Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99893 * 2 1 4 4 O 1.21274 * 119.99897 * 179.73022 * 3 2 1 5 5 C 1.50695 * 119.99635 * 0.02562 * 3 2 1 6 6 S 1.81006 * 109.46975 * 180.02562 * 5 3 2 7 7 C 1.76200 * 100.00155 * 179.97438 * 6 5 3 8 8 H 1.08005 * 119.99670 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00050 * 180.02562 * 7 6 5 10 10 N 1.31626 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00049 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47184 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47541 * 119.99901 * 11 9 7 14 14 H 1.48497 * 109.47123 * 239.99909 * 11 9 7 15 15 C 1.46499 * 120.00136 * 180.02562 * 2 1 3 16 16 H 1.09004 * 109.46973 * 179.97438 * 15 2 1 17 17 C 1.52996 * 109.47349 * 299.99631 * 15 2 1 18 18 N 1.46904 * 109.47293 * 305.00082 * 17 15 2 19 19 C 1.46891 * 111.00271 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47081 * 179.97438 * 19 18 17 21 21 C 1.54266 * 110.03473 * 292.91099 * 20 19 18 22 22 C 1.54964 * 104.16109 * 217.13718 * 21 20 19 23 23 C 1.54894 * 102.77605 * 37.88955 * 22 21 20 24 24 C 1.53879 * 110.03216 * 175.69477 * 20 19 18 25 25 C 1.52998 * 109.47194 * 59.99930 * 15 2 1 26 26 C 1.53001 * 117.49881 * 128.74747 * 25 15 2 27 27 C 1.52997 * 117.50083 * 60.08626 * 25 15 2 28 28 H 1.08996 * 109.47008 * 90.00348 * 1 2 3 29 29 H 1.08997 * 109.46865 * 210.00034 * 1 2 3 30 30 H 1.08998 * 109.47058 * 329.99547 * 1 2 3 31 31 H 1.09005 * 109.47403 * 300.00056 * 5 3 2 32 32 H 1.09002 * 109.47422 * 60.00295 * 5 3 2 33 33 H 0.97005 * 120.00072 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.46900 * 64.99945 * 17 15 2 35 35 H 1.09004 * 109.47581 * 185.00180 * 17 15 2 36 36 H 1.00903 * 110.99522 * 56.04383 * 18 17 15 37 37 H 1.08998 * 109.47687 * 300.00600 * 19 18 17 38 38 H 1.09006 * 109.47154 * 60.00414 * 19 18 17 39 39 H 1.08996 * 110.01799 * 54.30560 * 20 19 18 40 40 H 1.08997 * 110.48701 * 335.78248 * 21 20 19 41 41 H 1.08995 * 110.48598 * 98.42548 * 21 20 19 42 42 H 1.08997 * 110.72004 * 279.57474 * 22 21 20 43 43 H 1.09005 * 110.92544 * 156.29657 * 22 21 20 44 44 H 1.09007 * 110.48135 * 203.40366 * 23 22 21 45 45 H 1.08994 * 110.59823 * 80.82071 * 23 22 21 46 46 H 1.09001 * 110.03091 * 238.57363 * 24 20 19 47 47 H 1.09003 * 110.03104 * 359.94968 * 24 20 19 48 48 H 1.08994 * 115.55126 * 274.41604 * 25 15 2 49 49 H 1.08996 * 117.50295 * 359.97438 * 26 25 15 50 50 H 1.09000 * 117.49891 * 145.01892 * 26 25 15 51 51 H 1.08996 * 117.50211 * 214.98007 * 27 25 15 52 52 H 1.09002 * 117.49720 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 0.0049 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 -0.0003 7 6 1.4413 5.2083 -0.0002 8 1 0.3760 5.0305 0.0007 9 6 1.9280 6.5081 -0.0014 10 7 3.2263 6.7247 -0.0020 11 14 0.7405 7.9500 -0.0005 12 1 -0.6550 7.4421 0.0007 13 1 0.9676 8.7777 1.2113 14 1 0.9648 8.7766 -1.2136 15 6 2.1975 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8280 -2.0715 1.2483 18 7 2.0715 -1.2552 2.4451 19 6 1.7266 -1.9951 3.6663 20 6 1.9935 -1.1146 4.8887 21 6 3.5084 -0.8652 5.0397 22 6 3.7445 -0.8818 6.5712 23 6 2.7890 -2.0017 7.0529 24 6 1.5361 -1.8365 6.1683 25 6 1.8279 -2.0705 -1.2501 26 6 2.9741 -2.6049 -2.1112 27 6 2.1227 -1.4348 -2.6102 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.7582 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 3.5665 7.6332 -0.0024 34 1 0.7742 -2.3470 1.2046 35 1 2.4378 -2.9739 1.2939 36 1 1.5668 -0.3828 2.3965 37 1 0.6721 -2.2698 3.6391 38 1 2.3354 -2.8971 3.7288 39 1 1.4672 -0.1655 4.7870 40 1 4.0760 -1.6613 4.5578 41 1 3.7789 0.1043 4.6217 42 1 3.4714 0.0760 7.0139 43 1 4.7800 -1.1315 6.8027 44 1 2.5355 -1.8609 8.1037 45 1 3.2388 -2.9824 6.8981 46 1 0.7884 -1.2373 6.6880 47 1 1.1231 -2.8138 5.9183 48 1 0.9324 -2.6861 -1.1659 49 1 3.9915 -2.3851 -1.7878 50 1 2.8325 -3.5720 -2.5937 51 1 1.4214 -1.6325 -3.4208 52 1 2.5796 -0.4452 -2.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755555727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -25.520956 kcal Electronic energy + Delta-G solvation = -28073.825907 eV Core-core repulsion = 24392.509848 eV Total energy + Delta-G solvation = -3681.316059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.98432 -38.60962 -37.46637 -35.76034 -34.41291 -32.41073 -31.11058 -29.27633 -28.72743 -27.76349 -26.52173 -25.45473 -23.99201 -22.52815 -22.18318 -20.75153 -20.68339 -19.74150 -18.96503 -17.66345 -16.89603 -16.32181 -16.02067 -15.81146 -15.32358 -15.15487 -14.84994 -14.78964 -14.48343 -14.00793 -13.90869 -13.68741 -13.40485 -13.11378 -13.00304 -12.65713 -12.34743 -12.18292 -12.08232 -11.99451 -11.76262 -11.57639 -11.29870 -11.25485 -11.07988 -11.06165 -11.03028 -10.99083 -10.82495 -10.74090 -10.66716 -10.49523 -10.44539 -10.24612 -9.76842 -9.21882 -9.05636 -8.58798 -8.32552 -8.18411 -6.46780 -6.19884 -3.89692 2.91360 3.13970 3.22261 3.26181 3.31522 3.57222 3.88400 3.94716 4.22109 4.48562 4.54165 4.59416 4.72057 4.81617 4.93317 4.97011 5.04184 5.10159 5.10658 5.15296 5.16584 5.25859 5.33863 5.37963 5.44262 5.45867 5.53527 5.55580 5.57814 5.59025 5.62852 5.68130 5.70862 5.72923 5.79168 5.81543 5.90970 5.92955 5.94507 6.03265 6.10485 6.16152 6.18680 6.23479 6.32704 6.40111 6.73096 6.95994 7.31610 7.60663 7.62639 8.37022 8.65352 9.25583 10.87494 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007723 B = 0.003368 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3624.628071 B = 8312.506918 C =10978.817253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.536 3.464 4 O -0.509 6.509 5 C -0.150 4.150 6 S -0.060 6.060 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.917 3.083 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.173 3.827 16 H 0.110 0.890 17 C 0.057 3.943 18 N -0.682 5.682 19 C 0.070 3.930 20 C -0.092 4.092 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.167 4.167 26 C -0.171 4.171 27 C -0.166 4.166 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.267 0.733 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.345 0.655 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -22.374 6.039 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.351 5.351 3 C 0.323 3.677 4 O -0.383 6.383 5 C -0.300 4.300 6 S 0.167 5.833 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.069 3.931 16 H 0.128 0.872 17 C -0.073 4.073 18 N -0.314 5.314 19 C -0.060 4.060 20 C -0.111 4.111 21 C -0.143 4.143 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.186 4.186 26 C -0.209 4.209 27 C -0.204 4.204 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.120 0.880 49 H 0.115 0.885 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.672 -22.386 6.083 23.486 hybrid contribution -3.420 0.912 -0.125 3.541 sum -7.092 -21.474 5.959 23.386 Atomic orbital electron populations 1.21701 0.80370 1.02531 1.01821 1.47851 1.06340 1.05344 1.75570 1.20267 0.87946 0.84375 0.75069 1.90694 1.13651 1.86539 1.47392 1.23555 1.04518 0.97468 1.04478 1.85412 1.07963 0.93243 1.96660 1.22902 0.94335 0.92292 1.58726 0.91006 1.24978 0.95628 0.98349 0.94609 1.70029 1.11699 1.21503 1.46995 0.86141 0.80382 0.81221 0.77891 1.19654 1.20576 1.20601 1.20589 0.98984 0.82353 0.91157 0.87206 1.22211 0.98710 0.96514 0.89865 1.60315 1.63265 1.07070 1.00748 1.22078 0.97656 0.96824 0.89405 1.21779 0.97440 0.98511 0.93349 1.22282 0.94658 1.02583 0.94813 1.22565 0.99023 0.98558 0.96569 1.22338 0.95928 0.99002 0.98832 1.22169 0.97783 1.00182 0.95587 1.22571 1.00360 1.03369 0.92334 1.22989 0.96221 0.98233 1.03438 1.22859 1.03114 0.98280 0.96100 0.92717 0.91917 0.90845 0.89519 0.89503 0.92276 0.95367 0.90162 0.83584 0.95888 0.91166 0.91155 0.91427 0.91157 0.91670 0.91822 0.92093 0.91897 0.91952 0.92030 0.88025 0.88468 0.88901 0.89009 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 9.59 59.85 0.57 1.40 16 2 N -0.61 -8.29 1.71 -173.94 -0.30 -8.58 16 3 C 0.54 9.92 7.69 -10.98 -0.08 9.84 16 4 O -0.51 -11.47 15.19 5.56 0.08 -11.39 16 5 C -0.15 -3.01 4.71 36.00 0.17 -2.84 16 6 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 7 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 11 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.17 2.10 2.53 -67.93 -0.17 1.93 16 16 H 0.11 1.69 6.66 -51.93 -0.35 1.35 16 17 C 0.06 0.59 4.96 -3.82 -0.02 0.57 16 18 N -0.68 -7.98 6.30 -113.78 -0.72 -8.70 16 19 C 0.07 0.68 4.74 -3.83 -0.02 0.66 16 20 C -0.09 -0.93 3.09 -89.50 -0.28 -1.21 16 21 C -0.11 -1.18 6.18 -25.03 -0.15 -1.33 16 22 C -0.13 -1.24 6.91 -24.70 -0.17 -1.41 16 23 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 24 C -0.12 -1.01 6.46 -25.61 -0.17 -1.18 16 25 C -0.17 -1.69 4.83 -90.62 -0.44 -2.12 16 26 C -0.17 -1.68 10.18 -26.69 -0.27 -1.95 16 27 C -0.17 -1.85 10.13 -26.69 -0.27 -2.12 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.52 6.53 -51.93 -0.34 0.19 16 30 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 31 H 0.09 1.65 8.11 -51.91 -0.42 1.22 16 32 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.03 0.26 6.88 -51.93 -0.36 -0.10 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.34 4.46 7.86 -39.29 -0.31 4.15 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.67 8.02 -51.93 -0.42 0.26 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.77 7.77 -51.93 -0.40 0.37 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.47 7.67 -51.93 -0.40 0.08 16 48 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 49 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 423.15 15.07 6.38 6.38 Total: -1.00 -32.56 423.15 -11.91 -44.47 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -9.59 Total: 4.55 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.27 Total: -13.87 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.28 Total: -42.72 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.56 -11.91 -44.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755555727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.951 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds