Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99413 * 2 1 4 4 C 1.52998 * 109.46957 * 304.38064 * 3 2 1 5 5 N 1.46500 * 109.47551 * 300.57108 * 4 3 2 6 6 C 1.34783 * 120.00047 * 185.27765 * 5 4 3 7 7 O 1.21342 * 119.99856 * 0.02562 * 6 5 4 8 8 C 1.49450 * 119.99680 * 179.97438 * 6 5 4 9 9 O 1.21341 * 119.99998 * 0.02562 * 8 6 5 10 10 N 1.34773 * 119.99667 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00197 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47536 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46967 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.46953 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99552 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99914 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47158 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47158 * 120.00378 * 18 16 14 21 21 H 1.48507 * 109.46811 * 239.99525 * 18 16 14 22 22 C 1.52999 * 109.47304 * 64.38548 * 3 2 1 23 23 C 1.52998 * 109.47035 * 60.00106 * 22 3 2 24 24 C 1.52998 * 109.47401 * 59.99886 * 23 22 3 25 25 C 1.53004 * 109.47037 * 59.99811 * 24 23 22 26 26 C 1.52999 * 109.47119 * 300.00063 * 24 23 22 27 27 C 1.53001 * 109.46874 * 184.38895 * 3 2 1 28 28 H 1.09006 * 109.46997 * 184.79057 * 1 2 3 29 29 H 1.08991 * 109.47596 * 304.79405 * 1 2 3 30 30 H 1.09007 * 109.47058 * 64.79821 * 1 2 3 31 31 H 1.09001 * 109.47087 * 60.57151 * 4 3 2 32 32 H 1.08999 * 109.46962 * 180.56660 * 4 3 2 33 33 H 0.97001 * 119.99704 * 5.27310 * 5 4 3 34 34 H 0.97006 * 120.00204 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.47166 * 300.00999 * 11 10 8 36 36 H 1.09002 * 109.46919 * 60.00136 * 11 10 8 37 37 H 1.08995 * 109.47150 * 300.00325 * 12 11 10 38 38 H 1.09002 * 109.46915 * 60.00316 * 12 11 10 39 39 H 1.09001 * 109.47427 * 299.99322 * 13 12 11 40 40 H 1.08992 * 109.47744 * 60.00403 * 13 12 11 41 41 H 0.97010 * 119.99683 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46720 * 179.97438 * 22 3 2 43 43 H 1.08998 * 109.46885 * 299.99358 * 22 3 2 44 44 H 1.08999 * 109.46613 * 180.02562 * 23 22 3 45 45 H 1.09002 * 109.47170 * 299.99484 * 23 22 3 46 46 H 1.08996 * 109.47026 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47123 * 299.99830 * 25 24 23 48 48 H 1.08996 * 109.47122 * 60.00279 * 25 24 23 49 49 H 1.09000 * 109.46763 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.46720 * 299.99954 * 26 24 23 51 51 H 1.09000 * 109.47332 * 180.02562 * 26 24 23 52 52 H 1.08999 * 109.47680 * 59.99366 * 27 3 2 53 53 H 1.09002 * 109.47146 * 180.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4733 2.1027 -1.1905 5 7 1.8085 1.4067 -2.4353 6 6 1.5286 1.9784 -3.6234 7 8 0.9994 3.0697 -3.6619 8 6 1.8710 1.2686 -4.8932 9 8 2.4006 0.1775 -4.8546 10 7 1.5907 1.8400 -6.0812 11 6 1.9258 1.1441 -7.3260 12 6 1.5061 2.0039 -8.5199 13 6 1.8556 1.2767 -9.8199 14 6 1.4427 2.1239 -10.9960 15 1 0.9772 3.0846 -10.8325 16 6 1.6592 1.6724 -12.2806 17 7 2.2265 0.5027 -12.4797 18 14 1.1481 2.7228 -13.7383 19 1 0.5371 3.9847 -13.2490 20 1 2.3414 3.0377 -14.5642 21 1 0.1590 1.9806 -14.5606 22 6 1.6478 2.0251 1.3007 23 6 2.1847 1.2279 2.4911 24 6 3.7061 1.1089 2.3808 25 6 4.3283 2.5067 2.3807 26 6 4.0684 0.3894 1.0801 27 6 3.5315 1.1865 -0.1104 28 1 -0.3633 -1.0241 0.0858 29 1 -0.3634 0.5863 0.8438 30 1 -0.3633 0.4376 -0.9299 31 1 0.3906 2.1961 -1.1067 32 1 1.9242 3.0950 -1.1962 33 1 2.2319 0.5346 -2.4045 34 1 1.1670 2.7121 -6.1121 35 1 3.0008 0.9677 -7.3656 36 1 1.3997 0.1902 -7.3619 37 1 0.4313 2.1805 -8.4805 38 1 2.0326 2.9576 -8.4838 39 1 2.9304 1.0998 -9.8597 40 1 1.3288 0.3232 -9.8559 41 1 2.3786 0.1849 -13.3835 42 1 2.0915 3.0207 1.3008 43 1 0.5640 2.1099 1.3792 44 1 1.9262 1.7404 3.4177 45 1 1.7414 0.2321 2.4912 46 1 4.0885 0.5414 3.2291 47 1 3.9459 3.0746 1.5326 48 1 4.0702 3.0194 3.3074 49 1 5.4121 2.4219 2.3017 50 1 3.6251 -0.6064 1.0802 51 1 5.1522 0.3042 1.0017 52 1 3.7897 0.6739 -1.0370 53 1 3.9748 2.1823 -0.1099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343333276.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = -169.351213 kcal Electronic energy + Delta-G solvation = -30026.351757 eV Core-core repulsion = 25896.045878 eV Total energy + Delta-G solvation = -4130.305878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96744 -41.12537 -39.57946 -37.62904 -37.19842 -35.89880 -35.14036 -33.05314 -32.41745 -31.85387 -29.29868 -28.62757 -27.69709 -26.69153 -25.48574 -24.06205 -23.46627 -22.37851 -21.77635 -21.29675 -19.71733 -19.59466 -18.52689 -17.96390 -17.35659 -17.06800 -16.94833 -16.67315 -16.44085 -16.41015 -16.27510 -15.96775 -15.64453 -15.12969 -14.98081 -14.84532 -14.50616 -14.28322 -14.02059 -13.78169 -13.75110 -13.53525 -13.42944 -13.22529 -13.04703 -12.89186 -12.78733 -12.62041 -12.55571 -12.37630 -12.18973 -12.13519 -11.82563 -11.71044 -11.57033 -11.23413 -11.22560 -11.20746 -10.89618 -10.78091 -10.55692 -10.41281 -10.38998 -10.29083 -8.19783 -6.30649 0.27677 1.24005 1.41633 1.42191 1.55229 2.07485 2.41137 2.53547 2.84718 3.14236 3.38033 3.44310 3.60271 3.78093 4.07545 4.09421 4.09921 4.17364 4.21904 4.39894 4.43023 4.44533 4.47372 4.51789 4.56491 4.61658 4.63293 4.80081 4.85065 4.85697 4.90866 4.92654 4.97865 4.99758 5.05477 5.12531 5.14418 5.18824 5.21963 5.29547 5.35861 5.44630 5.48360 5.51479 5.64910 5.70320 5.84213 5.84656 6.21517 6.23230 6.29705 6.65910 6.86416 6.87958 7.38786 8.92279 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029214 B = 0.001627 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.199152 B =17206.876242 C =17282.537122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.381 6.381 3 C 0.114 3.886 4 C 0.089 3.911 5 N -0.682 5.682 6 C 0.515 3.485 7 O -0.539 6.539 8 C 0.500 3.500 9 O -0.548 6.548 10 N -0.686 5.686 11 C 0.127 3.873 12 C -0.106 4.106 13 C 0.024 3.976 14 C -0.542 4.542 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.139 4.139 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.151 4.151 26 C -0.108 4.108 27 C -0.109 4.109 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.418 0.582 34 H 0.419 0.581 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H -0.003 1.003 40 H -0.004 1.004 41 H 0.263 0.737 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.064 0.936 52 H 0.059 0.941 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 3.444 35.999 36.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.300 6.300 3 C 0.074 3.926 4 C -0.035 4.035 5 N -0.335 5.335 6 C 0.295 3.705 7 O -0.416 6.416 8 C 0.281 3.719 9 O -0.426 6.426 10 N -0.338 5.338 11 C 0.004 3.996 12 C -0.143 4.143 13 C -0.014 4.014 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.177 4.177 23 C -0.142 4.142 24 C -0.109 4.109 25 C -0.208 4.208 26 C -0.146 4.146 27 C -0.147 4.147 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.256 0.744 34 H 0.257 0.743 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.078 0.922 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.243 3.169 35.879 36.020 hybrid contribution -0.327 0.195 -1.279 1.334 sum -0.570 3.364 34.601 34.769 Atomic orbital electron populations 1.22915 0.80724 1.03608 1.00465 1.87995 1.20305 1.26917 1.94824 1.21765 0.94465 0.83463 0.92870 1.22308 1.01727 0.97192 0.82227 1.45657 1.60195 1.23318 1.04334 1.19920 0.79820 0.85570 0.85216 1.90755 1.42633 1.20658 1.87603 1.20340 0.80021 0.85887 0.85664 1.90758 1.42965 1.21120 1.87736 1.45874 1.59788 1.23316 1.04820 1.21481 1.00577 0.95902 0.81641 1.21638 1.01385 0.98655 0.92667 1.18946 0.95381 0.95106 0.91951 1.21711 1.39654 1.04622 0.91976 0.91750 1.25987 0.95183 0.96391 1.02420 1.70110 1.44408 1.20654 1.22141 0.85383 0.77957 0.78961 0.78634 1.18446 1.20532 1.20547 1.22076 1.02065 1.00213 0.93374 1.21415 0.95104 1.00327 0.97328 1.21090 0.95545 0.96849 0.97430 1.21949 1.00511 0.96254 1.02132 1.21452 1.00394 0.98959 0.93747 1.21628 0.91572 1.02187 0.99297 0.88959 0.92130 0.94600 0.90292 0.89215 0.74357 0.74321 0.91734 0.91784 0.91448 0.91409 0.98507 0.98520 0.92805 0.89322 0.90583 0.90928 0.92144 0.91062 0.92099 0.92266 0.92819 0.92158 0.91690 0.92187 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.13 113.37 1.15 1.37 16 2 O -0.38 -5.61 8.65 -148.98 -1.29 -6.90 16 3 C 0.11 1.38 0.36 -10.79 0.00 1.37 16 4 C 0.09 1.31 4.06 86.38 0.35 1.66 16 5 N -0.68 -13.46 5.08 -464.41 -2.36 -15.82 16 6 C 0.51 13.04 7.89 87.27 0.69 13.73 16 7 O -0.54 -15.27 16.47 -3.22 -0.05 -15.32 16 8 C 0.50 14.81 7.89 87.27 0.69 15.50 16 9 O -0.55 -18.76 16.48 -3.22 -0.05 -18.81 16 10 N -0.69 -20.16 5.55 -464.43 -2.58 -22.74 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 C -0.11 -4.07 5.27 30.59 0.16 -3.91 16 13 C 0.02 1.23 4.97 29.85 0.15 1.37 16 14 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 17 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 18 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 C -0.14 -1.20 4.21 30.59 0.13 -1.07 16 23 C -0.10 -0.90 5.30 30.59 0.16 -0.74 16 24 C -0.09 -0.83 3.20 -10.79 -0.03 -0.87 16 25 C -0.15 -1.20 8.50 71.98 0.61 -0.59 16 26 C -0.11 -1.26 5.31 30.60 0.16 -1.10 16 27 C -0.11 -1.36 4.51 30.60 0.14 -1.22 16 28 H 0.09 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.52 6.32 -2.39 -0.02 0.51 16 30 H 0.04 0.48 6.64 -2.38 -0.02 0.47 16 31 H 0.08 1.16 6.63 -2.39 -0.02 1.15 16 32 H 0.09 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.42 8.37 6.80 -92.71 -0.63 7.74 16 34 H 0.42 11.00 7.95 -92.70 -0.74 10.26 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.26 14.98 8.31 -92.70 -0.77 14.20 16 42 H 0.09 0.63 6.43 -2.39 -0.02 0.62 16 43 H 0.08 0.57 6.53 -2.39 -0.02 0.55 16 44 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.65 7.68 -2.39 -0.02 0.63 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.47 4.81 -2.39 -0.01 0.46 16 48 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.06 0.86 7.68 -2.39 -0.02 0.84 16 51 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 52 H 0.06 0.90 7.01 -2.39 -0.02 0.88 16 53 H 0.09 0.96 6.43 -2.39 -0.02 0.94 16 Total: -1.00 -67.71 411.00 1.07 -66.65 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.45 Total: 22.54 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.54 Total: 0.72 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.65 Total: -94.84 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.40 Total: -41.03 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.71 1.07 -66.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343333276.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.706 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds