Wall clock time and date at job start Sat Apr 11 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99649 * 2 1 4 4 O 1.20820 * 120.00149 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99641 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.47350 * 299.99940 * 5 3 2 7 7 C 1.53001 * 109.47178 * 59.99948 * 5 3 2 8 8 C 1.53005 * 109.47006 * 179.97438 * 7 5 3 9 9 C 1.52999 * 109.47301 * 299.99998 * 8 7 5 10 10 C 1.53001 * 109.47089 * 60.00052 * 9 8 7 11 11 C 1.52999 * 109.47034 * 179.97438 * 5 3 2 12 12 C 1.53001 * 109.47194 * 299.99975 * 11 5 3 13 13 N 1.46904 * 109.47261 * 60.00025 * 11 5 3 14 14 C 1.46895 * 111.00263 * 179.97438 * 13 11 5 15 15 C 1.52997 * 109.47073 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.47110 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99671 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00183 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99980 * 0.02562 * 18 16 15 20 20 C 1.46502 * 120.00371 * 179.97438 * 18 16 15 21 21 C 1.50706 * 109.46622 * 90.00490 * 20 18 16 22 22 H 1.08005 * 120.00138 * 0.02562 * 21 20 18 23 23 C 1.37871 * 119.99722 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00073 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47399 * 119.99815 * 25 23 21 28 28 H 1.48498 * 109.47295 * 240.00422 * 25 23 21 29 29 H 1.09006 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47531 * 299.99954 * 1 2 3 31 31 H 1.09004 * 109.47190 * 60.00288 * 1 2 3 32 32 H 1.08999 * 109.47202 * 299.99988 * 7 5 3 33 33 H 1.08999 * 109.47215 * 59.99890 * 7 5 3 34 34 H 1.08999 * 109.47043 * 60.00005 * 8 7 5 35 35 H 1.08999 * 109.46455 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47356 * 180.02562 * 9 8 7 37 37 H 1.09008 * 109.47094 * 300.00256 * 9 8 7 38 38 H 1.08999 * 109.47202 * 179.97438 * 10 9 8 39 39 H 1.08999 * 109.47215 * 60.00017 * 10 9 8 40 40 H 1.08999 * 109.47071 * 179.97438 * 12 11 5 41 41 H 1.08997 * 109.46884 * 299.99935 * 12 11 5 42 42 H 1.09000 * 109.46701 * 59.99928 * 12 11 5 43 43 H 1.00900 * 110.99654 * 303.96265 * 13 11 5 44 44 H 1.08999 * 109.46939 * 60.00180 * 14 13 11 45 45 H 1.08997 * 109.47492 * 300.00247 * 14 13 11 46 46 H 1.08999 * 109.47026 * 60.00313 * 15 14 13 47 47 H 1.08998 * 109.47453 * 299.99738 * 15 14 13 48 48 H 1.09005 * 109.46533 * 269.99156 * 19 18 16 49 49 H 1.08999 * 109.46897 * 29.99012 * 19 18 16 50 50 H 1.08997 * 109.47352 * 149.99821 * 19 18 16 51 51 H 1.08996 * 109.47065 * 330.01172 * 20 18 16 52 52 H 1.08994 * 109.47523 * 210.00648 * 20 18 16 53 53 H 0.97000 * 119.99651 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9557 0.7810 0.8909 7 6 4.1138 0.5811 -1.2483 8 6 5.6417 0.6618 -1.2480 9 6 6.0750 2.1291 -1.2484 10 6 5.5274 2.8230 0.0004 11 6 4.0000 2.7422 -0.0002 12 6 3.4535 3.4349 -1.2501 13 7 3.4743 3.4089 1.1986 14 6 3.8723 4.8225 1.2321 15 6 3.3069 5.4818 2.4917 16 6 3.7158 6.9319 2.5264 17 8 4.3923 7.3927 1.6316 18 7 3.3287 7.7168 3.5513 19 6 2.5110 7.1602 4.6320 20 6 3.7266 9.1263 3.5854 21 6 2.6847 9.9594 2.8843 22 1 1.8131 9.4863 2.4565 23 6 2.8442 11.3256 2.7890 24 7 3.9057 11.9017 3.3094 25 14 1.5531 12.3582 1.9193 26 1 0.4650 11.4767 1.4249 27 1 0.9914 13.3517 2.8695 28 1 2.1760 13.0670 0.7727 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8048 -0.4642 -1.2482 33 1 3.7244 1.0750 -2.1385 34 1 6.0314 0.1681 -0.3577 35 1 6.0317 0.1671 -2.1375 36 1 7.1635 2.1866 -1.2487 37 1 5.6852 2.6228 -2.1387 38 1 5.8365 3.8682 0.0004 39 1 5.9171 2.3293 0.8907 40 1 3.7621 4.4803 -1.2504 41 1 3.8436 2.9402 -2.1396 42 1 2.3650 3.3778 -1.2505 43 1 2.4713 3.3137 1.2547 44 1 3.4823 5.3307 0.3502 45 1 4.9599 4.8937 1.2413 46 1 3.6964 4.9736 3.3738 47 1 2.2193 5.4107 2.4821 48 1 1.4556 7.2747 4.3848 49 1 2.7427 6.1023 4.7550 50 1 2.7262 7.6897 5.5601 51 1 4.6860 9.2453 3.0819 52 1 3.8169 9.4535 4.6211 53 1 4.5767 11.3653 3.7600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343614937.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:34 Heat of formation + Delta-G solvation = -155.435370 kcal Electronic energy + Delta-G solvation = -31286.664796 eV Core-core repulsion = 27156.962354 eV Total energy + Delta-G solvation = -4129.702442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.28552 -40.83154 -40.03365 -37.52193 -36.94965 -36.32572 -34.99965 -32.87112 -32.41181 -30.09641 -28.94807 -28.85338 -27.87025 -27.23995 -25.46327 -24.70314 -23.81787 -22.10885 -21.84823 -20.22220 -19.59208 -19.09084 -18.60044 -18.05474 -17.72516 -17.44481 -17.18233 -16.78475 -16.56428 -15.94357 -15.71071 -15.61311 -15.32900 -15.06402 -14.98964 -14.57511 -14.22219 -14.08127 -14.06136 -13.83852 -13.68262 -13.62025 -13.49024 -13.30386 -13.11610 -12.98392 -12.94287 -12.67597 -12.54526 -12.38431 -12.29832 -12.16470 -12.05617 -12.00606 -11.86816 -11.71528 -11.29213 -11.23321 -11.13944 -10.83072 -10.73627 -10.65037 -9.51657 -9.45242 -8.73623 -6.49269 1.12361 1.45304 1.56030 1.70501 1.73191 1.73392 2.20231 2.49626 3.02775 3.06462 3.38709 3.70023 3.71845 3.91091 3.94402 4.03612 4.10038 4.19603 4.22747 4.28186 4.29766 4.31314 4.34381 4.37838 4.42712 4.53820 4.59341 4.60895 4.68393 4.72108 4.74180 4.82861 4.85668 4.87277 4.91195 4.92701 4.97550 5.06746 5.13226 5.17569 5.26153 5.29797 5.36149 5.42784 5.51429 5.56460 5.78127 5.96555 6.09873 6.38913 6.41320 6.62693 6.72748 7.24050 7.36761 8.61361 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.002447 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.543833 B =11438.665511 C =12062.800797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.530 6.530 5 C -0.062 4.062 6 H 0.131 0.869 7 C -0.108 4.108 8 C -0.110 4.110 9 C -0.123 4.123 10 C -0.107 4.107 11 C 0.132 3.868 12 C -0.194 4.194 13 N -0.677 5.677 14 C 0.084 3.916 15 C -0.118 4.118 16 C 0.496 3.504 17 O -0.599 6.599 18 N -0.608 5.608 19 C 0.081 3.919 20 C 0.244 3.756 21 C -0.617 4.617 22 H 0.041 0.959 23 C -0.032 4.032 24 N -0.931 5.931 25 Si 1.124 2.876 26 H -0.277 1.277 27 H -0.266 1.266 28 H -0.281 1.281 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.348 0.652 44 H 0.015 0.985 45 H 0.071 0.929 46 H 0.125 0.875 47 H 0.100 0.900 48 H 0.055 0.945 49 H 0.103 0.897 50 H 0.071 0.929 51 H -0.007 1.007 52 H 0.021 0.979 53 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 -32.567 -6.085 33.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.420 6.420 5 C -0.081 4.081 6 H 0.148 0.852 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.161 4.161 10 C -0.144 4.144 11 C 0.040 3.960 12 C -0.253 4.253 13 N -0.311 5.311 14 C -0.046 4.046 15 C -0.158 4.158 16 C 0.285 3.715 17 O -0.480 6.480 18 N -0.339 5.339 19 C -0.061 4.061 20 C 0.122 3.878 21 C -0.656 4.656 22 H 0.059 0.941 23 C -0.230 4.230 24 N -0.568 5.568 25 Si 0.945 3.055 26 H -0.202 1.202 27 H -0.191 1.191 28 H -0.206 1.206 29 H 0.149 0.851 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.170 0.830 44 H 0.033 0.967 45 H 0.089 0.911 46 H 0.143 0.857 47 H 0.119 0.881 48 H 0.073 0.927 49 H 0.121 0.879 50 H 0.090 0.910 51 H 0.011 0.989 52 H 0.039 0.961 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.578 -30.729 -6.513 31.518 hybrid contribution -0.352 -0.230 -0.099 0.432 sum -2.930 -30.959 -6.612 31.793 Atomic orbital electron populations 1.23524 0.75092 1.05603 1.02351 1.86502 1.24654 1.32657 1.83495 1.24185 0.92569 0.81180 0.70764 1.90557 1.67921 1.36957 1.46582 1.21214 0.85834 0.97011 1.04029 0.85167 1.21617 0.97108 1.01317 0.94555 1.21517 0.93633 0.95758 1.03847 1.21643 1.01139 0.96352 0.96973 1.21607 0.92099 1.00780 0.99949 1.20700 0.95653 0.91369 0.88240 1.22830 1.02307 1.00452 0.99672 1.60829 1.18964 1.12245 1.39092 1.21467 1.00456 0.87739 0.94928 1.21527 1.03154 0.89277 1.01798 1.21362 0.79454 0.89734 0.80925 1.90624 1.41750 1.77201 1.38470 1.48043 1.51810 1.10559 1.23534 1.21939 0.94764 1.00255 0.89178 1.18918 0.94670 0.78626 0.95611 1.22571 1.08087 0.95002 1.39922 0.94068 1.27386 1.01480 0.97639 0.96510 1.70865 1.10414 1.39308 1.36168 0.82853 0.72630 0.74306 0.75732 1.20236 1.19112 1.20648 0.85077 0.92117 0.92306 0.88700 0.91665 0.90268 0.89723 0.90657 0.92188 0.93251 0.90161 0.94263 0.90374 0.91893 0.82971 0.96714 0.91068 0.85729 0.88126 0.92685 0.87854 0.90978 0.98887 0.96086 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.54 10.47 -51.47 -0.54 -6.08 16 3 C 0.47 8.82 6.71 71.24 0.48 9.30 16 4 O -0.53 -13.08 11.32 21.98 0.25 -12.83 16 5 C -0.06 -0.95 2.13 -11.54 -0.02 -0.98 16 6 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 7 C -0.11 -1.20 4.86 30.60 0.15 -1.05 16 8 C -0.11 -1.03 5.92 30.60 0.18 -0.85 16 9 C -0.12 -1.71 5.65 30.59 0.17 -1.54 16 10 C -0.11 -2.03 4.49 30.58 0.14 -1.89 16 11 C 0.13 2.72 0.43 3.51 0.00 2.72 16 12 C -0.19 -4.65 7.22 71.98 0.52 -4.13 16 13 N -0.68 -16.54 6.07 -470.26 -2.85 -19.39 16 14 C 0.08 2.59 4.19 86.30 0.36 2.95 16 15 C -0.12 -3.62 4.51 29.85 0.13 -3.48 16 16 C 0.50 21.94 7.67 87.66 0.67 22.61 16 17 O -0.60 -32.68 15.56 -3.03 -0.05 -32.72 16 18 N -0.61 -27.30 2.86 -851.12 -2.43 -29.73 16 19 C 0.08 2.55 10.29 127.77 1.31 3.87 16 20 C 0.24 13.64 4.52 85.63 0.39 14.03 16 21 C -0.62 -37.51 9.39 25.60 0.24 -37.26 16 22 H 0.04 2.53 7.81 -2.91 -0.02 2.50 16 23 C -0.03 -1.93 5.46 84.65 0.46 -1.47 16 24 N -0.93 -59.34 13.65 21.45 0.29 -59.05 16 25 Si 1.12 53.19 29.90 68.60 2.05 55.24 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 29 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.75 8.13 -2.38 -0.02 0.73 16 31 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 32 H 0.09 0.78 8.11 -2.39 -0.02 0.76 16 33 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.92 6.43 -2.38 -0.02 0.90 16 38 H 0.05 1.19 6.40 -2.39 -0.02 1.18 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.13 6.40 -2.39 -0.02 1.11 16 41 H 0.08 1.54 4.80 -2.39 -0.01 1.53 16 42 H 0.06 1.70 5.52 -2.39 -0.01 1.69 16 43 H 0.35 8.99 6.00 -89.69 -0.54 8.46 16 44 H 0.01 0.54 6.26 -2.39 -0.01 0.52 16 45 H 0.07 2.34 6.26 -2.39 -0.01 2.33 16 46 H 0.12 3.07 7.40 -2.39 -0.02 3.05 16 47 H 0.10 2.81 8.11 -2.39 -0.02 2.79 16 48 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.10 2.35 6.44 -2.39 -0.02 2.34 16 50 H 0.07 2.19 7.89 -2.39 -0.02 2.17 16 51 H -0.01 -0.44 7.29 -2.39 -0.02 -0.45 16 52 H 0.02 1.17 7.76 -2.39 -0.02 1.15 16 53 H 0.26 16.49 7.22 -92.71 -0.67 15.82 16 Total: -1.00 -81.27 400.93 3.58 -77.70 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.47 Total: 22.54 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 6.38 Total: 4.32 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.99 Total: -108.16 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.34 Total: -51.64 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 2.05 Total: 55.24 kcal Total: -81.27 3.58 -77.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343614937.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.738 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds