Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46820 * 239.99744 * 3 2 1 5 5 H 1.48502 * 109.46818 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47097 * 119.99720 * 3 2 1 7 7 C 1.37874 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00577 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47069 * 179.97438 * 11 10 9 13 13 C 1.46847 * 111.00344 * 297.10240 * 12 11 10 14 14 C 1.53031 * 109.52476 * 174.16194 * 13 12 11 15 15 C 1.53120 * 109.27836 * 59.17587 * 14 13 12 16 16 C 1.53110 * 109.16399 * 302.34512 * 15 14 13 17 17 C 1.46850 * 111.00032 * 172.89074 * 12 11 10 18 18 H 1.09003 * 109.46243 * 65.83643 * 17 12 11 19 19 C 1.53008 * 109.46311 * 305.85859 * 17 12 11 20 20 O 1.45196 * 109.46914 * 296.58070 * 19 17 12 21 21 C 1.34632 * 117.00053 * 179.97438 * 20 19 17 22 22 O 1.21515 * 120.00328 * 0.02562 * 21 20 19 23 23 N 1.34782 * 120.00385 * 179.97438 * 21 20 19 24 24 C 1.46499 * 120.00046 * 179.97438 * 23 21 20 25 25 H 1.08994 * 110.43539 * 34.30467 * 24 23 21 26 26 C 1.54819 * 110.48465 * 156.84403 * 24 23 21 27 27 C 1.55348 * 101.92855 * 97.82517 * 26 24 23 28 28 O 1.44375 * 103.50606 * 37.05159 * 27 26 24 29 29 C 1.43748 * 106.97439 * 319.90706 * 28 27 26 30 30 H 0.97004 * 120.00221 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46733 * 59.99686 * 9 7 2 32 32 H 1.08997 * 109.46903 * 300.00192 * 9 7 2 33 33 H 1.09000 * 109.47559 * 60.00157 * 10 9 7 34 34 H 1.09006 * 109.47435 * 300.00124 * 10 9 7 35 35 H 1.09000 * 109.47111 * 60.00346 * 11 10 9 36 36 H 1.08997 * 109.47269 * 299.99815 * 11 10 9 37 37 H 1.09004 * 109.45790 * 294.17555 * 13 12 11 38 38 H 1.08994 * 109.46195 * 54.13965 * 13 12 11 39 39 H 1.09008 * 109.50266 * 299.23500 * 14 13 12 40 40 H 1.08995 * 109.50587 * 179.11833 * 14 13 12 41 41 H 1.09007 * 109.51862 * 182.44197 * 15 14 13 42 42 H 1.09005 * 109.52467 * 62.25574 * 15 14 13 43 43 H 1.09005 * 109.50794 * 297.71612 * 16 15 14 44 44 H 1.09005 * 109.54001 * 177.61388 * 16 15 14 45 45 H 1.09002 * 109.46827 * 56.57451 * 19 17 12 46 46 H 1.08991 * 109.47018 * 176.57733 * 19 17 12 47 47 H 0.97005 * 119.99557 * 0.02562 * 23 21 20 48 48 H 1.09000 * 110.90541 * 215.99313 * 26 24 23 49 49 H 1.08997 * 110.90704 * 339.60259 * 26 24 23 50 50 H 1.08999 * 110.63688 * 278.53519 * 27 26 24 51 51 H 1.08999 * 110.72081 * 155.61288 * 27 26 24 52 52 H 1.08996 * 109.88178 * 267.08762 * 29 28 27 53 53 H 1.08997 * 110.00191 * 145.99995 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.2525 -6.0977 -1.2180 14 6 4.3286 -7.1812 -1.1177 15 6 3.6570 -8.5455 -0.9375 16 6 2.7738 -8.5097 0.3127 17 6 1.7427 -7.3877 0.1709 18 1 1.1151 -7.5793 -0.6995 19 6 0.8705 -7.3352 1.4269 20 8 1.7145 -7.1602 2.5953 21 6 1.0979 -7.0934 3.7902 22 8 -0.1125 -7.1795 3.8551 23 7 1.8231 -6.9321 4.9148 24 6 1.1521 -6.8589 6.2150 25 1 0.2733 -7.5036 6.2265 26 6 2.1275 -7.2522 7.3511 27 6 2.6013 -5.8640 7.8625 28 8 1.4156 -5.0460 7.7649 29 6 0.7584 -5.4044 6.5376 30 1 -0.4851 0.8401 -0.0004 31 1 0.6247 -2.5570 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.8712 -3.6040 0.8923 34 1 2.8727 -3.6047 -0.8877 35 1 0.8546 -5.0450 -0.8895 36 1 0.8526 -5.0447 0.8905 37 1 2.6176 -6.2953 -2.0817 38 1 3.7276 -5.1234 -1.3320 39 1 4.9724 -6.9766 -0.2621 40 1 4.9253 -7.1870 -2.0297 41 1 4.4206 -9.3148 -0.8221 42 1 3.0436 -8.7678 -1.8107 43 1 3.3930 -8.3260 1.1907 44 1 2.2596 -9.4645 0.4232 45 1 0.1757 -6.4986 1.3520 46 1 0.3103 -8.2655 1.5193 47 1 2.7894 -6.8638 4.8631 48 1 1.6084 -7.8008 8.1369 49 1 2.9646 -7.8317 6.9618 50 1 3.3931 -5.4697 7.2255 51 1 2.9389 -5.9287 8.8968 52 1 1.0872 -4.7447 5.7347 53 1 -0.3224 -5.3311 6.6583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375754365.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -159.644517 kcal Electronic energy + Delta-G solvation = -30981.945745 eV Core-core repulsion = 26852.060780 eV Total energy + Delta-G solvation = -4129.884964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.77650 -40.63208 -39.96881 -37.53299 -36.37404 -35.81464 -34.74374 -33.21897 -32.30483 -31.75839 -29.76533 -28.54972 -27.57868 -25.63154 -24.19685 -23.84955 -23.29157 -22.20591 -21.94097 -21.54971 -20.60731 -19.81743 -18.53534 -18.18668 -17.74946 -17.22505 -17.09651 -16.69146 -16.46619 -16.34918 -16.08295 -15.80463 -15.46832 -15.27316 -14.94184 -14.71251 -14.46388 -14.26810 -14.04038 -13.94845 -13.78748 -13.48229 -13.24016 -13.17701 -12.81343 -12.79083 -12.68148 -12.49921 -12.38079 -12.32148 -12.19017 -12.14763 -11.81379 -11.77820 -11.64090 -11.46846 -11.43474 -11.31765 -11.01537 -10.93258 -10.78373 -10.56573 -10.37642 -9.23865 -8.21824 -6.33593 1.07508 1.37770 1.41526 1.49437 1.68669 2.39083 2.82248 2.91283 3.11099 3.16050 3.41601 3.65499 3.73619 3.76311 3.91301 3.94558 4.11113 4.14491 4.20777 4.24757 4.27313 4.30463 4.34076 4.42758 4.52074 4.62339 4.67238 4.68316 4.71908 4.79990 4.82887 4.85711 4.89616 4.99977 5.00429 5.01906 5.08216 5.14944 5.19504 5.21645 5.29729 5.34369 5.39249 5.48795 5.55364 5.70522 5.81531 5.82542 6.09128 6.21852 6.25325 6.29345 6.82863 7.24257 7.35849 8.90052 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006316 B = 0.003665 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4432.283784 B = 7638.506525 C =11026.924097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.085 4.085 11 C 0.064 3.936 12 N -0.530 5.530 13 C 0.049 3.951 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.102 4.102 17 C 0.085 3.915 18 H 0.070 0.930 19 C 0.090 3.910 20 O -0.346 6.346 21 C 0.642 3.358 22 O -0.609 6.609 23 N -0.688 5.688 24 C 0.130 3.870 25 H 0.103 0.897 26 C -0.144 4.144 27 C 0.033 3.967 28 O -0.397 6.397 29 C 0.031 3.969 30 H 0.264 0.736 31 H -0.011 1.011 32 H -0.016 1.016 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.420 0.580 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.066 0.934 51 H 0.118 0.882 52 H 0.045 0.955 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -23.613 8.936 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.123 4.123 11 C -0.064 4.064 12 N -0.256 5.256 13 C -0.079 4.079 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.140 4.140 17 C -0.023 4.023 18 H 0.087 0.913 19 C 0.015 3.985 20 O -0.259 6.259 21 C 0.395 3.605 22 O -0.501 6.501 23 N -0.350 5.350 24 C 0.025 3.975 25 H 0.121 0.879 26 C -0.182 4.182 27 C -0.042 4.042 28 O -0.316 6.316 29 C -0.047 4.047 30 H 0.072 0.928 31 H 0.008 0.992 32 H 0.002 0.998 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.257 0.743 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.084 0.916 51 H 0.136 0.864 52 H 0.063 0.937 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.823 -23.349 9.425 26.681 hybrid contribution -0.598 1.331 -1.025 1.783 sum 8.225 -22.019 8.400 24.961 Atomic orbital electron populations 1.70103 1.07901 1.27853 1.51606 1.26010 0.95761 1.03458 0.94615 0.85493 0.78296 0.77948 0.79288 1.18867 1.20756 1.19206 1.21641 0.93512 0.92282 1.50688 0.92160 1.18945 0.94354 0.93353 0.94324 1.21359 0.97825 0.92508 1.00584 1.22065 0.93951 0.90997 0.99375 1.61958 1.23570 1.01575 1.38448 1.22219 0.95630 1.00487 0.89533 1.21564 0.96890 0.93850 1.02518 1.21573 0.99220 0.97068 0.97439 1.21544 0.96915 0.96119 0.99427 1.21889 0.95488 0.91039 0.93879 0.91289 1.23242 0.91995 1.02035 0.81199 1.86324 1.40421 1.85287 1.13824 1.18480 0.84048 0.75774 0.82174 1.90975 1.14293 1.57476 1.87338 1.44677 1.11075 1.76261 1.02939 1.22365 0.97710 0.96333 0.81048 0.87851 1.23503 0.99698 0.98360 0.96633 1.23967 0.87613 0.88802 1.03863 1.88906 1.39385 1.63285 1.40041 1.23666 0.98723 0.95241 0.87055 0.92770 0.99218 0.99807 0.93363 0.92676 0.95771 0.92316 0.95064 0.91395 0.91671 0.90205 0.89938 0.91763 0.91064 0.89906 0.92830 0.89359 0.74268 0.86923 0.86688 0.91564 0.86391 0.93668 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -32.14 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.08 -3.71 5.01 30.59 0.15 -3.55 16 11 C 0.06 2.33 4.63 86.30 0.40 2.73 16 12 N -0.53 -15.41 4.45 -871.10 -3.87 -19.29 16 13 C 0.05 1.26 5.27 86.32 0.45 1.71 16 14 C -0.11 -2.12 6.09 30.64 0.19 -1.93 16 15 C -0.12 -1.80 6.00 30.67 0.18 -1.62 16 16 C -0.10 -1.83 5.21 30.64 0.16 -1.67 16 17 C 0.09 2.00 2.23 44.94 0.10 2.10 16 18 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 19 C 0.09 2.37 4.67 71.98 0.34 2.71 16 20 O -0.35 -9.46 9.38 -55.41 -0.52 -9.98 16 21 C 0.64 18.05 8.75 129.79 1.14 19.18 16 22 O -0.61 -21.06 15.81 19.79 0.31 -20.75 16 23 N -0.69 -13.99 5.00 -565.39 -2.83 -16.81 16 24 C 0.13 2.36 3.37 45.98 0.15 2.52 16 25 H 0.10 2.03 7.61 -2.39 -0.02 2.01 16 26 C -0.14 -1.46 6.81 32.02 0.22 -1.24 16 27 C 0.03 0.46 7.73 72.79 0.56 1.02 16 28 O -0.40 -9.19 11.52 -148.98 -1.72 -10.91 16 29 C 0.03 0.75 7.50 72.35 0.54 1.29 16 30 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 2.31 6.34 -2.38 -0.02 2.29 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 2.30 5.73 -2.39 -0.01 2.29 16 37 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 1.98 6.10 -2.39 -0.01 1.96 16 39 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.07 1.43 7.57 -2.38 -0.02 1.41 16 44 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.05 1.69 5.97 -2.39 -0.01 1.67 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.42 6.48 8.67 -92.70 -0.80 5.67 16 48 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.11 0.66 7.98 -2.39 -0.02 0.64 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.05 1.28 7.93 -2.39 -0.02 1.26 16 53 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -75.73 413.34 -0.80 -76.53 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.08 Total: 18.82 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.43 Total: -6.55 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -6.42 Total: -94.65 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.92 Total: -41.63 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.73 -0.80 -76.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375754365.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.111 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds