09008 * 110.71923 * 271.95609 * 15 13 12 43 43 H 1.09002 * 110.72269 * 35.22504 * 15 13 12 44 44 H 1.08997 * 109.99116 * 218.66767 * 16 15 13 45 45 H 1.09002 * 109.77782 * 97.49100 * 16 15 13 46 46 H 0.97001 * 119.99981 * 5.05460 * 21 20 18 47 47 H 1.08995 * 110.36373 * 143.19582 * 26 17 16 48 48 H 1.08999 * 110.36650 * 265.40827 * 26 17 16 49 49 H 1.09004 * 109.49302 * 58.57683 * 27 12 11 50 50 H 1.08994 * 109.49618 * 178.67334 * 27 12 11 51 51 H 1.09005 * 109.58548 * 246.20613 * 28 9 7 52 52 H 1.09000 * 109.58379 * 6.47950 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7293 2.2542 -0.8418 5 6 1.7427 2.4015 1.3074 6 6 3.7368 1.9412 -0.1257 7 6 4.1919 1.4271 -1.4673 8 8 3.3840 0.9665 -2.2460 9 7 5.4965 1.4780 -1.8014 10 6 5.9554 0.9802 -3.1053 11 6 7.0782 -0.0367 -2.8776 12 6 8.1773 0.6048 -2.0276 13 6 9.3165 -0.3966 -1.8270 14 1 8.9521 -1.3110 -1.3588 15 6 10.0296 -0.7054 -3.1699 16 6 11.4519 -1.1062 -2.7243 17 7 11.6684 -0.5325 -1.3881 18 6 12.8004 -0.6771 -0.6313 19 1 12.9331 -0.0829 0.2607 20 6 13.7772 -1.5874 -1.0107 21 7 15.0316 -1.3888 -0.6651 22 14 13.3116 -3.0942 -2.0118 23 1 13.2893 -2.7425 -3.4544 24 1 14.3086 -4.1701 -1.7799 25 1 11.9667 -3.5677 -1.5970 26 6 10.4673 0.2297 -1.0005 27 6 7.6037 1.0040 -0.6661 28 6 6.4870 2.0325 -0.8686 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2354 1.9149 2.1492 33 1 1.9883 3.4635 1.3076 34 1 0.6635 2.2779 1.3970 35 1 4.2338 1.3804 0.6658 36 1 3.9901 2.9976 -0.0366 37 1 6.3306 1.8114 -3.7024 38 1 5.1277 0.4999 -3.6273 39 1 7.4929 -0.3421 -3.8383 40 1 6.6800 -0.9091 -2.3594 41 1 8.5582 1.4911 -2.5351 42 1 9.5383 -1.5298 -3.6869 43 1 10.0631 0.1822 -3.8018 44 1 12.1875 -0.7072 -3.4226 45 1 11.5317 -2.1923 -2.6787 46 1 15.2631 -0.6472 -0.0843 47 1 10.2738 0.1161 0.0661 48 1 10.5885 1.2830 -1.2533 49 1 7.2001 0.1220 -0.1687 50 1 8.3923 1.4394 -0.0525 51 1 6.9057 2.9497 -1.2829 52 1 6.0086 2.2482 0.0867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754536583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = -41.775371 kcal Electronic energy + Delta-G solvation = -28195.269556 eV Core-core repulsion = 24513.248653 eV Total energy + Delta-G solvation = -3682.020904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30229 -39.92305 -38.08402 -35.57257 -35.28585 -33.83216 -32.23989 -31.26993 -30.08016 -29.67626 -28.65908 -26.54467 -24.90174 -24.29716 -23.10302 -22.30260 -21.80080 -20.92160 -19.91346 -19.46325 -18.14612 -17.64122 -17.17994 -16.99170 -16.44540 -16.26063 -15.84251 -15.59617 -15.26567 -15.13992 -14.94968 -14.73827 -14.58162 -14.29374 -14.17778 -14.03398 -13.90661 -13.65363 -13.33990 -13.24753 -13.09780 -12.95259 -12.91526 -12.85486 -12.53154 -12.36766 -12.26389 -12.15294 -12.05702 -11.79806 -11.72041 -11.50939 -11.28986 -11.09718 -11.00881 -10.74945 -10.63139 -10.56165 -9.56632 -9.15290 -8.63949 -8.47541 -5.40903 0.81614 1.37667 1.49279 1.69221 1.69969 1.73188 2.08150 2.50063 3.02709 3.38721 3.49162 3.61078 3.65672 3.79492 3.84659 4.00980 4.11950 4.19517 4.24317 4.25924 4.28980 4.31014 4.33818 4.44780 4.47400 4.49299 4.54859 4.59693 4.63806 4.72763 4.76934 4.82186 4.86129 4.87753 4.91426 4.94930 4.99342 4.99646 5.05240 5.09287 5.18944 5.23216 5.26280 5.30349 5.37906 5.58036 5.61906 5.65608 6.12288 6.48191 6.84030 7.25994 7.51586 8.16150 8.84507 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.002164 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.250556 B =12936.081431 C =13020.552224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.315 6.315 3 C -0.030 4.030 4 H 0.081 0.919 5 C -0.142 4.142 6 C -0.121 4.121 7 C 0.503 3.497 8 O -0.564 6.564 9 N -0.612 5.612 10 C 0.115 3.885 11 C -0.120 4.120 12 C -0.063 4.063 13 C -0.084 4.084 14 H 0.066 0.934 15 C -0.112 4.112 16 C 0.104 3.896 17 N -0.635 5.635 18 C -0.319 4.319 19 H 0.045 0.955 20 C -0.080 4.080 21 N -0.954 5.954 22 Si 1.113 2.887 23 H -0.273 1.273 24 H -0.306 1.306 25 H -0.279 1.279 26 C 0.138 3.862 27 C -0.130 4.130 28 C 0.109 3.891 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.022 0.978 45 H 0.017 0.983 46 H 0.248 0.752 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.376 10.885 0.003 33.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.089 6.089 3 C -0.159 4.159 4 H 0.099 0.901 5 C -0.201 4.201 6 C -0.161 4.161 7 C 0.292 3.708 8 O -0.442 6.442 9 N -0.346 5.346 10 C -0.007 4.007 11 C -0.158 4.158 12 C -0.082 4.082 13 C -0.103 4.103 14 H 0.085 0.915 15 C -0.149 4.149 16 C -0.021 4.021 17 N -0.362 5.362 18 C -0.448 4.448 19 H 0.063 0.937 20 C -0.274 4.274 21 N -0.598 5.598 22 Si 0.942 3.058 23 H -0.199 1.199 24 H -0.235 1.235 25 H -0.206 1.206 26 C 0.013 3.987 27 C -0.169 4.169 28 C -0.013 4.013 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.156 0.844 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.040 0.960 45 H 0.035 0.965 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.076 0.924 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -30.458 8.470 -1.120 31.634 hybrid contribution -0.549 1.988 1.108 2.341 sum -31.007 10.458 -0.013 32.723 Atomic orbital electron populations 1.23362 0.92044 1.06876 1.05399 1.87249 1.10084 1.13700 1.97879 1.22889 0.98000 0.92689 1.02332 0.90055 1.22080 1.01759 1.01768 0.94512 1.21654 0.94248 1.05372 0.94824 1.21044 0.81845 0.78248 0.89638 1.90725 1.53357 1.46732 1.53411 1.48239 1.06777 1.61657 1.17899 1.21536 0.96986 0.97545 0.84679 1.21883 0.95022 0.97850 1.01058 1.21001 0.93207 0.97570 0.96420 1.22307 0.93998 0.98610 0.95430 0.91529 1.22615 0.92347 1.02618 0.97367 1.21838 0.97769 0.95799 0.86688 1.44966 1.14930 1.60891 1.15436 1.19931 0.96591 1.19545 1.08687 0.93665 1.26986 0.92314 1.03825 1.04281 1.71035 1.16642 1.35008 1.37076 0.83116 0.73714 0.73461 0.75553 1.19914 1.23511 1.20648 1.21809 0.85379 0.94382 0.97087 1.21960 0.98243 0.99562 0.97105 1.21928 0.89007 0.96276 0.94085 0.90582 0.87896 0.89037 0.91032 0.89530 0.91888 0.87208 0.84391 0.90189 0.90800 0.89586 0.92922 0.89859 0.89118 0.89425 0.96005 0.96519 0.94220 0.94729 0.94978 0.92374 0.90113 0.89505 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.45 113.37 1.18 -0.25 16 2 S -0.31 -6.33 20.24 -56.49 -1.14 -7.48 16 3 C -0.03 -0.42 2.44 30.59 0.07 -0.35 16 4 H 0.08 1.33 7.96 -2.39 -0.02 1.31 16 5 C -0.14 -1.16 9.10 71.98 0.66 -0.50 16 6 C -0.12 -1.50 3.52 29.85 0.11 -1.39 16 7 C 0.50 10.07 7.41 87.66 0.65 10.71 16 8 O -0.56 -15.79 14.21 -3.07 -0.04 -15.83 16 9 N -0.61 -10.60 2.97 -818.97 -2.43 -13.03 16 10 C 0.12 2.10 6.43 86.36 0.56 2.65 16 11 C -0.12 -2.25 5.23 30.67 0.16 -2.09 16 12 C -0.06 -1.26 1.66 -10.76 -0.02 -1.28 16 13 C -0.08 -2.39 2.56 -9.40 -0.02 -2.42 16 14 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.11 -3.31 5.57 31.79 0.18 -3.13 16 16 C 0.10 4.42 5.00 86.73 0.43 4.85 16 17 N -0.63 -31.21 3.28 -691.96 -2.27 -33.48 16 18 C -0.32 -18.89 10.42 84.03 0.88 -18.02 16 19 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 20 C -0.08 -4.88 5.43 84.86 0.46 -4.42 16 21 N -0.95 -62.29 13.70 21.65 0.30 -61.99 16 22 Si 1.11 55.93 24.69 68.60 1.69 57.63 16 23 H -0.27 -12.62 6.80 99.48 0.68 -11.94 16 24 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 25 H -0.28 -13.19 6.75 99.48 0.67 -12.52 16 26 C 0.14 5.17 5.65 86.85 0.49 5.67 16 27 C -0.13 -2.28 5.18 30.66 0.16 -2.12 16 28 C 0.11 1.36 6.34 86.35 0.55 1.91 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 0.86 7.14 -2.39 -0.02 0.84 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.48 6.92 -2.39 -0.02 0.47 16 35 H 0.11 1.25 7.69 -2.39 -0.02 1.23 16 36 H 0.14 0.81 7.94 -2.39 -0.02 0.79 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.63 7.01 -2.39 -0.02 1.62 16 39 H 0.09 1.48 7.45 -2.39 -0.02 1.46 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 42 H 0.09 2.27 8.11 -2.38 -0.02 2.25 16 43 H 0.09 2.25 8.02 -2.39 -0.02 2.23 16 44 H 0.02 0.99 7.97 -2.39 -0.02 0.97 16 45 H 0.02 0.77 3.59 -2.39 -0.01 0.76 16 46 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 47 H 0.03 1.32 8.01 -2.39 -0.02 1.30 16 48 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 49 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.08 1.45 7.21 -2.39 -0.02 1.43 16 51 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.11 0.84 5.93 -2.39 -0.01 0.83 16 Total: -1.00 -79.08 399.33 3.35 -75.73 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.77 Total: 8.63 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 6.49 Total: -10.17 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.41 Total: -108.50 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.04 Total: -15.83 kcal Atomic # 14 Polarization: 55.93 SS G_CDS: 1.69 Total: 57.63 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -1.14 Total: -7.48 kcal Total: -79.08 3.35 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754536583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.950 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds