Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00274 * 2 1 4 4 H 1.48503 * 109.47043 * 269.99742 * 3 2 1 5 5 H 1.48504 * 109.46807 * 29.99387 * 3 2 1 6 6 H 1.48495 * 109.47248 * 149.99620 * 3 2 1 7 7 C 1.37883 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99981 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46613 * 179.97438 * 9 7 2 11 11 C 1.46492 * 120.00239 * 269.99998 * 10 9 7 12 12 C 1.53003 * 109.47433 * 270.00172 * 11 10 9 13 13 N 1.46900 * 109.47308 * 179.97438 * 12 11 10 14 14 C 1.47018 * 110.99813 * 293.63357 * 13 12 11 15 15 C 1.53096 * 109.25294 * 177.60850 * 14 13 12 16 16 O 1.43006 * 109.26377 * 56.85453 * 15 14 13 17 17 C 1.43022 * 113.73684 * 301.32605 * 16 15 14 18 18 C 1.47013 * 110.99876 * 170.00339 * 13 12 11 19 19 C 1.34780 * 119.99876 * 90.00650 * 10 9 7 20 20 O 1.21274 * 120.00170 * 179.97438 * 19 10 9 21 21 C 1.50706 * 119.99931 * 359.97438 * 19 10 9 22 22 O 1.42897 * 109.47084 * 180.02562 * 21 19 10 23 23 C 1.42898 * 114.00017 * 179.97438 * 22 21 19 24 24 C 1.54894 * 110.48190 * 93.24436 * 23 22 21 25 25 C 1.55238 * 102.58338 * 156.67678 * 24 23 22 26 26 C 1.54266 * 104.23333 * 322.08174 * 25 24 23 27 27 C 1.53869 * 106.59800 * 23.61579 * 26 25 24 28 28 H 0.96998 * 120.00435 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46949 * 60.00302 * 9 7 2 30 30 H 1.09001 * 109.47576 * 299.99923 * 9 7 2 31 31 H 1.09004 * 109.47283 * 30.00132 * 11 10 9 32 32 H 1.09000 * 109.47431 * 150.00749 * 11 10 9 33 33 H 1.08997 * 109.47509 * 300.00189 * 12 11 10 34 34 H 1.09008 * 109.46640 * 59.99882 * 12 11 10 35 35 H 1.08994 * 109.51057 * 297.54749 * 14 13 12 36 36 H 1.09000 * 109.50243 * 57.67709 * 14 13 12 37 37 H 1.09006 * 109.51064 * 296.91274 * 15 14 13 38 38 H 1.09004 * 109.54090 * 176.81012 * 15 14 13 39 39 H 1.08997 * 109.51046 * 298.73637 * 17 16 15 40 40 H 1.08993 * 109.54556 * 178.62013 * 17 16 15 41 41 H 1.09001 * 109.50732 * 302.32878 * 18 13 12 42 42 H 1.09007 * 109.50829 * 62.41147 * 18 13 12 43 43 H 1.08999 * 109.47134 * 60.00350 * 21 19 10 44 44 H 1.08999 * 109.46878 * 300.00538 * 21 19 10 45 45 H 1.09002 * 110.43427 * 330.70321 * 23 22 21 46 46 H 1.08996 * 110.75388 * 275.06031 * 24 23 22 47 47 H 1.08993 * 110.76071 * 38.44257 * 24 23 22 48 48 H 1.09005 * 110.46917 * 203.39204 * 25 24 23 49 49 H 1.09007 * 110.58541 * 80.83124 * 25 24 23 50 50 H 1.08999 * 110.03060 * 264.32313 * 26 25 24 51 51 H 1.09006 * 110.06829 * 142.91691 * 26 25 24 52 52 H 1.09001 * 110.02983 * 240.71432 * 27 26 25 53 53 H 1.08996 * 110.07773 * 119.30576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1694 -1.2681 12 6 1.7484 -5.3007 -1.7099 13 7 2.2254 -5.8586 -2.9823 14 6 2.1067 -4.8732 -4.0670 15 6 2.6686 -5.4738 -5.3583 16 8 1.9762 -6.6898 -5.6534 17 6 2.0713 -7.6723 -4.6184 18 6 1.5034 -7.0940 -3.3196 19 6 2.6408 -4.1250 1.1678 20 8 3.4285 -5.0470 1.1678 21 6 2.1514 -3.5519 2.4729 22 8 2.7551 -4.2574 3.5591 23 6 2.3565 -3.7897 4.8491 24 6 1.1521 -4.6097 5.3747 25 6 1.2561 -4.4163 6.9114 26 6 2.7721 -4.4426 7.1953 27 6 3.4718 -4.0441 5.8841 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6239 -2.5568 0.8903 31 1 2.6868 -3.3878 -2.0278 32 1 3.6884 -4.5595 -1.1377 33 1 1.7405 -6.0823 -0.9503 34 1 0.7388 -4.9106 -1.8402 35 1 1.0575 -4.6158 -4.2117 36 1 2.6697 -3.9767 -3.8074 37 1 3.7310 -5.6816 -5.2309 38 1 2.5314 -4.7687 -6.1782 39 1 3.1163 -7.9440 -4.4695 40 1 1.5019 -8.5572 -4.9023 41 1 1.6258 -7.8185 -2.5144 42 1 0.4443 -6.8722 -3.4516 43 1 1.0677 -3.6536 2.5307 44 1 2.4210 -2.4973 2.5304 45 1 2.1078 -2.7292 4.8093 46 1 0.2141 -4.2051 4.9945 47 1 1.2559 -5.6618 5.1097 48 1 0.7561 -5.2325 7.4330 49 1 0.8291 -3.4578 7.2069 50 1 3.0790 -5.4454 7.4926 51 1 3.0179 -3.7287 7.9815 52 1 4.1183 -4.8535 5.5450 53 1 4.0570 -3.1367 6.0330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343063210.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -147.483423 kcal Electronic energy + Delta-G solvation = -30737.549143 eV Core-core repulsion = 26608.191523 eV Total energy + Delta-G solvation = -4129.357620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.11237 -40.45364 -39.61995 -37.51175 -36.71785 -36.41208 -34.57576 -32.25555 -31.62607 -29.79105 -29.52471 -29.04045 -27.99341 -26.55364 -25.05480 -24.91385 -23.24985 -21.68929 -21.38807 -21.23376 -20.16953 -18.68721 -18.35411 -17.88705 -17.67895 -17.13594 -16.85561 -16.80141 -16.54949 -16.31683 -16.09615 -15.96914 -15.74991 -15.34664 -15.16397 -14.62385 -14.57690 -14.33100 -14.20427 -14.04609 -13.64242 -13.52855 -13.27208 -13.15006 -13.09502 -12.86760 -12.66151 -12.53435 -12.43738 -12.33374 -12.14312 -12.09178 -11.98294 -11.89916 -11.75090 -11.56521 -11.46977 -11.31172 -10.81057 -10.72376 -10.60306 -10.49153 -9.64433 -9.44401 -8.24124 -6.38935 1.40325 1.43234 1.51642 1.61838 1.83761 2.38556 2.66723 2.92358 3.05233 3.06884 3.61019 3.69049 3.71338 3.82933 3.91891 3.96913 4.03338 4.07232 4.15933 4.18113 4.30344 4.32045 4.36150 4.38646 4.42371 4.52378 4.56964 4.57710 4.66895 4.69938 4.75139 4.77935 4.79021 4.80248 4.89119 4.92387 4.93866 4.99723 5.06458 5.12544 5.16893 5.19939 5.27258 5.46065 5.58346 5.71513 5.85530 5.89902 5.99960 6.15167 6.19836 6.46371 6.74617 7.21766 7.35310 8.81566 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007708 B = 0.003314 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.607562 B = 8447.186041 C =11384.155806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.252 3.748 10 N -0.594 5.594 11 C 0.131 3.869 12 C 0.060 3.940 13 N -0.539 5.539 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.066 3.934 18 C 0.016 3.984 19 C 0.515 3.485 20 O -0.578 6.578 21 C 0.060 3.940 22 O -0.381 6.381 23 C 0.067 3.933 24 C -0.148 4.148 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.122 4.122 28 H 0.269 0.731 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.062 0.938 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -9.423 2.682 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.071 0.929 9 C 0.132 3.868 10 N -0.326 5.326 11 C 0.007 3.993 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.117 4.117 15 C -0.009 4.009 16 O -0.321 6.321 17 C -0.010 4.010 18 C -0.112 4.112 19 C 0.303 3.697 20 O -0.459 6.459 21 C -0.020 4.020 22 O -0.300 6.300 23 C 0.009 3.991 24 C -0.186 4.186 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.160 4.160 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.101 0.899 52 H 0.081 0.919 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.879 -10.073 2.538 10.556 hybrid contribution -0.745 1.628 0.038 1.791 sum 1.135 -8.445 2.576 8.902 Atomic orbital electron populations 1.69992 1.07142 1.28319 1.50094 1.25587 0.95508 1.02107 0.94160 0.85614 0.78681 0.79326 0.78461 1.19997 1.20470 1.19652 1.21643 0.93325 0.91477 1.52396 0.92895 1.19155 0.87317 0.82668 0.97705 1.48096 1.45350 1.34372 1.04800 1.21200 0.97843 0.95341 0.84889 1.22226 0.96253 0.97033 0.91384 1.62150 1.56419 1.05784 1.02145 1.22927 1.00331 0.96104 0.92316 1.22746 0.96084 0.86172 0.95897 1.87941 1.75244 1.26005 1.42944 1.22780 1.01674 0.91278 0.85286 1.22872 0.96057 0.92422 0.99809 1.20493 0.80796 0.82323 0.86066 1.90599 1.36385 1.30841 1.88044 1.22125 0.98096 0.96461 0.85269 1.87953 1.68966 1.59174 1.13891 1.23391 0.95787 0.97886 0.82014 1.23049 0.97632 1.00532 0.97344 1.22330 0.96482 1.02920 0.93720 1.22075 0.94837 1.02447 0.95978 1.22206 0.97239 1.02273 0.94299 0.92188 0.95816 0.94989 0.90284 0.91087 0.91513 0.95130 0.94673 0.89268 0.91698 0.86610 0.91825 0.86197 0.88933 0.94468 0.89792 0.89837 0.91127 0.91321 0.91494 0.90002 0.90554 0.90906 0.89923 0.91890 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.63 13.29 21.45 0.28 -48.34 16 2 C 0.03 1.39 5.46 84.66 0.46 1.85 16 3 Si 0.95 40.53 29.54 68.60 2.03 42.56 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.55 -27.72 9.28 25.60 0.24 -27.49 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.25 11.68 4.97 85.63 0.43 12.11 16 10 N -0.59 -25.19 2.46 -826.16 -2.03 -27.22 16 11 C 0.13 4.93 5.34 86.38 0.46 5.39 16 12 C 0.06 2.00 5.28 86.30 0.46 2.46 16 13 N -0.54 -15.45 4.73 -895.18 -4.23 -19.68 16 14 C 0.01 0.30 5.44 86.31 0.47 0.77 16 15 C 0.07 1.50 7.01 72.01 0.50 2.00 16 16 O -0.40 -9.75 10.83 -148.98 -1.61 -11.36 16 17 C 0.07 1.36 7.01 72.02 0.50 1.86 16 18 C 0.02 0.39 5.64 86.32 0.49 0.88 16 19 C 0.51 22.54 7.75 87.66 0.68 23.22 16 20 O -0.58 -28.05 16.08 16.03 0.26 -27.79 16 21 C 0.06 2.33 4.82 71.24 0.34 2.68 16 22 O -0.38 -14.37 9.59 -129.94 -1.25 -15.62 16 23 C 0.07 1.92 3.33 31.67 0.11 2.03 16 24 C -0.15 -3.62 6.65 32.01 0.21 -3.40 16 25 C -0.12 -2.13 6.84 31.79 0.22 -1.91 16 26 C -0.12 -2.09 6.80 31.32 0.21 -1.88 16 27 C -0.12 -2.97 6.56 31.32 0.21 -2.77 16 28 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 30 H 0.03 1.52 6.44 -2.39 -0.02 1.50 16 31 H 0.08 2.94 6.44 -2.39 -0.02 2.93 16 32 H 0.07 2.84 7.42 -2.39 -0.02 2.82 16 33 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 34 H 0.03 1.06 8.12 -2.38 -0.02 1.04 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 2.39 6.38 -2.39 -0.02 2.38 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 42 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 43 H 0.08 3.05 7.40 -2.39 -0.02 3.03 16 44 H 0.08 3.36 7.96 -2.39 -0.02 3.34 16 45 H 0.07 1.98 7.84 -2.39 -0.02 1.97 16 46 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 52 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 53 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.42 418.23 0.29 -62.13 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.86 Total: 27.51 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 5.98 Total: 17.81 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -5.98 Total: -95.24 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -2.60 Total: -54.77 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -62.42 0.29 -62.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343063210.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.357 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds