Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99553 * 2 1 4 4 H 1.48491 * 109.47406 * 239.99832 * 3 2 1 5 5 H 1.48494 * 109.47218 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46859 * 120.00131 * 3 2 1 7 7 C 1.37872 * 120.00703 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00456 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46971 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99992 * 179.97438 * 12 11 10 14 14 O 1.21350 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.49453 * 120.00244 * 179.97438 * 13 12 11 16 16 O 1.21352 * 119.99721 * 358.80812 * 15 13 12 17 17 N 1.34775 * 119.99969 * 178.80826 * 15 13 12 18 18 C 1.46494 * 120.00302 * 4.80675 * 17 15 13 19 19 C 1.52998 * 109.47116 * 82.89712 * 18 17 15 20 20 O 1.42898 * 109.46912 * 65.06117 * 19 18 17 21 21 C 1.46505 * 119.99661 * 184.80837 * 17 15 13 22 22 C 1.53006 * 109.46879 * 83.63719 * 21 17 15 23 23 C 1.53000 * 109.47076 * 66.67958 * 22 21 17 24 24 C 1.52999 * 109.47195 * 179.97438 * 23 22 21 25 25 C 1.53005 * 109.47102 * 299.99951 * 24 23 22 26 26 C 1.53000 * 109.47056 * 59.99963 * 25 24 23 27 27 C 1.52999 * 109.47195 * 299.99979 * 26 25 24 28 28 H 0.96995 * 120.00515 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46860 * 60.00114 * 9 7 2 30 30 H 1.08998 * 109.47071 * 300.00219 * 9 7 2 31 31 H 1.08995 * 109.46997 * 60.00561 * 10 9 7 32 32 H 1.08998 * 109.47255 * 299.99934 * 10 9 7 33 33 H 1.08999 * 109.47141 * 59.99777 * 11 10 9 34 34 H 1.09005 * 109.46829 * 300.00304 * 11 10 9 35 35 H 0.96992 * 120.00223 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.47325 * 202.89924 * 18 17 15 37 37 H 1.09000 * 109.47138 * 322.89832 * 18 17 15 38 38 H 1.09001 * 109.47155 * 185.05626 * 19 18 17 39 39 H 1.08994 * 109.47199 * 305.05684 * 19 18 17 40 40 H 0.96703 * 113.99929 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47193 * 323.64268 * 21 17 15 42 42 H 1.08994 * 109.46780 * 203.63111 * 21 17 15 43 43 H 1.08993 * 109.47494 * 306.68080 * 22 21 17 44 44 H 1.08998 * 109.47379 * 299.99830 * 23 22 21 45 45 H 1.09005 * 109.47038 * 60.00016 * 23 22 21 46 46 H 1.09000 * 109.47151 * 180.02562 * 24 23 22 47 47 H 1.08993 * 109.47202 * 60.00228 * 24 23 22 48 48 H 1.09002 * 109.46782 * 300.00181 * 25 24 23 49 49 H 1.08997 * 109.47027 * 180.02562 * 25 24 23 50 50 H 1.08998 * 109.47379 * 179.97438 * 26 25 24 51 51 H 1.09005 * 109.47038 * 59.99679 * 26 25 24 52 52 H 1.09002 * 109.47449 * 300.00277 * 27 26 25 53 53 H 1.08993 * 109.47374 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 7 2.4327 -6.1004 -0.0006 13 6 1.9835 -7.3712 -0.0005 14 8 0.7905 -7.5930 -0.0013 15 6 2.9548 -8.5071 -0.0004 16 8 4.1477 -8.2854 -0.0223 17 7 2.5057 -9.7776 0.0240 18 6 1.0682 -10.0482 -0.0559 19 6 0.6258 -10.0266 -1.5204 20 8 1.2513 -11.1024 -2.2228 21 6 3.4554 -10.8881 0.1304 22 6 3.8166 -11.1112 1.6004 23 6 2.5837 -11.6066 2.3590 24 6 2.9450 -11.8303 3.8288 25 6 4.0583 -12.8752 3.9270 26 6 5.2912 -12.3797 3.1684 27 6 4.9299 -12.1561 1.6986 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8721 -3.6042 0.8895 32 1 2.8722 -3.6042 -0.8905 33 1 0.8542 -5.0446 -0.8914 34 1 0.8536 -5.0450 0.8886 35 1 3.3863 -5.9232 -0.0002 36 1 0.8586 -11.0283 0.3726 37 1 0.5234 -9.2848 0.4995 38 1 -0.4571 -10.1384 -1.5745 39 1 0.9163 -9.0790 -1.9737 40 1 1.0162 -11.1499 -3.1595 41 1 4.3574 -10.6501 -0.4332 42 1 3.0024 -11.7934 -0.2738 43 1 4.1589 -10.1729 2.0369 44 1 1.7904 -10.8625 2.2887 45 1 2.2414 -12.5450 1.9225 46 1 2.0668 -12.1837 4.3691 47 1 3.2876 -10.8922 4.2655 48 1 3.7157 -13.8133 3.4903 49 1 4.3154 -13.0349 4.9742 50 1 6.0845 -13.1239 3.2388 51 1 5.6338 -11.4416 3.6051 52 1 4.5872 -13.0942 1.2619 53 1 5.8080 -11.8027 1.1583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343146530.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = -170.295965 kcal Electronic energy + Delta-G solvation = -30446.926517 eV Core-core repulsion = 26316.579671 eV Total energy + Delta-G solvation = -4130.346846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06920 -40.13354 -39.13042 -38.24679 -37.15227 -36.24363 -35.17349 -33.05456 -32.84220 -31.60740 -30.12946 -29.06031 -27.53122 -25.62942 -24.55437 -23.45489 -23.26105 -22.39539 -22.21297 -20.69807 -20.57167 -18.82328 -18.52302 -18.43921 -17.82281 -17.44921 -16.84145 -16.60419 -16.45478 -16.22940 -16.02411 -15.49936 -15.26171 -15.14880 -15.02113 -14.79033 -14.66864 -14.33851 -14.28647 -13.79387 -13.58702 -13.52609 -13.49116 -13.16770 -13.08043 -12.73828 -12.71087 -12.57760 -12.45235 -12.42521 -12.18449 -12.00631 -11.81933 -11.70185 -11.54089 -11.38343 -11.24799 -11.19362 -10.97328 -10.90534 -10.54644 -10.39915 -10.29276 -9.77011 -8.19781 -6.30618 0.29707 1.25816 1.41682 1.44019 1.51933 2.07429 2.37995 2.44188 3.13931 3.24029 3.39884 3.71194 3.80358 3.84879 4.07569 4.08972 4.17665 4.18826 4.22816 4.31308 4.41657 4.46715 4.52087 4.53004 4.56041 4.64029 4.65036 4.73997 4.75093 4.80063 4.88433 4.91137 4.99736 5.01213 5.14039 5.15563 5.18474 5.25173 5.29145 5.30385 5.38075 5.40897 5.46196 5.51058 5.59922 5.70328 5.83906 5.90984 6.18450 6.24048 6.64983 6.84613 6.85861 6.89517 7.38573 8.91752 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.002051 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.969440 B =13648.250822 C =14628.651245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.107 4.107 11 C 0.130 3.870 12 N -0.688 5.688 13 C 0.501 3.499 14 O -0.531 6.531 15 C 0.504 3.496 16 O -0.545 6.545 17 N -0.563 5.563 18 C 0.089 3.911 19 C 0.070 3.930 20 O -0.584 6.584 21 C 0.125 3.875 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.107 4.107 28 H 0.264 0.736 29 H -0.003 1.003 30 H -0.003 1.003 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.394 0.606 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.049 0.951 52 H 0.078 0.922 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -31.072 2.107 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.145 4.145 11 C 0.007 3.993 12 N -0.340 5.340 13 C 0.282 3.718 14 O -0.410 6.410 15 C 0.286 3.714 16 O -0.423 6.423 17 N -0.294 5.294 18 C -0.032 4.032 19 C -0.009 4.009 20 O -0.392 6.392 21 C 0.003 3.997 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.016 0.984 30 H 0.015 0.985 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.253 0.747 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.243 0.757 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.067 0.933 52 H 0.096 0.904 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.451 -31.115 2.674 31.702 hybrid contribution 0.232 1.628 -0.615 1.756 sum 5.683 -29.487 2.059 30.100 Atomic orbital electron populations 1.70078 1.07737 1.27852 1.51531 1.25967 0.95773 1.03348 0.94807 0.85513 0.78250 0.78192 0.79164 1.19200 1.21011 1.19220 1.21644 0.93657 0.92192 1.50653 0.91914 1.18917 0.94291 0.92470 0.95455 1.21643 0.98665 0.92123 1.02043 1.21464 0.91465 0.84306 1.02088 1.45936 1.12188 1.04754 1.71078 1.20303 0.88704 0.84647 0.78139 1.90606 1.16765 1.83944 1.49658 1.20116 0.88033 0.84827 0.78435 1.90738 1.16897 1.84721 1.49923 1.47779 1.09074 1.04266 1.68300 1.22531 0.79123 1.05012 0.96553 1.22486 0.97191 0.88728 0.92469 1.86400 1.73299 1.51682 1.27819 1.21751 0.92697 0.88571 0.96642 1.21502 0.96813 0.98831 0.94608 1.21610 0.96511 1.01291 0.95433 1.21532 0.99017 0.99015 0.96251 1.21526 0.94938 0.98579 1.00337 1.21519 0.98074 1.01016 0.95034 1.21472 0.97261 0.98661 0.97111 0.92768 0.98448 0.98481 0.91669 0.91661 0.91542 0.91559 0.74661 0.87857 0.86035 0.90852 0.95401 0.75653 0.91299 0.87753 0.93407 0.92733 0.90508 0.91291 0.93502 0.91069 0.91755 0.90908 0.93260 0.90376 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.44 0.28 -55.88 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.11 -4.10 5.27 30.60 0.16 -3.94 16 11 C 0.13 4.33 5.67 86.38 0.49 4.82 16 12 N -0.69 -20.14 5.55 -464.41 -2.58 -22.72 16 13 C 0.50 14.46 7.60 87.27 0.66 15.13 16 14 O -0.53 -16.03 12.15 -3.25 -0.04 -16.07 16 15 C 0.50 13.67 7.61 87.27 0.66 14.33 16 16 O -0.54 -16.97 16.13 -3.25 -0.05 -17.03 16 17 N -0.56 -12.09 2.20 -823.39 -1.81 -13.90 16 18 C 0.09 1.65 4.33 86.38 0.37 2.02 16 19 C 0.07 1.24 6.86 71.98 0.49 1.73 16 20 O -0.58 -9.22 13.56 -148.98 -2.02 -11.24 16 21 C 0.12 2.27 4.76 86.38 0.41 2.68 16 22 C -0.10 -1.64 2.34 -10.79 -0.03 -1.67 16 23 C -0.11 -1.58 4.48 30.59 0.14 -1.45 16 24 C -0.12 -1.66 5.92 30.60 0.18 -1.47 16 25 C -0.12 -1.35 5.92 30.60 0.18 -1.16 16 26 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 27 C -0.11 -1.44 5.20 30.60 0.16 -1.28 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.42 11.35 7.94 -92.71 -0.74 10.61 16 36 H 0.10 1.48 6.99 -2.39 -0.02 1.46 16 37 H 0.12 2.61 5.22 -4.90 -0.03 2.59 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.03 0.61 7.35 -2.39 -0.02 0.60 16 40 H 0.39 3.23 9.12 -74.06 -0.68 2.55 16 41 H 0.07 1.46 7.55 -2.39 -0.02 1.44 16 42 H 0.10 1.59 7.97 -2.39 -0.02 1.57 16 43 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 44 H 0.05 0.88 6.51 -2.39 -0.02 0.86 16 45 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.63 418.27 0.20 -67.43 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.53 Total: 23.26 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.92 Total: 0.30 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.10 Total: -92.50 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -2.11 Total: -44.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -67.63 0.20 -67.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343146530.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.869 kcal (2) G-P(sol) polarization free energy of solvation -67.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds