Wall clock time and date at job start Sat Apr 11 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.32453 * 2 1 4 4 C 1.54906 * 110.36520 * 237.64695 * 2 1 3 5 5 C 1.55155 * 101.58181 * 204.14961 * 4 2 1 6 6 H 1.08996 * 110.72658 * 277.13937 * 5 4 2 7 7 N 1.46905 * 110.72233 * 154.04253 * 5 4 2 8 8 C 1.46892 * 111.00345 * 155.00067 * 7 5 4 9 9 C 1.52997 * 109.47472 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47494 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47464 * 180.02562 * 10 9 8 12 12 C 1.53777 * 113.61257 * 274.13681 * 11 10 9 13 13 C 1.53958 * 87.01922 * 220.04719 * 12 11 10 14 14 C 1.53776 * 87.11134 * 25.36346 * 13 12 11 15 15 C 1.54337 * 103.02070 * 35.31078 * 5 4 2 16 16 N 1.47021 * 107.26261 * 338.14065 * 15 5 4 17 17 C 1.34777 * 125.65024 * 178.85492 * 16 15 5 18 18 O 1.21283 * 120.00463 * 179.69059 * 17 16 15 19 19 C 1.50700 * 119.99675 * 359.41182 * 17 16 15 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09004 * 109.46987 * 299.21640 * 1 2 3 30 30 H 1.09002 * 109.47056 * 59.21431 * 1 2 3 31 31 H 1.09003 * 109.46971 * 179.21698 * 1 2 3 32 32 H 1.08998 * 111.00700 * 322.22917 * 4 2 1 33 33 H 1.08999 * 111.00655 * 86.03800 * 4 2 1 34 34 H 1.00903 * 111.00066 * 278.96091 * 7 5 4 35 35 H 1.09003 * 109.47182 * 300.00698 * 8 7 5 36 36 H 1.09004 * 109.46945 * 60.00005 * 8 7 5 37 37 H 1.09003 * 109.47570 * 300.00563 * 9 8 7 38 38 H 1.09004 * 109.46948 * 60.00109 * 9 8 7 39 39 H 1.09010 * 109.46894 * 300.00338 * 10 9 8 40 40 H 1.08995 * 109.47245 * 59.99846 * 10 9 8 41 41 H 1.08995 * 112.84960 * 45.33139 * 11 10 9 42 42 H 1.08997 * 113.61779 * 334.56672 * 12 11 10 43 43 H 1.09004 * 113.61597 * 105.47006 * 12 11 10 44 44 H 1.08997 * 113.53351 * 270.80892 * 13 12 11 45 45 H 1.08994 * 113.74134 * 139.94865 * 13 12 11 46 46 H 1.08998 * 113.61282 * 220.09198 * 14 13 12 47 47 H 1.09002 * 113.69180 * 89.20022 * 14 13 12 48 48 H 1.08996 * 109.99222 * 218.66804 * 15 5 4 49 49 H 1.09001 * 109.78136 * 97.49276 * 15 5 4 50 50 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 51 51 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 52 52 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2268 5 6 3.4778 -1.2004 -0.7330 6 1 4.1945 -0.3911 -0.8718 7 7 3.9280 -2.4153 -1.4255 8 6 5.3945 -2.4987 -1.4425 9 6 5.8244 -3.7743 -2.1698 10 6 7.3518 -3.8615 -2.1870 11 6 7.7817 -5.1367 -2.9149 12 6 7.8307 -6.3772 -2.0074 13 6 9.1181 -6.7728 -2.7534 14 6 9.3059 -5.2781 -3.0619 15 6 3.2525 -1.4717 0.7696 16 7 2.0431 -0.7373 1.1690 17 6 1.4973 -0.7339 2.4013 18 8 0.4967 -0.0842 2.6196 19 6 2.1266 -1.5424 3.5064 20 16 1.1645 -1.3391 5.0259 21 6 2.0961 -2.3617 6.1172 22 1 2.9740 -2.8772 5.7566 23 6 1.7025 -2.5039 7.4406 24 7 0.6335 -1.8744 7.8805 25 14 2.6906 -3.5875 8.5977 26 1 3.7440 -2.7752 9.2578 27 1 1.7893 -4.1616 9.6288 28 1 3.3241 -4.6869 7.8262 29 1 -0.3633 0.5016 0.8970 30 1 -0.3633 0.5260 -0.8829 31 1 -0.3633 -1.0276 -0.0140 32 1 1.4511 -1.6494 -1.4392 33 1 2.1392 -0.1287 -2.1001 34 1 3.5237 -3.2402 -1.0084 35 1 5.8019 -1.6301 -1.9599 36 1 5.7690 -2.5207 -0.4191 37 1 5.4170 -4.6427 -1.6521 38 1 5.4498 -3.7527 -3.1933 39 1 7.7595 -2.9931 -2.7046 40 1 7.7260 -3.8832 -1.1635 41 1 7.2365 -5.2975 -3.8449 42 1 7.9905 -6.1424 -0.9551 43 1 7.0027 -7.0680 -2.1669 44 1 8.9381 -7.3823 -3.6389 45 1 9.8914 -7.1855 -2.1056 46 1 9.6671 -5.0828 -4.0716 47 1 9.8698 -4.7409 -2.2993 48 1 4.1081 -1.1176 1.3445 49 1 3.1090 -2.5396 0.9342 50 1 2.1410 -2.5951 3.2236 51 1 3.1469 -1.1972 3.6735 52 1 0.3581 -1.9741 8.8053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755671600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:03 Heat of formation + Delta-G solvation = -51.319594 kcal Electronic energy + Delta-G solvation = -26814.465958 eV Core-core repulsion = 23132.031186 eV Total energy + Delta-G solvation = -3682.434772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32713 -39.84577 -38.97221 -36.72332 -34.61553 -33.80303 -33.38091 -30.60807 -30.12569 -27.69793 -27.34917 -26.65974 -26.41698 -23.88769 -23.07240 -22.28075 -21.54326 -20.43933 -20.20199 -19.46750 -18.12547 -17.53842 -16.91033 -16.75431 -16.53359 -16.42730 -15.95267 -15.84947 -15.73702 -15.31343 -15.02110 -14.65612 -14.38703 -14.24521 -13.82548 -13.80069 -13.49397 -13.44074 -13.28420 -13.19004 -13.15869 -13.08068 -12.94330 -12.89389 -12.61932 -12.36464 -12.25282 -12.07759 -11.96850 -11.75729 -11.70633 -11.57223 -11.35285 -11.16968 -10.94833 -10.79844 -10.66733 -10.32012 -9.75914 -9.37655 -8.70746 -8.37347 -6.16128 1.21332 1.40355 1.42501 1.53818 1.55540 2.05025 2.24607 2.96547 3.04087 3.23630 3.50222 3.53751 3.74204 3.82112 3.87771 3.93572 4.01540 4.03247 4.10557 4.18466 4.24559 4.29131 4.31602 4.37137 4.43439 4.48577 4.61535 4.66733 4.73513 4.76345 4.77952 4.87232 4.90093 4.92190 4.96984 4.99605 5.05005 5.08777 5.12753 5.15856 5.23404 5.26921 5.34193 5.38152 5.46323 5.52028 5.57735 5.69834 6.05368 6.16581 6.33964 6.43140 7.03495 7.13414 8.71892 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.002361 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.247262 B =11858.715835 C =15089.779492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.101 4.101 5 C 0.090 3.910 6 H 0.106 0.894 7 N -0.674 5.674 8 C 0.057 3.943 9 C -0.109 4.109 10 C -0.104 4.104 11 C -0.108 4.108 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.139 4.139 15 C 0.069 3.931 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.554 6.554 19 C -0.121 4.121 20 S -0.145 6.145 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.258 1.258 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.346 0.654 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.637 -5.164 -27.202 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.098 0.902 4 C -0.140 4.140 5 C -0.021 4.021 6 H 0.124 0.876 7 N -0.305 5.305 8 C -0.072 4.072 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.127 4.127 12 C -0.180 4.180 13 C -0.184 4.184 14 C -0.177 4.177 15 C -0.055 4.055 16 N -0.348 5.348 17 C 0.334 3.666 18 O -0.432 6.432 19 C -0.272 4.272 20 S 0.082 5.918 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.182 1.182 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.165 0.835 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.992 -3.901 -27.325 31.411 hybrid contribution 1.428 -1.479 1.920 2.813 sum 16.420 -5.379 -25.405 30.724 Atomic orbital electron populations 1.22083 0.94714 1.01938 1.03083 1.22159 0.94921 0.96125 0.84332 0.90178 1.22811 0.94819 1.00472 0.95895 1.22569 0.97645 0.94292 0.87643 0.87611 1.60637 1.08689 1.04271 1.56867 1.22091 0.86858 0.99349 0.98931 1.21464 0.95518 0.96571 1.01130 1.21485 0.95092 0.97445 1.00229 1.22540 0.96306 0.94697 0.99107 1.23030 0.98093 0.97925 0.98930 1.22872 0.98035 0.96805 1.00677 1.22954 0.96254 0.96490 1.01979 1.23074 0.86863 0.96816 0.98783 1.48451 1.28667 1.49253 1.08386 1.19697 0.83412 0.81099 0.82422 1.90643 1.26341 1.44356 1.81893 1.23317 1.03713 1.02957 0.97223 1.85538 1.39444 1.64752 1.02070 1.23169 1.15135 1.33401 0.97793 0.90168 1.26142 0.96425 0.97405 0.99164 1.70182 1.25065 1.42243 1.17146 0.84945 0.77759 0.78039 0.77188 1.19231 1.20140 1.18223 0.92936 0.89459 0.93713 0.90306 0.87345 0.83485 0.90383 0.95184 0.92441 0.91317 0.91417 0.92279 0.89211 0.90530 0.91818 0.89957 0.91609 0.91273 0.90179 0.90975 0.91183 0.88196 0.88136 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 8.71 71.98 0.63 -3.58 16 2 C 0.13 2.90 3.76 45.47 0.17 3.07 16 3 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.10 -1.55 6.19 31.98 0.20 -1.35 16 5 C 0.09 1.28 3.26 46.11 0.15 1.43 16 6 H 0.11 1.31 7.82 -2.39 -0.02 1.29 16 7 N -0.67 -8.57 6.39 -485.44 -3.10 -11.67 16 8 C 0.06 0.63 5.55 86.30 0.48 1.11 16 9 C -0.11 -1.13 5.47 30.59 0.17 -0.97 16 10 C -0.10 -1.03 5.04 30.59 0.15 -0.88 16 11 C -0.11 -1.10 3.64 -10.27 -0.04 -1.14 16 12 C -0.14 -1.60 7.65 31.18 0.24 -1.36 16 13 C -0.15 -1.51 8.09 31.18 0.25 -1.26 16 14 C -0.14 -1.38 7.65 31.12 0.24 -1.14 16 15 C 0.07 1.39 6.22 86.73 0.54 1.93 16 16 N -0.61 -17.29 3.24 -788.13 -2.55 -19.84 16 17 C 0.55 21.47 7.65 87.66 0.67 22.14 16 18 O -0.55 -26.28 13.52 -3.04 -0.04 -26.32 16 19 C -0.12 -5.07 5.35 71.24 0.38 -4.69 16 20 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 21 C -0.55 -31.69 9.50 67.95 0.65 -31.05 16 22 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 23 C 0.01 0.78 5.49 84.86 0.47 1.24 16 24 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 25 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 29 H 0.05 1.81 5.89 -2.38 -0.01 1.80 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.35 4.49 8.07 -89.69 -0.72 3.77 16 35 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 36 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.06 0.64 7.88 -2.39 -0.02 0.62 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.92 7.92 -2.39 -0.02 0.90 16 43 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.38 7.51 -2.39 -0.02 1.37 16 50 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 51 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 52 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -73.75 422.73 0.94 -72.81 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.15 Total: 21.06 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.34 Total: -16.48 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -5.37 Total: -87.53 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.04 Total: -26.32 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -73.75 0.94 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.492 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds