Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99892 * 2 1 4 4 O 1.20820 * 119.99824 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99828 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.49572 * 300.06939 * 5 3 2 7 7 C 1.53038 * 109.49571 * 180.02562 * 5 3 2 8 8 C 1.53043 * 109.53598 * 178.68428 * 7 5 3 9 9 C 1.53186 * 109.31463 * 61.36455 * 8 7 5 10 10 N 1.46928 * 108.77275 * 305.36497 * 9 8 7 11 11 C 1.34786 * 120.62938 * 233.58628 * 10 9 8 12 12 O 1.21585 * 119.99996 * 174.77375 * 11 10 9 13 13 N 1.34774 * 119.99741 * 354.77295 * 11 10 9 14 14 C 1.46501 * 119.99692 * 184.98272 * 13 11 10 15 15 C 1.53006 * 109.47261 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47005 * 300.00297 * 15 14 13 17 17 C 1.53007 * 109.46832 * 59.99843 * 15 14 13 18 18 C 1.52990 * 109.47328 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.47404 * 179.97438 * 18 15 14 20 20 H 1.08000 * 119.99448 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00094 * 179.97438 * 19 18 15 22 22 N 1.31505 * 120.00211 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99564 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46956 * 90.00329 * 23 21 19 25 25 H 1.48502 * 109.46666 * 210.00067 * 23 21 19 26 26 H 1.48501 * 109.47316 * 329.99988 * 23 21 19 27 27 C 1.46926 * 118.74183 * 53.61082 * 10 9 8 28 28 H 1.08997 * 109.46534 * 299.99583 * 1 2 3 29 29 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47172 * 59.99368 * 1 2 3 31 31 H 1.08995 * 109.47370 * 60.00132 * 6 5 3 32 32 H 1.08998 * 109.46627 * 180.02562 * 6 5 3 33 33 H 1.09007 * 109.46918 * 300.00049 * 6 5 3 34 34 H 1.08998 * 109.45887 * 298.70117 * 7 5 3 35 35 H 1.09005 * 109.46076 * 58.66682 * 7 5 3 36 36 H 1.08998 * 109.49447 * 181.32045 * 8 7 5 37 37 H 1.09003 * 109.49755 * 301.37673 * 8 7 5 38 38 H 1.08998 * 109.58945 * 65.14850 * 9 8 7 39 39 H 1.09004 * 109.58746 * 185.57862 * 9 8 7 40 40 H 0.96996 * 120.00236 * 4.98785 * 13 11 10 41 41 H 1.09002 * 109.47063 * 300.00022 * 14 13 11 42 42 H 1.08991 * 109.47295 * 60.00335 * 14 13 11 43 43 H 1.09001 * 109.47518 * 59.99516 * 16 15 14 44 44 H 1.08995 * 109.47289 * 180.02562 * 16 15 14 45 45 H 1.09007 * 109.46658 * 299.99795 * 16 15 14 46 46 H 1.08994 * 109.46763 * 60.00186 * 17 15 14 47 47 H 1.08995 * 109.46528 * 180.02562 * 17 15 14 48 48 H 1.09001 * 109.47045 * 300.00087 * 17 15 14 49 49 H 1.08999 * 109.47612 * 300.00085 * 18 15 14 50 50 H 1.09007 * 109.47048 * 59.99768 * 18 15 14 51 51 H 0.97004 * 120.00453 * 179.97438 * 22 21 19 52 52 H 1.08999 * 109.58624 * 186.60215 * 27 10 9 53 53 H 1.08994 * 109.58394 * 66.17622 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.1146 0.5797 1.2473 7 6 4.0009 2.7423 0.0002 8 6 5.5288 2.8235 0.0327 9 6 6.0988 2.1511 -1.2202 10 7 5.5689 0.7834 -1.3053 11 6 6.4016 -0.2692 -1.4288 12 8 5.9586 -1.4012 -1.4028 13 7 7.7253 -0.0669 -1.5812 14 6 8.6168 -1.2038 -1.8246 15 6 10.0565 -0.7034 -1.9587 16 6 10.1487 0.2769 -3.1297 17 6 10.4729 0.0039 -0.6674 18 6 10.9875 -1.8906 -2.2123 19 6 12.4054 -1.3978 -2.3450 20 1 12.6209 -0.3432 -2.2568 21 6 13.4276 -2.2933 -2.5779 22 7 13.1652 -3.5775 -2.6848 23 14 15.1853 -1.6823 -2.7417 24 1 15.8324 -1.6724 -1.4051 25 1 15.9396 -2.5827 -3.6502 26 1 15.1811 -0.3062 -3.2998 27 6 4.1140 0.5849 -1.2539 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 3.8058 -0.4656 1.2461 32 1 5.2031 0.6374 1.2466 33 1 3.7255 1.0725 2.1383 34 1 3.6304 3.2312 -0.9008 35 1 3.5919 3.2417 0.8786 36 1 5.8371 3.8687 0.0569 37 1 5.9014 2.3137 0.9212 38 1 5.8008 2.7141 -2.1047 39 1 7.1863 2.1183 -1.1546 40 1 8.0878 0.8313 -1.5296 41 1 8.5514 -1.9019 -0.9901 42 1 8.3199 -1.7078 -2.7443 43 1 9.4854 1.1228 -2.9486 44 1 11.1744 0.6331 -3.2255 45 1 9.8520 -0.2270 -4.0496 46 1 10.4071 -0.6945 0.1668 47 1 11.4983 0.3607 -0.7632 48 1 9.8096 0.8497 -0.4864 49 1 10.9217 -2.5888 -1.3778 50 1 10.6909 -2.3950 -3.1321 51 1 13.8843 -4.2075 -2.8491 52 1 3.8920 -0.4814 -1.2105 53 1 3.6543 1.0202 -2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413540529.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -145.831826 kcal Electronic energy + Delta-G solvation = -31292.252820 eV Core-core repulsion = 27162.966819 eV Total energy + Delta-G solvation = -4129.286001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.24106 -41.25480 -39.35984 -38.37934 -37.51119 -35.46875 -34.71733 -33.61501 -32.82845 -29.15962 -28.74173 -28.42780 -27.92349 -27.55287 -26.23500 -25.10434 -24.45123 -22.90532 -21.24363 -20.37293 -19.64099 -18.98365 -18.46005 -18.31968 -17.75266 -17.53498 -17.11931 -16.57494 -16.46561 -15.75547 -15.58443 -15.44924 -15.30241 -14.98590 -14.81666 -14.55263 -14.37057 -14.31235 -14.17732 -13.90665 -13.74194 -13.64506 -13.47418 -12.92840 -12.86464 -12.80445 -12.69741 -12.55306 -12.37582 -12.30343 -12.19981 -12.07886 -12.00085 -11.92057 -11.82864 -11.55967 -11.49994 -11.47662 -11.20095 -10.93842 -10.81548 -10.48637 -10.17867 -9.51544 -8.11174 -6.18733 0.98680 1.44581 1.45038 1.50274 1.55384 1.77662 2.14152 2.46393 2.95098 3.23366 3.39934 3.56102 3.64068 3.91197 3.98051 4.04573 4.07743 4.13403 4.26094 4.26908 4.30771 4.43502 4.45860 4.59945 4.64753 4.67237 4.71410 4.73316 4.77359 4.78533 4.82552 4.87442 5.00251 5.01680 5.07902 5.11783 5.15777 5.16272 5.29072 5.40670 5.43060 5.48760 5.52304 5.54278 5.57947 5.62542 5.84554 5.89842 5.93342 6.33838 6.60810 6.95517 6.99328 7.48810 7.56745 9.01295 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.002155 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.251626 B =12991.756815 C =13519.632076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.477 3.523 4 O -0.525 6.525 5 C -0.062 4.062 6 C -0.134 4.134 7 C -0.094 4.094 8 C -0.129 4.129 9 C 0.100 3.900 10 N -0.620 5.620 11 C 0.703 3.297 12 O -0.634 6.634 13 N -0.723 5.723 14 C 0.161 3.839 15 C -0.063 4.063 16 C -0.121 4.121 17 C -0.120 4.120 18 C 0.039 3.961 19 C -0.511 4.511 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.939 5.939 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.258 1.258 27 C 0.146 3.854 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.408 0.592 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.069 0.931 49 H -0.014 1.014 50 H -0.014 1.014 51 H 0.259 0.741 52 H 0.084 0.916 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.932 17.057 6.410 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.320 3.680 4 O -0.414 6.414 5 C -0.064 4.064 6 C -0.191 4.191 7 C -0.132 4.132 8 C -0.167 4.167 9 C -0.022 4.022 10 N -0.357 5.357 11 C 0.405 3.595 12 O -0.515 6.515 13 N -0.381 5.381 14 C 0.036 3.964 15 C -0.064 4.064 16 C -0.178 4.178 17 C -0.178 4.178 18 C 0.002 3.998 19 C -0.549 4.549 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.580 5.580 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.182 1.182 27 C 0.022 3.978 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.004 0.996 50 H 0.004 0.996 51 H 0.067 0.933 52 H 0.102 0.898 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.381 16.380 6.370 28.457 hybrid contribution 0.815 -0.361 -0.178 0.909 sum -21.565 16.020 6.192 27.569 Atomic orbital electron populations 1.23570 0.74684 1.05648 1.02743 1.86558 1.25114 1.33004 1.83301 1.23733 0.91818 0.81210 0.71245 1.90643 1.67492 1.36961 1.46278 1.20971 0.86084 1.00353 0.98978 1.21808 1.02223 1.00221 0.94858 1.21462 0.96648 0.90944 1.04139 1.22001 0.93820 1.03034 0.97843 1.22027 0.99494 0.80721 0.99968 1.47131 1.05288 1.06095 1.77232 1.15990 0.81701 0.84202 0.77651 1.90893 1.76912 1.23376 1.60301 1.45182 1.04685 1.11427 1.76853 1.21061 0.88554 0.87461 0.99293 1.20701 0.91523 0.97034 0.97108 1.21686 1.01913 0.97833 0.96354 1.21685 1.01573 0.99262 0.95251 1.18971 0.93982 0.92604 0.94257 1.21592 0.92391 0.94016 1.46885 0.90794 1.25961 1.03655 0.95046 0.95721 1.70122 1.33580 1.02886 1.51414 0.85541 0.79652 0.78545 0.77860 1.20222 1.21781 1.18234 1.21301 0.79188 1.01796 0.95538 0.91593 0.85562 0.91638 0.92437 0.90758 0.90937 0.90481 0.90368 0.87131 0.90876 0.89101 0.88946 0.75154 0.93909 0.93940 0.91198 0.92512 0.94500 0.94494 0.92472 0.91217 0.99602 0.99604 0.93250 0.89786 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.93 10.40 -51.43 -0.53 -7.47 16 3 C 0.48 9.39 6.56 71.24 0.47 9.86 16 4 O -0.52 -12.12 15.73 21.98 0.35 -11.78 16 5 C -0.06 -1.05 0.71 -52.85 -0.04 -1.08 16 6 C -0.13 -2.32 7.92 71.98 0.57 -1.75 16 7 C -0.09 -1.20 4.00 30.62 0.12 -1.08 16 8 C -0.13 -1.22 5.74 30.67 0.18 -1.05 16 9 C 0.10 1.21 6.39 86.36 0.55 1.76 16 10 N -0.62 -12.64 2.41 -836.92 -2.02 -14.66 16 11 C 0.70 20.52 8.29 179.05 1.49 22.00 16 12 O -0.63 -24.61 15.77 -3.98 -0.06 -24.67 16 13 N -0.72 -19.54 4.87 -478.53 -2.33 -21.87 16 14 C 0.16 5.70 4.57 86.38 0.39 6.09 16 15 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 16 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 17 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 18 C 0.04 1.98 4.04 29.84 0.12 2.10 16 19 C -0.51 -26.92 7.65 25.60 0.20 -26.72 16 20 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 21 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 22 N -0.94 -56.86 13.29 21.45 0.28 -56.57 16 23 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 27 C 0.15 2.92 5.05 86.36 0.44 3.35 16 28 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.06 1.17 8.11 -2.39 -0.02 1.15 16 32 H 0.07 1.35 5.97 -2.39 -0.01 1.33 16 33 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 35 H 0.08 1.01 8.07 -2.38 -0.02 0.99 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.79 6.34 -2.39 -0.02 0.77 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.95 5.65 -2.38 -0.01 0.94 16 40 H 0.41 8.35 3.65 -92.71 -0.34 8.01 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 44 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 45 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.06 1.96 6.62 -2.39 -0.02 1.95 16 48 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 49 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 50 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 51 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 52 H 0.08 2.14 7.00 -2.39 -0.02 2.12 16 53 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.86 406.58 5.54 -68.31 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.56 Total: 17.40 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 7.27 Total: 6.15 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.06 Total: -93.10 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.25 Total: -43.92 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.86 5.54 -68.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413540529.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.517 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds