Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 C 1.55157 * 102.94331 * 97.22220 * 4 2 1 6 6 H 1.09000 * 111.00863 * 277.43010 * 5 4 2 7 7 N 1.46904 * 111.00270 * 153.58009 * 5 4 2 8 8 C 1.46899 * 110.99753 * 161.35445 * 7 5 4 9 9 C 1.53001 * 109.46958 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46892 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46892 * 179.97438 * 10 9 8 12 12 C 1.53782 * 113.61357 * 274.13218 * 11 10 9 13 13 C 1.53951 * 87.02017 * 220.04890 * 12 11 10 14 14 C 1.53780 * 87.11299 * 25.36604 * 13 12 11 15 15 C 1.54915 * 101.57970 * 35.50676 * 5 4 2 16 16 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 17 17 C 1.34778 * 125.65105 * 59.55700 * 16 2 1 18 18 O 1.21280 * 119.99826 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00118 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46851 * 179.97438 * 19 17 16 21 21 C 1.76205 * 100.00040 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99585 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00068 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99516 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00074 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47007 * 90.00339 * 25 23 21 27 27 H 1.48500 * 109.47147 * 210.00374 * 25 23 21 28 28 H 1.48504 * 109.47205 * 330.00519 * 25 23 21 29 29 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 30 30 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 31 31 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 32 32 H 1.08998 * 110.73022 * 215.59048 * 4 2 1 33 33 H 1.09008 * 110.71652 * 338.86563 * 4 2 1 34 34 H 1.00899 * 110.99713 * 285.30055 * 7 5 4 35 35 H 1.09002 * 109.47341 * 299.99844 * 8 7 5 36 36 H 1.08999 * 109.47257 * 59.99987 * 8 7 5 37 37 H 1.08995 * 109.47325 * 299.99794 * 9 8 7 38 38 H 1.08999 * 109.47005 * 60.00007 * 9 8 7 39 39 H 1.09002 * 109.47331 * 299.99972 * 10 9 8 40 40 H 1.08999 * 109.47333 * 60.00155 * 10 9 8 41 41 H 1.08995 * 112.85042 * 45.33323 * 11 10 9 42 42 H 1.08997 * 113.61650 * 334.56987 * 12 11 10 43 43 H 1.09001 * 113.60852 * 105.47495 * 12 11 10 44 44 H 1.09004 * 113.53873 * 270.81485 * 13 12 11 45 45 H 1.09001 * 113.74206 * 139.94649 * 13 12 11 46 46 H 1.09001 * 113.61237 * 220.08983 * 14 13 12 47 47 H 1.08998 * 113.61412 * 89.18652 * 14 13 12 48 48 H 1.08998 * 110.36803 * 204.15086 * 15 5 4 49 49 H 1.09004 * 110.45685 * 81.87310 * 15 5 4 50 50 H 1.08998 * 109.47243 * 299.99822 * 19 17 16 51 51 H 1.08994 * 109.47245 * 60.00184 * 19 17 16 52 52 H 0.97006 * 119.99372 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 6 2.3519 -2.1704 0.6896 6 1 1.4452 -2.7745 0.6568 7 7 3.3965 -2.8349 1.4802 8 6 3.3757 -4.2879 1.2645 9 6 4.4755 -4.9436 2.1020 10 6 4.4542 -6.4568 1.8768 11 6 5.5544 -7.1124 2.7138 12 6 6.9252 -7.1389 2.0173 13 6 7.0991 -8.5572 2.5902 14 6 5.5644 -8.6476 2.6242 15 6 2.8569 -1.8488 -0.7392 16 7 2.0300 -0.7124 -1.1848 17 6 1.7754 -0.3812 -2.4662 18 8 1.0793 0.5796 -2.7173 19 6 2.3557 -1.2047 -3.5869 20 16 1.8357 -0.5121 -5.1763 21 6 2.6334 -1.6351 -6.2751 22 1 3.2258 -2.4475 -5.8807 23 6 2.5015 -1.4749 -7.6475 24 7 3.0978 -2.3135 -8.4683 25 14 1.4775 -0.0693 -8.3296 26 1 2.3409 1.1231 -8.5239 27 1 0.8894 -0.4721 -9.6323 28 1 0.3883 0.2585 -7.3749 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5206 -0.8861 31 1 -0.3634 0.5071 0.8939 32 1 2.9657 -0.2853 1.6179 33 1 1.2917 -0.7917 2.0190 34 1 4.3063 -2.4516 1.2720 35 1 2.4056 -4.6856 1.5626 36 1 3.5471 -4.5011 0.2094 37 1 5.4454 -4.5459 1.8035 38 1 4.3045 -4.7304 3.1572 39 1 3.4843 -6.8549 2.1751 40 1 4.6254 -6.6696 0.8216 41 1 5.5910 -6.7345 3.7355 42 1 6.8628 -7.1121 0.9294 43 1 7.6334 -6.4146 2.4197 44 1 7.5595 -8.5742 3.5781 45 1 7.5625 -9.2575 1.8952 46 1 5.1757 -9.1396 3.5158 47 1 5.1293 -9.0341 1.7026 48 1 2.7089 -2.7062 -1.3958 49 1 3.9094 -1.5663 -0.7167 50 1 3.4437 -1.1905 -3.5225 51 1 2.0003 -2.2318 -3.5049 52 1 3.0053 -2.2018 -9.4274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755671602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -53.850640 kcal Electronic energy + Delta-G solvation = -26878.034608 eV Core-core repulsion = 23195.490082 eV Total energy + Delta-G solvation = -3682.544527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36978 -39.84681 -39.04694 -36.77189 -34.71034 -33.82048 -33.36555 -30.54237 -30.22068 -27.89223 -27.31417 -26.77550 -26.42107 -23.98206 -23.23404 -22.19565 -21.56127 -20.40755 -20.20324 -19.61141 -18.13425 -17.41516 -17.15783 -17.02383 -16.55259 -16.31978 -16.00824 -15.86509 -15.62779 -15.25553 -14.93811 -14.85208 -14.42518 -14.31978 -14.11991 -13.96796 -13.69137 -13.39175 -13.38186 -13.28912 -13.18138 -13.13383 -13.01687 -12.96317 -12.64189 -12.36611 -12.22224 -12.07263 -11.93165 -11.88826 -11.60108 -11.57097 -11.35121 -11.20386 -10.97348 -10.94729 -10.79916 -10.58930 -9.81503 -9.40259 -9.04999 -8.55009 -6.26667 0.91993 1.28913 1.42182 1.47884 1.50365 1.98773 2.22134 2.62930 2.83124 3.03538 3.45455 3.53684 3.74558 3.79593 3.82910 3.88162 3.99701 4.02137 4.08854 4.11386 4.22044 4.26383 4.31218 4.33739 4.39731 4.48468 4.57931 4.67721 4.72130 4.73459 4.79716 4.87281 4.90543 4.93948 4.96396 4.97612 5.04308 5.08925 5.12405 5.13339 5.16362 5.29981 5.33791 5.45036 5.47993 5.51698 5.67144 5.70103 6.01701 6.07170 6.31480 6.42826 6.89846 7.03726 8.57467 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.002273 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.242735 B =12316.013180 C =14973.264856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.100 4.100 5 C 0.089 3.911 6 H 0.095 0.905 7 N -0.669 5.669 8 C 0.055 3.945 9 C -0.106 4.106 10 C -0.107 4.107 11 C -0.107 4.107 12 C -0.141 4.141 13 C -0.146 4.146 14 C -0.142 4.142 15 C 0.064 3.936 16 N -0.609 5.609 17 C 0.547 3.453 18 O -0.556 6.556 19 C -0.103 4.103 20 S -0.171 6.171 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.046 3.954 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.257 1.257 28 H -0.238 1.238 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.349 0.651 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -7.942 29.522 30.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.086 0.914 4 C -0.138 4.138 5 C -0.023 4.023 6 H 0.113 0.887 7 N -0.299 5.299 8 C -0.074 4.074 9 C -0.144 4.144 10 C -0.145 4.145 11 C -0.125 4.125 12 C -0.179 4.179 13 C -0.184 4.184 14 C -0.179 4.179 15 C -0.061 4.061 16 N -0.343 5.343 17 C 0.335 3.665 18 O -0.434 6.434 19 C -0.254 4.254 20 S 0.056 5.944 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.736 3.264 26 H -0.186 1.186 27 H -0.181 1.181 28 H -0.162 1.162 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.502 -6.619 29.490 30.327 hybrid contribution 1.105 -0.957 -1.807 2.325 sum 3.606 -7.576 27.683 28.927 Atomic orbital electron populations 1.22111 0.94740 1.02257 1.02581 1.21795 0.94932 0.96479 0.84249 0.91377 1.22655 1.03056 0.93218 0.94903 1.22672 0.95863 0.95850 0.87876 0.88705 1.60595 1.08310 1.04022 1.56992 1.22070 1.00233 0.87185 0.97880 1.21447 0.97934 0.94484 1.00573 1.21501 0.98711 0.94799 0.99472 1.22538 0.94798 0.95432 0.99748 1.23022 0.97438 0.97314 1.00105 1.22876 0.96635 0.97319 1.01542 1.22966 0.96469 0.96317 1.02154 1.23399 0.95567 0.88556 0.98556 1.48397 1.50859 1.31108 1.03981 1.19612 0.80022 0.84159 0.82748 1.90672 1.39498 1.29737 1.83501 1.23205 1.04682 1.02827 0.94658 1.84689 1.68569 1.42650 0.98529 1.22425 1.35935 1.15476 0.93862 0.92108 1.25563 0.95789 0.98407 0.96169 1.70014 1.43303 1.37832 1.04186 0.85868 0.80901 0.79676 0.79942 1.18602 1.18117 1.16165 0.92349 0.94440 0.89174 0.88985 0.87774 0.83096 0.90908 0.95440 0.92012 0.91083 0.91683 0.92538 0.88947 0.90684 0.91482 0.89775 0.91713 0.91252 0.90456 0.90866 0.90071 0.87637 0.87639 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.06 71.98 0.65 -2.85 16 2 C 0.13 2.73 3.49 45.34 0.16 2.89 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.10 -1.34 6.19 31.78 0.20 -1.15 16 5 C 0.09 1.26 3.32 46.31 0.15 1.41 16 6 H 0.09 1.42 7.92 -2.39 -0.02 1.40 16 7 N -0.67 -7.86 6.38 -484.39 -3.09 -10.94 16 8 C 0.06 0.66 5.55 86.30 0.48 1.13 16 9 C -0.11 -1.11 5.47 30.60 0.17 -0.94 16 10 C -0.11 -1.16 5.04 30.60 0.15 -1.01 16 11 C -0.11 -1.13 3.64 -10.26 -0.04 -1.17 16 12 C -0.14 -1.62 7.65 31.18 0.24 -1.38 16 13 C -0.15 -1.58 8.09 31.18 0.25 -1.33 16 14 C -0.14 -1.54 7.65 31.12 0.24 -1.30 16 15 C 0.06 1.22 6.27 86.86 0.54 1.77 16 16 N -0.61 -16.14 3.08 -788.06 -2.43 -18.56 16 17 C 0.55 20.15 7.65 87.66 0.67 20.82 16 18 O -0.56 -24.66 14.76 -3.03 -0.04 -24.71 16 19 C -0.10 -4.10 5.16 71.24 0.37 -3.73 16 20 S -0.17 -8.84 18.55 -56.49 -1.05 -9.89 16 21 C -0.53 -31.21 10.04 67.95 0.68 -30.53 16 22 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 23 C 0.05 2.74 5.50 84.86 0.47 3.21 16 24 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 25 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 26 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.11 6.75 -2.39 -0.02 1.10 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.12 7.83 -2.38 -0.02 1.10 16 34 H 0.35 3.64 8.31 -89.70 -0.74 2.89 16 35 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 36 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.70 7.87 -2.39 -0.02 0.69 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.95 7.92 -2.39 -0.02 0.93 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 48 H 0.07 1.48 7.48 -2.39 -0.02 1.46 16 49 H 0.08 1.39 7.81 -2.38 -0.02 1.37 16 50 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 51 H 0.11 3.95 7.85 -2.40 -0.02 3.93 16 52 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -71.45 421.42 1.07 -70.38 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.09 Total: 16.32 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.38 Total: -14.16 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -5.21 Total: -85.20 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -71.45 1.07 -70.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.526 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds