Wall clock time and date at job start Sat Apr 11 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48503 * 109.47143 * 90.00652 * 3 2 1 5 5 H 1.48503 * 109.46931 * 210.00346 * 3 2 1 6 6 H 1.48499 * 109.47345 * 330.00538 * 3 2 1 7 7 C 1.38807 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00042 * 323.76382 * 7 2 1 9 9 N 1.36944 * 119.99643 * 143.75826 * 7 2 1 10 10 C 1.46919 * 120.63155 * 332.18975 * 9 7 2 11 11 C 1.53194 * 108.77599 * 233.58594 * 10 9 7 12 12 C 1.53039 * 109.30955 * 305.36645 * 11 10 9 13 13 C 1.53036 * 109.54094 * 61.36698 * 12 11 10 14 14 H 1.09007 * 109.49431 * 58.58343 * 13 12 11 15 15 C 1.52997 * 109.50091 * 178.68055 * 13 12 11 16 16 N 1.46500 * 109.47037 * 185.00261 * 15 13 12 17 17 C 1.34779 * 120.00011 * 180.02562 * 16 15 13 18 18 O 1.21288 * 119.99625 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00454 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47480 * 179.97438 * 19 17 16 21 21 O 1.42898 * 109.46922 * 179.97438 * 20 19 17 22 22 C 1.42904 * 113.99660 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47225 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.82130 * 305.56669 * 23 22 21 25 25 C 1.54379 * 109.83363 * 184.58926 * 23 22 21 26 26 C 1.55309 * 102.25107 * 219.13133 * 25 23 22 27 27 C 1.54945 * 100.94497 * 34.13143 * 26 25 23 28 28 O 1.43240 * 109.82973 * 66.44860 * 23 22 21 29 29 C 1.46922 * 120.62425 * 151.91294 * 9 7 2 30 30 H 0.97001 * 119.99834 * 174.93450 * 1 2 3 31 31 H 1.08997 * 109.58830 * 353.37335 * 10 9 7 32 32 H 1.08999 * 109.58590 * 113.65511 * 10 9 7 33 33 H 1.09001 * 109.49839 * 65.31693 * 11 10 9 34 34 H 1.09004 * 109.49680 * 185.38452 * 11 10 9 35 35 H 1.09004 * 109.46004 * 181.38655 * 12 11 10 36 36 H 1.08998 * 109.46615 * 301.34183 * 12 11 10 37 37 H 1.09000 * 109.47058 * 304.99885 * 15 13 12 38 38 H 1.08993 * 109.47567 * 64.99859 * 15 13 12 39 39 H 0.97001 * 120.00163 * 359.97438 * 16 15 13 40 40 H 1.09000 * 109.46777 * 299.99805 * 19 17 16 41 41 H 1.09002 * 109.46900 * 59.99441 * 19 17 16 42 42 H 1.09000 * 109.47058 * 299.99757 * 20 19 17 43 43 H 1.09001 * 109.46957 * 59.99604 * 20 19 17 44 44 H 1.08996 * 109.46976 * 299.99814 * 22 21 20 45 45 H 1.09003 * 109.47375 * 60.00108 * 22 21 20 46 46 H 1.08999 * 110.84419 * 337.31387 * 25 23 22 47 47 H 1.08997 * 110.85182 * 100.93949 * 25 23 22 48 48 H 1.09003 * 111.12429 * 276.20905 * 26 25 23 49 49 H 1.09002 * 111.12466 * 152.05186 * 26 25 23 50 50 H 1.09000 * 110.31097 * 204.64719 * 27 26 25 51 51 H 1.08994 * 110.31369 * 82.46699 * 27 26 25 52 52 H 1.09003 * 109.58685 * 246.19831 * 29 9 7 53 53 H 1.09001 * 109.59235 * 6.62704 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.6270 -2.0472 0.5520 9 7 3.1810 -1.3164 -0.7017 10 6 3.4252 -0.4887 -1.8908 11 6 3.7950 -1.4048 -3.0617 12 6 4.9766 -2.2898 -2.6583 13 6 4.5778 -3.1648 -1.4678 14 1 3.7162 -3.7756 -1.7377 15 6 5.7488 -4.0725 -1.0862 16 7 5.3284 -4.9921 -0.0260 17 6 6.2011 -5.8902 0.4722 18 8 7.3343 -5.9374 0.0424 19 6 5.7690 -6.8359 1.5631 20 6 6.9399 -7.7437 1.9446 21 8 6.5302 -8.6399 2.9795 22 6 7.5559 -9.5361 3.4119 23 6 7.0085 -10.4431 4.5158 24 1 6.5885 -9.8365 5.3182 25 6 8.1399 -11.3360 5.0691 26 6 7.4139 -12.6919 5.2850 27 6 6.4073 -12.6774 4.1072 28 8 5.9988 -11.3061 3.9796 29 6 4.2192 -2.2647 -0.2756 30 1 -0.4850 -0.8368 -0.0742 31 1 2.5239 0.0727 -2.1367 32 1 4.2439 0.2030 -1.6927 33 1 2.9409 -2.0322 -3.3166 34 1 4.0716 -0.7988 -3.9245 35 1 5.2576 -2.9254 -3.4981 36 1 5.8226 -1.6614 -2.3799 37 1 6.0647 -4.6442 -1.9588 38 1 6.5797 -3.4635 -0.7305 39 1 4.4222 -4.9541 0.3179 40 1 5.4530 -6.2639 2.4355 41 1 4.9381 -7.4452 1.2076 42 1 7.2556 -8.3156 1.0721 43 1 7.7711 -7.1345 2.2999 44 1 7.8844 -10.1456 2.5701 45 1 8.3997 -8.9639 3.7974 46 1 8.9444 -11.4385 4.3408 47 1 8.5174 -10.9434 6.0132 48 1 6.8962 -12.7119 6.2441 49 1 8.1083 -13.5275 5.1981 50 1 5.5482 -13.3082 4.3359 51 1 6.8920 -13.0145 3.1910 52 1 5.1030 -1.7166 0.0507 53 1 3.8419 -2.8754 0.5446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359381882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:56 Heat of formation + Delta-G solvation = -145.993077 kcal Electronic energy + Delta-G solvation = -29324.780197 eV Core-core repulsion = 25195.487204 eV Total energy + Delta-G solvation = -4129.292994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.98878 -40.53258 -39.52393 -38.56039 -36.33905 -34.79976 -33.42465 -33.05971 -32.65133 -32.00851 -30.98992 -27.42288 -26.79687 -26.29305 -24.49642 -23.44609 -22.72888 -22.62380 -22.11789 -21.43055 -20.70569 -19.29724 -18.48168 -18.09825 -17.24424 -17.19586 -17.04195 -16.83826 -16.60055 -16.32335 -15.91839 -15.82836 -15.53128 -15.33311 -14.87277 -14.76681 -14.61013 -14.44273 -14.01049 -13.88174 -13.72850 -13.60192 -13.53762 -13.42452 -12.96288 -12.68209 -12.44249 -12.34776 -12.32221 -12.21567 -12.14587 -12.07104 -11.77190 -11.72449 -11.70904 -11.46758 -11.25030 -11.14733 -10.94044 -10.66825 -10.49903 -10.38503 -10.10633 -8.98779 -8.55192 -5.40420 1.52813 1.56053 1.56906 1.76048 1.97068 2.60848 2.71701 2.95566 2.97220 3.43890 3.54570 3.71848 3.80214 3.88829 3.93854 3.95242 4.00694 4.02065 4.14407 4.16003 4.27613 4.30326 4.37875 4.44255 4.45414 4.50915 4.54627 4.61824 4.69629 4.76721 4.78593 4.79559 4.82087 4.83959 4.88976 4.89339 4.93698 5.02749 5.04372 5.12412 5.20189 5.23896 5.26959 5.31075 5.43871 5.59483 5.86818 6.02483 6.20967 6.30041 6.47177 6.93310 7.14828 7.66660 8.17372 8.81514 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.001689 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.968572 B =16570.812216 C =17467.683768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.048 4.048 3 Si 1.059 2.941 4 H -0.299 1.299 5 H -0.237 1.237 6 H -0.300 1.300 7 C -0.348 4.348 8 H 0.032 0.968 9 N -0.613 5.613 10 C 0.133 3.867 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.103 4.103 14 H 0.066 0.934 15 C 0.136 3.864 16 N -0.720 5.720 17 C 0.520 3.480 18 O -0.583 6.583 19 C -0.135 4.135 20 C 0.083 3.917 21 O -0.400 6.400 22 C 0.049 3.951 23 C 0.076 3.924 24 H 0.082 0.918 25 C -0.143 4.143 26 C -0.150 4.150 27 C 0.035 3.965 28 O -0.402 6.402 29 C 0.149 3.851 30 H 0.253 0.747 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.411 0.589 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.063 0.937 52 H 0.027 0.973 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.555 -23.214 5.491 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.247 4.247 3 Si 0.885 3.115 4 H -0.227 1.227 5 H -0.161 1.161 6 H -0.227 1.227 7 C -0.477 4.477 8 H 0.050 0.950 9 N -0.338 5.338 10 C 0.008 3.992 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.124 4.124 14 H 0.085 0.915 15 C 0.012 3.988 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.464 6.464 19 C -0.174 4.174 20 C 0.006 3.994 21 O -0.319 6.319 22 C -0.028 4.028 23 C 0.018 3.982 24 H 0.100 0.900 25 C -0.181 4.181 26 C -0.187 4.187 27 C -0.041 4.041 28 O -0.322 6.322 29 C 0.023 3.977 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.247 0.753 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.121 0.879 48 H 0.101 0.899 49 H 0.122 0.878 50 H 0.109 0.891 51 H 0.081 0.919 52 H 0.045 0.955 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.782 -21.552 5.239 29.720 hybrid contribution -0.667 -1.511 0.256 1.671 sum 19.115 -23.063 5.495 30.455 Atomic orbital electron populations 1.71003 1.08172 1.28948 1.49531 1.27119 0.95876 1.04027 0.97638 0.84079 0.76884 0.73595 0.76983 1.22711 1.16102 1.22718 1.19906 0.99353 0.96747 1.31664 0.94982 1.44428 1.16352 1.45439 1.27571 1.21472 0.98101 0.92998 0.86596 1.21960 0.98198 0.98741 0.98008 1.21351 0.97556 0.97717 0.96922 1.21805 0.96987 0.96307 0.97275 0.91536 1.21302 0.96599 0.90729 0.90143 1.46065 1.15892 1.35653 1.39508 1.20702 0.84675 0.80901 0.82996 1.90678 1.21072 1.72156 1.62509 1.21439 1.00402 0.97386 0.98218 1.22028 0.95982 0.91182 0.90198 1.87847 1.38787 1.49750 1.55555 1.23118 0.90624 0.91584 0.97445 1.22912 0.89396 0.91578 0.94283 0.89998 1.23135 0.97200 0.94586 1.03176 1.23275 0.98369 0.98097 0.98950 1.23631 0.99058 0.82990 0.98398 1.88521 1.43456 1.17107 1.83160 1.21193 0.90645 0.91070 0.94766 0.93809 0.94255 0.94348 0.93530 0.89950 0.90191 0.91298 0.91063 0.91763 0.75276 0.86664 0.86747 0.93191 0.92710 0.92849 0.90556 0.89246 0.87913 0.89852 0.87758 0.89100 0.91875 0.95464 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.70 21.65 0.30 -58.18 16 2 C -0.05 -2.79 4.81 84.86 0.41 -2.39 16 3 Si 1.06 50.82 27.00 68.60 1.85 52.68 16 4 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.24 -9.99 4.73 99.48 0.47 -9.52 16 6 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.35 -19.24 9.70 84.03 0.82 -18.43 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 N -0.61 -27.90 2.71 -698.27 -1.89 -29.79 16 10 C 0.13 5.43 4.37 86.36 0.38 5.81 16 11 C -0.13 -4.13 6.08 30.67 0.19 -3.95 16 12 C -0.10 -2.59 5.16 30.62 0.16 -2.43 16 13 C -0.10 -2.97 2.38 -10.57 -0.03 -3.00 16 14 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 15 C 0.14 3.44 5.07 86.38 0.44 3.87 16 16 N -0.72 -17.26 5.33 -463.06 -2.47 -19.73 16 17 C 0.52 13.10 7.83 87.66 0.69 13.78 16 18 O -0.58 -18.54 15.98 -3.05 -0.05 -18.59 16 19 C -0.13 -2.72 6.07 29.85 0.18 -2.54 16 20 C 0.08 1.79 5.23 71.98 0.38 2.16 16 21 O -0.40 -9.09 10.33 -146.52 -1.51 -10.60 16 22 C 0.05 0.83 5.47 71.98 0.39 1.23 16 23 C 0.08 1.19 3.81 31.06 0.12 1.31 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 25 C -0.14 -1.19 6.54 31.86 0.21 -0.99 16 26 C -0.15 -1.12 7.16 32.05 0.23 -0.89 16 27 C 0.04 0.44 7.78 72.65 0.57 1.01 16 28 O -0.40 -8.30 11.00 -146.52 -1.61 -9.91 16 29 C 0.15 5.42 5.63 86.51 0.49 5.90 16 30 H 0.25 15.88 8.73 -92.71 -0.81 15.07 16 31 H 0.04 1.79 5.82 -2.39 -0.01 1.78 16 32 H 0.04 1.50 6.59 -2.39 -0.02 1.49 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 9.03 7.72 -92.71 -0.72 8.32 16 40 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 43 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 0.59 7.85 -2.39 -0.02 0.57 16 47 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.05 1.85 7.16 -2.39 -0.02 1.83 16 Total: -1.00 -73.58 412.77 0.10 -73.48 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.12 Total: 20.17 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.60 Total: 0.48 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.06 Total: -107.71 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -3.17 Total: -39.10 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 1.85 Total: 52.68 kcal Total: -73.58 0.10 -73.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.512 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds