Wall clock time and date at job start Sat Apr 11 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47075 * 239.99716 * 3 2 1 5 5 H 1.48496 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47093 * 120.00100 * 3 2 1 7 7 C 1.37885 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99518 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00213 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00400 * 263.73542 * 10 9 7 12 12 C 1.52996 * 109.46983 * 269.99915 * 11 10 9 13 13 N 1.46894 * 109.47071 * 179.97438 * 12 11 10 14 14 C 1.47008 * 111.00249 * 293.63149 * 13 12 11 15 15 C 1.53103 * 109.26306 * 177.60698 * 14 13 12 16 16 O 1.43013 * 109.25531 * 56.84628 * 15 14 13 17 17 C 1.43009 * 113.74526 * 301.33600 * 16 15 14 18 18 C 1.47021 * 111.00095 * 169.99621 * 13 12 11 19 19 C 1.34773 * 119.99680 * 83.73098 * 10 9 7 20 20 O 1.21282 * 120.00112 * 184.73376 * 19 10 9 21 21 C 1.50708 * 120.00085 * 4.73291 * 19 10 9 22 22 H 1.08998 * 109.47071 * 315.96339 * 21 19 10 23 23 C 1.53004 * 109.46911 * 75.96284 * 21 19 10 24 24 C 1.52995 * 109.46900 * 180.02562 * 23 21 19 25 25 C 1.52999 * 109.47158 * 299.99866 * 24 23 21 26 26 C 1.53004 * 109.47106 * 60.00260 * 25 24 23 27 27 H 1.09000 * 109.46988 * 179.97438 * 26 25 24 28 28 O 1.42898 * 109.47011 * 60.00119 * 26 25 24 29 29 C 1.52995 * 109.46900 * 299.99898 * 26 25 24 30 30 H 0.97003 * 120.00220 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46789 * 60.00298 * 9 7 2 32 32 H 1.09001 * 109.47351 * 300.00635 * 9 7 2 33 33 H 1.09003 * 109.46746 * 29.99532 * 11 10 9 34 34 H 1.08992 * 109.47237 * 149.99814 * 11 10 9 35 35 H 1.09007 * 109.46937 * 299.99903 * 12 11 10 36 36 H 1.08997 * 109.47679 * 59.99882 * 12 11 10 37 37 H 1.09002 * 109.51261 * 297.54142 * 14 13 12 38 38 H 1.09000 * 109.50460 * 57.67504 * 14 13 12 39 39 H 1.09001 * 109.50366 * 296.91866 * 15 14 13 40 40 H 1.08997 * 109.54326 * 176.80927 * 15 14 13 41 41 H 1.09001 * 109.50312 * 298.73551 * 17 16 15 42 42 H 1.09003 * 109.54615 * 178.62609 * 17 16 15 43 43 H 1.08990 * 109.50654 * 302.32987 * 18 13 12 44 44 H 1.09000 * 109.50337 * 62.41712 * 18 13 12 45 45 H 1.08998 * 109.47208 * 60.00139 * 23 21 19 46 46 H 1.09000 * 109.46988 * 300.00357 * 23 21 19 47 47 H 1.09000 * 109.46968 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.47158 * 60.00008 * 24 23 21 49 49 H 1.08998 * 109.47202 * 300.00115 * 25 24 23 50 50 H 1.09004 * 109.47322 * 180.02562 * 25 24 23 51 51 H 0.96699 * 114.00607 * 59.99625 * 28 26 25 52 52 H 1.09000 * 109.46966 * 180.02562 * 29 26 25 53 53 H 1.08998 * 109.47158 * 299.99992 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0015 11 6 2.5727 -4.2601 -1.2596 12 6 1.6117 -5.4171 -1.5399 13 7 1.9821 -6.0659 -2.8047 14 6 1.7701 -5.1603 -3.9432 15 6 2.2237 -5.8532 -5.2310 16 8 1.5126 -7.0851 -5.3793 17 6 1.6969 -7.9913 -4.2885 18 6 1.2381 -7.3201 -2.9912 19 6 2.7385 -4.0416 1.1615 20 8 3.5902 -4.9050 1.1536 21 6 2.2791 -3.4482 2.4684 22 1 2.2065 -2.3651 2.3701 23 6 0.9080 -4.0203 2.8342 24 6 0.4414 -3.4174 4.1607 25 6 1.4479 -3.7628 5.2600 26 6 2.8190 -3.1908 4.8942 27 1 3.5359 -3.4365 5.6776 28 8 2.7236 -1.7709 4.7648 29 6 3.2856 -3.7937 3.5677 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5575 -0.8881 32 1 0.6245 -2.5563 0.8919 33 1 2.5145 -3.5347 -2.0711 34 1 3.5906 -4.6429 -1.1867 35 1 1.6699 -6.1425 -0.7284 36 1 0.5937 -5.0344 -1.6129 37 1 0.7117 -4.9107 -4.0177 38 1 2.3501 -4.2492 -3.7965 39 1 3.2936 -6.0546 -5.1784 40 1 2.0162 -5.2080 -6.0847 41 1 2.7516 -8.2549 -4.2086 42 1 1.1085 -8.8927 -4.4598 43 1 1.4298 -7.9855 -2.1496 44 1 0.1711 -7.1051 -3.0496 45 1 0.9806 -5.1034 2.9326 46 1 0.1909 -3.7738 2.0513 47 1 -0.5352 -3.8252 4.4216 48 1 0.3686 -2.3343 4.0620 49 1 1.5206 -4.8459 5.3588 50 1 1.1152 -3.3337 6.2052 51 1 2.4323 -1.3212 5.5698 52 1 4.2626 -3.3865 3.3073 53 1 3.3584 -4.8767 3.6665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439462987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:02 Heat of formation + Delta-G solvation = -162.131365 kcal Electronic energy + Delta-G solvation = -31925.333193 eV Core-core repulsion = 27795.340391 eV Total energy + Delta-G solvation = -4129.992802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41492 -40.53403 -39.34457 -37.43534 -36.43717 -35.84456 -34.55109 -32.33143 -32.08571 -31.19884 -30.46431 -29.02762 -27.26223 -25.20095 -25.05490 -24.38810 -23.43138 -22.85224 -21.39204 -20.82079 -19.83700 -18.67515 -17.94141 -17.86384 -17.60219 -17.18450 -17.02433 -16.47816 -16.32343 -16.15238 -16.01463 -15.89011 -15.47046 -15.41225 -15.05581 -14.73933 -14.41942 -14.36832 -13.96454 -13.91667 -13.49057 -13.40307 -13.34897 -13.17062 -13.14962 -12.90620 -12.71021 -12.53776 -12.46530 -12.34650 -12.18511 -12.06360 -11.86418 -11.77501 -11.74102 -11.55422 -11.45759 -11.26637 -10.73904 -10.66899 -10.52145 -10.39997 -9.59854 -9.41904 -8.21219 -6.34470 1.39860 1.41521 1.48633 1.74550 2.14751 2.41725 2.81592 2.96384 3.09439 3.44291 3.62220 3.78145 3.80976 3.88289 3.96011 3.98411 4.04905 4.16609 4.22274 4.25745 4.31079 4.31978 4.36297 4.41001 4.50262 4.55346 4.56204 4.67177 4.68626 4.72824 4.78446 4.79941 4.82629 4.89006 4.93861 4.98718 5.01132 5.05768 5.12963 5.24136 5.28407 5.30829 5.38949 5.55510 5.63712 5.75227 5.89019 5.89177 6.06351 6.14201 6.52999 6.79764 7.05392 7.29650 7.40633 8.84145 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.003782 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.503919 B = 7402.316578 C = 9489.802328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.029 3.971 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.044 0.956 9 C 0.254 3.746 10 N -0.599 5.599 11 C 0.126 3.874 12 C 0.063 3.937 13 N -0.539 5.539 14 C 0.011 3.989 15 C 0.069 3.931 16 O -0.402 6.402 17 C 0.066 3.934 18 C 0.017 3.983 19 C 0.517 3.483 20 O -0.593 6.593 21 C -0.095 4.095 22 H 0.087 0.913 23 C -0.101 4.101 24 C -0.108 4.108 25 C -0.142 4.142 26 C 0.107 3.893 27 H 0.078 0.922 28 O -0.583 6.583 29 C -0.089 4.089 30 H 0.268 0.732 31 H 0.016 0.984 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.389 0.611 52 H 0.045 0.955 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -11.391 3.057 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.062 0.938 9 C 0.134 3.866 10 N -0.329 5.329 11 C 0.002 3.998 12 C -0.066 4.066 13 N -0.265 5.265 14 C -0.117 4.117 15 C -0.008 4.008 16 O -0.321 6.321 17 C -0.010 4.010 18 C -0.111 4.111 19 C 0.307 3.693 20 O -0.476 6.476 21 C -0.116 4.116 22 H 0.105 0.895 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.180 4.180 26 C 0.048 3.952 27 H 0.096 0.904 28 O -0.391 6.391 29 C -0.127 4.127 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.112 0.888 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.072 0.928 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.238 0.762 52 H 0.064 0.936 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.041 -11.995 2.277 12.254 hybrid contribution -0.561 1.711 0.459 1.858 sum 0.480 -10.284 2.736 10.653 Atomic orbital electron populations 1.69980 1.06975 1.28161 1.50297 1.25526 0.95528 1.01890 0.94218 0.85732 0.78614 0.79385 0.78731 1.19880 1.20225 1.20017 1.21562 0.92875 0.91870 1.52123 0.93795 1.19154 0.87436 0.82544 0.97485 1.48180 1.44885 1.33838 1.06000 1.21192 0.98692 0.94023 0.85882 1.22200 0.96511 0.96105 0.91761 1.62150 1.57123 1.05580 1.01622 1.22916 1.00066 0.96929 0.91772 1.22733 0.96362 0.85279 0.96439 1.87940 1.71887 1.28280 1.43998 1.22789 1.01937 0.92356 0.83961 1.22875 0.95937 0.91803 1.00517 1.21069 0.80347 0.81189 0.86672 1.90544 1.33842 1.34917 1.88290 1.21137 0.97430 1.02019 0.91021 0.89450 1.21449 0.93758 0.99873 0.98772 1.21383 0.99076 1.00735 0.93397 1.22222 0.94537 1.02396 0.98795 1.21836 0.96663 0.80759 0.95924 0.90433 1.86632 1.91017 1.19510 1.41927 1.21346 0.97053 1.00882 0.93411 0.92298 0.96609 0.94288 0.91086 0.91168 0.91280 0.95386 0.94746 0.89550 0.91694 0.86656 0.91806 0.86124 0.88758 0.94507 0.91405 0.92866 0.90262 0.92806 0.89823 0.89188 0.76173 0.93598 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.72 13.29 21.45 0.28 -50.44 16 2 C 0.03 1.57 5.46 84.66 0.46 2.03 16 3 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.55 -29.42 8.57 25.60 0.22 -29.20 16 8 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.25 12.46 4.79 85.63 0.41 12.87 16 10 N -0.60 -26.33 2.47 -826.16 -2.04 -28.37 16 11 C 0.13 4.91 5.35 86.38 0.46 5.38 16 12 C 0.06 2.13 5.28 86.30 0.46 2.59 16 13 N -0.54 -15.56 4.73 -895.23 -4.23 -19.79 16 14 C 0.01 0.31 5.44 86.32 0.47 0.77 16 15 C 0.07 1.54 7.01 72.02 0.50 2.05 16 16 O -0.40 -9.77 10.83 -148.98 -1.61 -11.38 16 17 C 0.07 1.34 7.01 72.02 0.50 1.84 16 18 C 0.02 0.40 5.65 86.31 0.49 0.88 16 19 C 0.52 22.59 6.81 87.66 0.60 23.19 16 20 O -0.59 -27.55 15.56 -3.04 -0.05 -27.59 16 21 C -0.09 -3.69 1.54 -11.54 -0.02 -3.71 16 22 H 0.09 4.06 6.24 -2.39 -0.01 4.04 16 23 C -0.10 -3.33 4.93 30.59 0.15 -3.18 16 24 C -0.11 -2.92 5.78 30.59 0.18 -2.74 16 25 C -0.14 -2.98 5.64 30.59 0.17 -2.80 16 26 C 0.11 2.72 3.77 30.59 0.12 2.84 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 O -0.58 -17.07 11.97 -148.98 -1.78 -18.85 16 29 C -0.09 -2.96 4.36 30.59 0.13 -2.83 16 30 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.02 0.82 8.02 -2.38 -0.02 0.80 16 32 H 0.04 1.97 4.84 -2.39 -0.01 1.96 16 33 H 0.07 2.78 6.45 -2.39 -0.02 2.77 16 34 H 0.07 2.88 7.36 -2.39 -0.02 2.87 16 35 H 0.07 2.39 8.04 -2.38 -0.02 2.37 16 36 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 2.42 6.38 -2.39 -0.02 2.40 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 44 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.05 1.96 6.13 -2.39 -0.01 1.95 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.05 1.69 7.68 -2.39 -0.02 1.67 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.39 7.44 9.08 -74.06 -0.67 6.77 16 52 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 53 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 Total: -1.00 -66.74 405.25 -1.89 -68.63 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.22 Total: 32.68 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.30 Total: 9.99 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.99 Total: -98.60 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -3.44 Total: -57.83 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.74 -1.89 -68.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439462987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.503 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds