Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46503 * 109.46849 * 184.99887 * 4 2 1 6 6 C 1.46499 * 120.00051 * 270.00178 * 5 4 2 7 7 C 1.34780 * 120.00049 * 89.99578 * 5 4 2 8 8 O 1.21279 * 119.99869 * 0.02562 * 7 5 4 9 9 C 1.50692 * 120.00032 * 179.97438 * 7 5 4 10 10 S 1.81002 * 109.47089 * 180.02562 * 9 7 5 11 11 C 1.76208 * 100.00021 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99582 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99959 * 180.02562 * 11 10 9 14 14 N 1.31626 * 119.99771 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47048 * 89.99998 * 15 13 11 17 17 H 1.48498 * 109.47018 * 209.99951 * 15 13 11 18 18 H 1.48505 * 109.47013 * 329.99801 * 15 13 11 19 19 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 20 20 C 1.46894 * 111.00220 * 274.99988 * 19 2 1 21 21 C 1.53001 * 109.47508 * 179.97438 * 20 19 2 22 22 C 1.53950 * 113.58185 * 274.24554 * 21 20 19 23 23 C 1.53064 * 86.72739 * 220.68645 * 22 21 20 24 24 C 1.52905 * 121.17555 * 150.58309 * 23 22 21 25 25 C 1.53953 * 86.78360 * 100.75532 * 24 23 22 26 26 C 1.52911 * 121.06835 * 259.12395 * 23 22 21 27 27 C 1.52906 * 88.06991 * 24.83235 * 23 22 21 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 32 32 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 33 33 H 1.09000 * 109.47382 * 89.99711 * 6 5 4 34 34 H 1.09000 * 109.47058 * 209.99919 * 6 5 4 35 35 H 1.09004 * 109.46671 * 329.99854 * 6 5 4 36 36 H 1.09002 * 109.47841 * 300.00548 * 9 7 5 37 37 H 1.09001 * 109.46876 * 60.00715 * 9 7 5 38 38 H 0.97003 * 119.99507 * 180.02562 * 14 13 11 39 39 H 1.00904 * 110.99838 * 151.04516 * 19 2 1 40 40 H 1.08998 * 109.47346 * 299.99916 * 20 19 2 41 41 H 1.09007 * 109.47035 * 60.00148 * 20 19 2 42 42 H 1.09004 * 112.81830 * 45.33177 * 21 20 19 43 43 H 1.09003 * 113.66309 * 335.13733 * 22 21 20 44 44 H 1.09004 * 113.66009 * 106.18556 * 22 21 20 45 45 H 1.08999 * 113.66806 * 215.22216 * 24 23 22 46 46 H 1.09001 * 113.66265 * 346.28294 * 24 23 22 47 47 H 1.09004 * 113.57684 * 270.13324 * 25 24 23 48 48 H 1.08995 * 113.65476 * 139.34612 * 25 24 23 49 49 H 1.08999 * 113.66566 * 13.62692 * 26 23 22 50 50 H 1.09006 * 113.66147 * 144.68968 * 26 23 22 51 51 H 1.08999 * 113.67089 * 220.69751 * 27 23 22 52 52 H 1.09005 * 113.74695 * 89.65011 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2341 -1.7613 7 6 4.0757 -1.8986 -0.6116 8 8 3.3851 -2.7767 -0.1395 9 6 5.5776 -2.0070 -0.5518 10 16 6.0386 -3.5476 0.2790 11 6 7.7947 -3.4179 0.2115 12 1 8.2551 -2.5578 -0.2517 13 6 8.5860 -4.4216 0.7529 14 7 8.0246 -5.4705 1.3161 15 14 10.4475 -4.2843 0.6807 16 1 10.9396 -3.5841 1.8942 17 1 11.0420 -5.6437 0.6183 18 1 10.8408 -3.5161 -0.5278 19 7 2.0197 -0.6925 1.1994 20 6 2.0825 0.2225 2.3468 21 6 2.5951 -0.5332 3.5745 22 6 1.4873 -1.2640 4.3547 23 6 2.1958 -0.7948 5.6278 24 6 1.4170 -0.5379 6.9182 25 6 1.9145 -1.9161 7.3906 26 6 3.0984 -1.7394 6.4224 27 6 2.7812 0.3601 4.8144 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -1.7197 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 4.5399 0.9849 -0.9983 34 1 5.2733 -0.1924 -2.1138 35 1 3.8101 0.6989 -2.5964 36 1 5.9827 -2.0050 -1.5637 37 1 5.9811 -1.1599 0.0029 38 1 8.5777 -6.1717 1.6947 39 1 2.9173 -1.1205 1.0286 40 1 2.7589 1.0461 2.1182 41 1 1.0870 0.6162 2.5525 42 1 3.4596 -1.1597 3.3547 43 1 0.4971 -0.8290 4.2194 44 1 1.4983 -2.3457 4.2202 45 1 1.8066 0.2930 7.5064 46 1 0.3375 -0.4879 6.7751 47 1 1.2490 -2.7360 7.1204 48 1 2.2090 -1.9387 8.4398 49 1 3.3622 -2.6492 5.8832 50 1 3.9607 -1.2461 6.8712 51 1 3.8244 0.5743 5.0466 52 1 2.1564 1.2533 4.8078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755577751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = 3.384870 kcal Electronic energy + Delta-G solvation = -28254.222453 eV Core-core repulsion = 24574.159844 eV Total energy + Delta-G solvation = -3680.062609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.44903 -39.83127 -36.98050 -35.47212 -34.36445 -32.43714 -31.08600 -29.39769 -27.31831 -26.14023 -25.74408 -25.70879 -25.61658 -25.08153 -22.62638 -20.65830 -20.11262 -19.14136 -17.88200 -17.68107 -16.66797 -16.40058 -15.95058 -15.59043 -15.38397 -15.08864 -14.81281 -14.77649 -14.34940 -14.05161 -13.51590 -13.25564 -13.10384 -12.94159 -12.74019 -12.67028 -12.57101 -12.45444 -12.13998 -12.08690 -11.97011 -11.82531 -11.67005 -11.48904 -11.25452 -11.07252 -11.05223 -11.01141 -10.77459 -10.76153 -10.54951 -10.09504 -9.98359 -9.81545 -9.62049 -9.37125 -9.07381 -8.55993 -8.23499 -8.19046 -6.50686 -6.22415 -3.92935 2.91451 2.99105 3.21342 3.25222 3.29376 3.58554 4.15599 4.19329 4.43383 4.48853 4.67173 4.79556 4.82648 4.85610 4.87678 4.94546 5.04733 5.12789 5.19659 5.26608 5.36244 5.40685 5.42081 5.44844 5.56737 5.60699 5.64178 5.66453 5.67894 5.68842 5.70658 5.75071 5.79908 5.85700 5.87038 5.87904 5.90228 5.97676 6.09225 6.10180 6.12536 6.19577 6.23592 6.38455 6.55632 6.59914 6.65340 7.23619 7.46820 7.58660 7.64286 8.34135 8.51338 9.23002 10.84857 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007546 B = 0.003729 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3709.628600 B = 7506.611846 C =10450.214492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 H 0.038 0.962 4 C 0.112 3.888 5 N -0.630 5.630 6 C 0.080 3.920 7 C 0.525 3.475 8 O -0.496 6.496 9 C -0.153 4.153 10 S -0.056 6.056 11 C -0.537 4.537 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.866 5.866 15 Si 0.917 3.083 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.678 5.678 20 C 0.073 3.927 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.105 4.105 24 C -0.128 4.128 25 C -0.139 4.139 26 C -0.119 4.119 27 C -0.123 4.123 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.353 0.647 40 H 0.021 0.979 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.066 0.934 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 15.533 2.162 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 H 0.056 0.944 4 C -0.011 4.011 5 N -0.367 5.367 6 C -0.063 4.063 7 C 0.313 3.687 8 O -0.369 6.369 9 C -0.304 4.304 10 S 0.171 5.829 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.502 5.502 15 Si 0.743 3.257 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.316 5.316 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.134 4.134 23 C -0.105 4.105 24 C -0.166 4.166 25 C -0.177 4.177 26 C -0.157 4.157 27 C -0.161 4.161 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.178 0.822 40 H 0.039 0.961 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.084 0.916 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.339 13.775 3.096 20.847 hybrid contribution 2.893 1.840 -0.894 3.543 sum -12.446 15.615 2.202 20.089 Atomic orbital electron populations 1.21728 0.94298 1.02597 1.00845 1.21881 0.95947 0.95634 0.90793 0.94440 1.21698 0.79849 1.02752 0.96794 1.47997 1.06352 1.22032 1.60364 1.21773 0.95943 0.90480 0.98127 1.20416 0.90361 0.80796 0.77097 1.90763 1.64208 1.37831 1.44091 1.23592 0.93640 1.07595 1.05538 1.85411 1.05550 1.18164 1.73789 1.22860 0.91168 1.09729 1.44730 0.91033 1.24969 0.99472 0.94460 0.94533 1.70015 1.35888 1.08546 1.35707 0.86198 0.83212 0.77669 0.78615 1.20272 1.20729 1.19713 1.60542 1.35837 1.31873 1.03381 1.21956 0.99479 0.93376 0.90833 1.22479 0.99452 0.97747 0.92570 1.22615 0.97216 1.00799 0.92738 1.22461 0.97871 0.97194 0.92993 1.22743 0.99576 0.97365 0.96870 1.22802 0.98395 0.97578 0.98890 1.22661 0.96463 0.99454 0.97088 1.22815 1.00793 0.96647 0.95832 0.92784 0.92897 0.91639 0.88934 0.90374 0.93100 0.90559 0.91334 0.89281 0.89518 0.92181 0.82231 0.96113 0.91525 0.88859 0.90276 0.91127 0.90417 0.91763 0.90295 0.91844 0.90861 0.90073 0.91571 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.41 37.16 0.35 -1.02 16 2 C 0.07 0.81 2.95 -67.71 -0.20 0.61 16 3 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 4 C 0.11 1.36 5.24 -4.04 -0.02 1.33 16 5 N -0.63 -8.64 2.66 -181.57 -0.48 -9.13 16 6 C 0.08 0.82 10.29 59.85 0.62 1.44 16 7 C 0.53 9.62 6.06 -10.99 -0.07 9.56 16 8 O -0.50 -10.83 14.03 5.56 0.08 -10.75 16 9 C -0.15 -3.05 4.71 36.00 0.17 -2.88 16 10 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 11 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.08 2.12 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 N -0.68 -9.85 6.19 -106.73 -0.66 -10.51 16 20 C 0.07 0.93 5.30 -3.83 -0.02 0.91 16 21 C -0.10 -1.37 3.89 -89.64 -0.35 -1.72 16 22 C -0.10 -1.20 7.40 -26.20 -0.19 -1.40 16 23 C -0.11 -1.19 1.11 -154.64 -0.17 -1.37 16 24 C -0.13 -1.26 7.84 -26.28 -0.21 -1.47 16 25 C -0.14 -1.42 8.08 -25.74 -0.21 -1.62 16 26 C -0.12 -1.40 7.84 -26.28 -0.21 -1.61 16 27 C -0.12 -1.39 7.40 -26.29 -0.19 -1.59 16 28 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 32 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 35 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 36 H 0.09 1.66 7.40 -51.91 -0.38 1.28 16 37 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.35 6.04 4.47 -39.29 -0.18 5.86 16 40 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 41 H 0.07 0.78 7.17 -51.93 -0.37 0.40 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 420.04 15.07 6.33 6.33 Total: -1.00 -32.25 420.04 -11.30 -43.54 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -9.55 Total: 6.78 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.51 Total: -13.62 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.41 Total: -44.83 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.25 -11.30 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755577751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.927 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds