Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47122 * 240.00105 * 3 2 1 5 5 H 1.48502 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47366 * 119.99843 * 3 2 1 7 7 C 1.38818 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 163.08810 * 7 2 1 9 9 N 1.36933 * 119.99820 * 343.08807 * 7 2 1 10 10 C 1.46925 * 120.63318 * 331.80874 * 9 7 2 11 11 C 1.53197 * 108.77711 * 233.62817 * 10 9 7 12 12 C 1.53036 * 109.31248 * 305.36721 * 11 10 9 13 13 C 1.53042 * 109.54069 * 61.35972 * 12 11 10 14 14 H 1.09006 * 109.52514 * 58.60478 * 13 12 11 15 15 C 1.53001 * 109.49913 * 178.68138 * 13 12 11 16 16 N 1.46503 * 109.47101 * 184.83928 * 15 13 12 17 17 C 1.34777 * 119.99797 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00106 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47676 * 179.97438 * 19 17 16 21 21 O 1.42892 * 109.47599 * 180.02562 * 20 19 17 22 22 C 1.42903 * 114.00328 * 180.02562 * 21 20 19 23 23 C 1.52994 * 109.47254 * 179.97438 * 22 21 20 24 24 H 1.09007 * 110.33472 * 52.74970 * 23 22 21 25 25 C 1.54475 * 110.37258 * 174.99748 * 23 22 21 26 26 C 1.54514 * 104.06355 * 142.81094 * 25 23 22 27 27 C 1.54480 * 104.18331 * 359.93655 * 26 25 23 28 28 O 1.44432 * 110.37513 * 290.38162 * 23 22 21 29 29 C 1.46928 * 120.62872 * 151.82543 * 9 7 2 30 30 H 0.96999 * 119.99777 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58493 * 353.41395 * 10 9 7 32 32 H 1.09003 * 109.58669 * 113.70189 * 10 9 7 33 33 H 1.09006 * 109.49581 * 65.31205 * 11 10 9 34 34 H 1.08994 * 109.49911 * 185.37573 * 11 10 9 35 35 H 1.08999 * 109.46034 * 301.34120 * 12 11 10 36 36 H 1.09004 * 109.46238 * 181.38356 * 12 11 10 37 37 H 1.08999 * 109.46593 * 64.84184 * 15 13 12 38 38 H 1.09000 * 109.47554 * 304.84212 * 15 13 12 39 39 H 0.96999 * 120.00081 * 359.97438 * 16 15 13 40 40 H 1.09008 * 109.46801 * 59.99627 * 19 17 16 41 41 H 1.09000 * 109.47042 * 300.00312 * 19 17 16 42 42 H 1.09001 * 109.46867 * 59.99723 * 20 19 17 43 43 H 1.09005 * 109.46835 * 300.00311 * 20 19 17 44 44 H 1.09001 * 109.46649 * 59.99484 * 22 21 20 45 45 H 1.08995 * 109.46885 * 299.99971 * 22 21 20 46 46 H 1.09004 * 110.51280 * 24.17092 * 25 23 22 47 47 H 1.08997 * 110.63297 * 261.51640 * 25 23 22 48 48 H 1.09003 * 110.50710 * 118.64536 * 26 25 23 49 49 H 1.08999 * 110.51279 * 241.21655 * 26 25 23 50 50 H 1.08991 * 110.37509 * 94.92044 * 27 26 25 51 51 H 1.09003 * 110.37015 * 217.25727 * 27 26 25 52 52 H 1.08994 * 109.58568 * 6.59028 * 29 9 7 53 53 H 1.08994 * 109.71090 * 246.22557 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2726 9 7 1.3700 -2.3626 0.3439 10 6 0.2263 -2.3412 1.2660 11 6 0.4983 -3.3211 2.4118 12 6 0.8130 -4.7022 1.8326 13 6 2.0681 -4.6178 0.9609 14 1 2.9036 -4.2545 1.5594 15 6 2.4008 -6.0055 0.4090 16 7 3.6647 -5.9472 -0.3296 17 6 4.1589 -7.0595 -0.9083 18 8 3.5571 -8.1087 -0.8180 19 6 5.4587 -6.9995 -1.6685 20 6 5.7915 -8.3871 -2.2204 21 8 7.0242 -8.3302 -2.9407 22 6 7.4284 -9.5812 -3.5009 23 6 8.7528 -9.4025 -4.2456 24 1 9.4918 -8.9323 -3.5967 25 6 9.2727 -10.7657 -4.7530 26 6 9.9003 -10.4405 -6.1270 27 6 9.6854 -8.9195 -6.2907 28 8 8.5558 -8.6148 -5.4401 29 6 1.8139 -3.6527 -0.2013 30 1 -0.4850 0.8401 -0.0004 31 1 0.0993 -1.3358 1.6674 32 1 -0.6774 -2.6393 0.7343 33 1 1.3482 -2.9697 2.9969 34 1 -0.3818 -3.3861 3.0515 35 1 -0.0272 -5.0423 1.2274 36 1 0.9829 -5.4072 2.6465 37 1 1.6039 -6.3311 -0.2596 38 1 2.4942 -6.7119 1.2339 39 1 4.1454 -5.1079 -0.4027 40 1 6.2558 -6.6739 -1.0001 41 1 5.3649 -6.2929 -2.4932 42 1 4.9944 -8.7130 -2.8886 43 1 5.8854 -9.0932 -1.3953 44 1 6.6653 -9.9313 -4.1962 45 1 7.5557 -10.3125 -2.7028 46 1 8.4489 -11.4704 -4.8667 47 1 10.0257 -11.1664 -4.0744 48 1 10.9641 -10.6780 -6.1267 49 1 9.3883 -10.9861 -6.9196 50 1 10.5682 -8.3735 -5.9583 51 1 9.4575 -8.6781 -7.3290 52 1 2.7343 -3.5127 -0.7679 53 1 1.0420 -4.0614 -0.8533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359381884.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -148.599855 kcal Electronic energy + Delta-G solvation = -29237.228380 eV Core-core repulsion = 25107.822348 eV Total energy + Delta-G solvation = -4129.406032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.94268 -40.43070 -39.39556 -38.56229 -36.25832 -34.66951 -33.36879 -32.96259 -32.28915 -31.87947 -30.92706 -27.31676 -27.05579 -26.18337 -24.39591 -23.77245 -22.92611 -22.43851 -21.92299 -21.38504 -20.52518 -18.72034 -18.42037 -17.72997 -17.31084 -17.11378 -16.89886 -16.66780 -16.60815 -16.51530 -16.09156 -15.68345 -15.39262 -15.03027 -14.87109 -14.64115 -14.54656 -14.45915 -14.07195 -13.98898 -13.73097 -13.42353 -13.14884 -13.01133 -12.84098 -12.67734 -12.48133 -12.46422 -12.29774 -12.21342 -12.19096 -12.08556 -11.97610 -11.81375 -11.57074 -11.49062 -11.35147 -11.10213 -10.89920 -10.74545 -10.65423 -10.51635 -10.06435 -8.66454 -7.85865 -5.31778 1.48074 1.50130 1.56700 1.60579 1.99984 2.52053 2.77997 2.93181 3.28873 3.60664 3.66158 3.75965 3.82961 3.99236 4.00266 4.01319 4.05118 4.06390 4.13621 4.17903 4.34832 4.40981 4.41736 4.50660 4.51050 4.55164 4.59177 4.64196 4.77170 4.77633 4.83315 4.84140 4.89335 4.90759 4.92381 4.95780 5.02049 5.09121 5.11649 5.16328 5.24277 5.34494 5.40011 5.49433 5.58222 5.67814 5.79437 5.89743 6.15768 6.39959 6.53263 7.16067 7.20361 7.87570 8.39655 9.20213 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.001760 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.252201 B =15904.265466 C =17632.452484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.100 4.100 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.717 5.717 17 C 0.518 3.482 18 O -0.586 6.586 19 C -0.133 4.133 20 C 0.083 3.917 21 O -0.400 6.400 22 C 0.064 3.936 23 C 0.071 3.929 24 H 0.077 0.923 25 C -0.145 4.145 26 C -0.151 4.151 27 C 0.032 3.968 28 O -0.399 6.399 29 C 0.151 3.849 30 H 0.249 0.751 31 H 0.051 0.949 32 H -0.009 1.009 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.097 0.903 52 H 0.058 0.942 53 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.463 -22.303 -5.293 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.013 3.987 16 N -0.369 5.369 17 C 0.306 3.694 18 O -0.467 6.467 19 C -0.173 4.173 20 C 0.006 3.994 21 O -0.320 6.320 22 C -0.013 4.013 23 C 0.014 3.986 24 H 0.095 0.905 25 C -0.183 4.183 26 C -0.189 4.189 27 C -0.044 4.044 28 O -0.319 6.319 29 C 0.026 3.974 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.250 0.750 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.115 0.885 52 H 0.076 0.924 53 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 18.856 -22.576 -5.308 29.889 hybrid contribution -0.059 1.365 -0.214 1.383 sum 18.797 -21.211 -5.522 28.874 Atomic orbital electron populations 1.70193 1.06758 1.25817 1.55471 1.25823 0.96008 1.01599 1.01396 0.85352 0.77532 0.79235 0.78393 1.20063 1.22383 1.20281 1.19512 0.92942 0.85887 1.40846 0.91128 1.44293 1.35883 1.02276 1.50742 1.20628 0.87673 0.97750 0.89242 1.21998 1.00960 0.95955 0.97994 1.21338 0.96568 0.96751 0.98879 1.21719 0.99088 0.93482 0.97760 0.90371 1.21268 0.85177 0.96703 0.95551 1.46023 1.24591 1.12214 1.54059 1.20753 0.86993 0.83091 0.78565 1.90681 1.62458 1.31163 1.62381 1.21434 0.94886 0.99216 1.01762 1.22038 0.85580 0.96575 0.95245 1.87827 1.39805 1.32814 1.71557 1.22738 0.95598 0.86137 0.96797 1.23143 0.95933 0.92148 0.87405 0.90545 1.22939 1.01874 0.95921 0.97528 1.22945 1.02925 0.95653 0.97351 1.23663 0.89196 0.95668 0.95856 1.89236 1.45798 1.67263 1.29637 1.21032 0.97128 0.85782 0.93482 0.94237 0.93091 0.99041 0.92774 0.91290 0.92757 0.90113 0.92656 0.90852 0.75017 0.85936 0.87001 0.93559 0.92296 0.92804 0.89757 0.89948 0.88206 0.88583 0.90157 0.91552 0.88491 0.92402 0.97782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.59 11.20 21.65 0.24 -55.34 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 3 Si 0.97 44.49 29.59 68.60 2.03 46.52 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.26 -14.08 9.58 84.04 0.81 -13.28 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -29.88 2.99 -699.09 -2.09 -31.97 16 10 C 0.17 8.29 5.30 86.36 0.46 8.74 16 11 C -0.13 -4.69 6.08 30.67 0.19 -4.51 16 12 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 13 C -0.10 -3.04 2.38 -10.71 -0.03 -3.07 16 14 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 15 C 0.14 3.67 5.07 86.38 0.44 4.10 16 16 N -0.72 -17.26 5.33 -463.05 -2.47 -19.73 16 17 C 0.52 13.11 7.83 87.66 0.69 13.80 16 18 O -0.59 -19.02 15.98 -3.05 -0.05 -19.07 16 19 C -0.13 -2.60 6.07 29.85 0.18 -2.42 16 20 C 0.08 1.75 5.23 71.98 0.38 2.12 16 21 O -0.40 -8.83 10.34 -148.94 -1.54 -10.37 16 22 C 0.06 1.08 5.54 71.98 0.40 1.48 16 23 C 0.07 1.11 3.58 31.09 0.11 1.22 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 25 C -0.14 -1.32 6.63 31.61 0.21 -1.11 16 26 C -0.15 -1.25 7.08 31.61 0.22 -1.02 16 27 C 0.03 0.42 7.65 72.49 0.55 0.97 16 28 O -0.40 -8.34 11.35 -148.94 -1.69 -10.03 16 29 C 0.15 5.95 5.60 86.36 0.48 6.43 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 31 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.41 8.66 7.70 -92.71 -0.71 7.95 16 40 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 43 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 0.69 7.87 -2.38 -0.02 0.67 16 47 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.06 2.14 7.13 -2.39 -0.02 2.13 16 53 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -71.86 417.66 0.25 -71.61 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.16 Total: 20.24 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.66 Total: 8.15 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.32 Total: -107.05 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -3.28 Total: -39.47 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.86 0.25 -71.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381884.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.988 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds