Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37101 * 119.99677 * 2 1 4 4 H 1.08000 * 120.00102 * 154.96563 * 3 2 1 5 5 C 1.38951 * 120.00269 * 334.95927 * 3 2 1 6 6 N 1.31418 * 119.99913 * 331.50927 * 5 3 2 7 7 Si 1.86798 * 120.00224 * 151.50718 * 5 3 2 8 8 H 1.48498 * 109.47005 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47139 * 300.00151 * 7 5 3 10 10 H 1.48505 * 109.46986 * 60.00191 * 7 5 3 11 11 C 1.34769 * 120.00089 * 179.97438 * 2 1 3 12 12 O 1.21302 * 119.99901 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00204 * 0.02562 * 11 2 1 14 14 H 1.09001 * 109.46902 * 299.99893 * 13 11 2 15 15 C 1.53006 * 109.47127 * 59.99943 * 13 11 2 16 16 C 1.52994 * 109.47097 * 60.00161 * 15 13 11 17 17 C 1.52998 * 109.47434 * 60.00035 * 16 15 13 18 18 C 1.52998 * 109.47048 * 299.99908 * 17 16 15 19 19 C 1.52998 * 109.47124 * 179.97438 * 13 11 2 20 20 C 1.52995 * 109.47217 * 60.00294 * 19 13 11 21 21 N 1.46508 * 109.47103 * 179.97438 * 19 13 11 22 22 C 1.34769 * 120.00184 * 180.02562 * 21 19 13 23 23 O 1.21518 * 120.00126 * 359.97438 * 22 21 19 24 24 O 1.34634 * 120.00302 * 180.02562 * 22 21 19 25 25 C 1.45197 * 117.00282 * 180.02562 * 24 22 21 26 26 C 1.52994 * 109.47450 * 59.99675 * 25 24 22 27 27 C 1.52997 * 109.47355 * 179.97438 * 25 24 22 28 28 C 1.53003 * 109.46861 * 299.99404 * 25 24 22 29 29 H 1.08999 * 109.46572 * 92.25037 * 1 2 3 30 30 H 1.09001 * 109.46859 * 212.24654 * 1 2 3 31 31 H 1.08998 * 109.47539 * 332.25227 * 1 2 3 32 32 H 0.97004 * 119.99576 * 353.95957 * 6 5 3 33 33 H 1.08999 * 109.46726 * 180.02562 * 15 13 11 34 34 H 1.09004 * 109.46744 * 299.99934 * 15 13 11 35 35 H 1.09008 * 109.46970 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47153 * 300.00101 * 16 15 13 37 37 H 1.09000 * 109.46897 * 59.99909 * 17 16 15 38 38 H 1.09001 * 109.47359 * 179.97438 * 17 16 15 39 39 H 1.08995 * 109.47285 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47272 * 299.99771 * 18 17 16 41 41 H 1.09001 * 109.47297 * 59.99545 * 20 19 13 42 42 H 1.09004 * 109.47499 * 179.97438 * 20 19 13 43 43 H 1.09000 * 109.46907 * 299.99651 * 20 19 13 44 44 H 0.97004 * 119.99296 * 0.02562 * 21 19 13 45 45 H 1.08994 * 109.47360 * 59.99907 * 26 25 24 46 46 H 1.09000 * 109.47489 * 180.02562 * 26 25 24 47 47 H 1.09009 * 109.46804 * 299.99980 * 26 25 24 48 48 H 1.09005 * 109.47252 * 59.99336 * 27 25 24 49 49 H 1.09005 * 109.47717 * 179.97438 * 27 25 24 50 50 H 1.09004 * 109.47346 * 300.00095 * 27 25 24 51 51 H 1.08999 * 109.47192 * 60.00238 * 28 25 24 52 52 H 1.09000 * 109.46998 * 179.97438 * 28 25 24 53 53 H 1.09000 * 109.47189 * 299.99818 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1544 1.2314 0.3958 5 6 1.5537 2.3342 -0.5093 6 7 0.6449 2.2379 -1.4538 7 14 2.0430 4.0127 0.1484 8 1 1.2660 5.0653 -0.5541 9 1 1.7578 4.0762 1.6044 10 1 3.4938 4.2308 -0.0818 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3855 -2.4722 0.0005 14 1 0.7585 -2.5298 0.8903 15 6 0.5063 -2.5536 -1.2491 16 6 1.3864 -2.4728 -2.4980 17 6 2.3807 -3.6357 -2.4974 18 6 3.2598 -3.5543 -1.2479 19 6 2.3798 -3.6351 0.0005 20 6 3.2593 -3.5541 1.2498 21 7 1.6473 -4.9039 0.0011 22 6 2.3212 -6.0711 0.0018 23 8 3.5363 -6.0711 0.0014 24 8 1.6481 -7.2371 0.0018 25 6 2.4389 -8.4548 0.0031 26 6 3.3206 -8.4890 1.2530 27 6 1.5070 -9.6682 0.0036 28 6 3.3225 -8.4903 -1.2455 29 1 -0.3632 -0.0404 -1.0269 30 1 -0.3633 -0.8692 0.5483 31 1 -0.3634 0.9094 0.4784 32 1 0.4537 1.3765 -1.8568 33 1 -0.0389 -3.4974 -1.2488 34 1 -0.2021 -1.7251 -1.2495 35 1 0.7599 -2.5304 -3.3882 36 1 1.9314 -1.5289 -2.4980 37 1 1.8357 -4.5797 -2.4974 38 1 3.0074 -3.5784 -3.3874 39 1 3.9679 -4.3830 -1.2472 40 1 3.8048 -2.6104 -1.2479 41 1 2.6327 -3.6118 2.1397 42 1 3.9674 -4.3828 1.2500 43 1 3.8043 -2.6101 1.2497 44 1 0.6773 -4.9039 0.0011 45 1 2.6912 -8.4637 2.1424 46 1 3.9146 -9.4030 1.2537 47 1 3.9846 -7.6245 1.2530 48 1 0.8784 -9.6440 -0.8867 49 1 2.1006 -10.5824 0.0041 50 1 0.8777 -9.6427 0.8933 51 1 3.9864 -7.6259 -1.2455 52 1 3.9165 -9.4042 -1.2444 53 1 2.6943 -8.4660 -2.1360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494335622.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -130.291582 kcal Electronic energy + Delta-G solvation = -33168.567294 eV Core-core repulsion = 29039.955168 eV Total energy + Delta-G solvation = -4128.612126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.44468 -41.31254 -39.24622 -37.55714 -36.87949 -35.37768 -34.70544 -33.74300 -32.05299 -31.74356 -28.33243 -28.30865 -28.25067 -27.76562 -26.22506 -24.31227 -23.99650 -22.21994 -21.92814 -20.77344 -20.03809 -19.37539 -18.98834 -17.64245 -17.29263 -17.13457 -16.81907 -16.45747 -16.24256 -15.71328 -15.62209 -15.51759 -15.33135 -14.91259 -14.75930 -14.49855 -14.38403 -14.12374 -13.75388 -13.67082 -13.46235 -13.30881 -13.19834 -13.03215 -12.93865 -12.84432 -12.81289 -12.61651 -12.55667 -12.46940 -12.39486 -12.23973 -12.13272 -11.92361 -11.87865 -11.60499 -11.37477 -11.26502 -11.19325 -10.85468 -10.68770 -10.10518 -10.00405 -9.75985 -8.71416 -5.97759 1.16501 1.52801 1.56275 1.82886 1.86569 2.03462 2.42124 2.88855 3.05179 3.24861 3.47589 3.70602 3.71193 3.80387 3.84632 3.99313 4.05016 4.08779 4.14728 4.33606 4.37779 4.40488 4.52596 4.57237 4.64072 4.64810 4.68092 4.72731 4.78637 4.80169 4.83029 4.86103 4.90353 4.91513 4.92079 5.02221 5.09399 5.15089 5.17740 5.24047 5.32322 5.33188 5.34488 5.39530 5.46643 5.55652 5.67658 5.86796 5.97234 6.53620 6.67753 6.97771 7.45891 7.47553 8.00003 8.54135 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.002931 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.436501 B = 9549.141219 C = 9777.721784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.466 5.466 3 C -0.428 4.428 4 H 0.057 0.943 5 C -0.021 4.021 6 N -0.888 5.888 7 Si 1.115 2.885 8 H -0.275 1.275 9 H -0.269 1.269 10 H -0.282 1.282 11 C 0.460 3.540 12 O -0.605 6.605 13 C -0.094 4.094 14 H 0.110 0.890 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.103 4.103 18 C -0.135 4.135 19 C 0.235 3.765 20 C -0.165 4.165 21 N -0.689 5.689 22 C 0.651 3.349 23 O -0.582 6.582 24 O -0.369 6.369 25 C 0.126 3.874 26 C -0.180 4.180 27 C -0.134 4.134 28 C -0.180 4.180 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.413 0.587 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.088 0.912 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -21.343 1.822 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.186 5.186 3 C -0.555 4.555 4 H 0.075 0.925 5 C -0.224 4.224 6 N -0.523 5.523 7 Si 0.936 3.064 8 H -0.200 1.200 9 H -0.195 1.195 10 H -0.208 1.208 11 C 0.250 3.750 12 O -0.491 6.491 13 C -0.116 4.116 14 H 0.128 0.872 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.141 4.141 18 C -0.173 4.173 19 C 0.150 3.850 20 C -0.223 4.223 21 N -0.350 5.350 22 C 0.404 3.596 23 O -0.473 6.473 24 O -0.284 6.284 25 C 0.090 3.910 26 C -0.237 4.237 27 C -0.191 4.191 28 C -0.237 4.237 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.251 0.749 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.119 0.881 50 H 0.088 0.912 51 H 0.078 0.922 52 H 0.107 0.893 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.678 -19.800 1.716 20.418 hybrid contribution 0.479 -1.154 -0.017 1.249 sum -4.199 -20.954 1.699 21.438 Atomic orbital electron populations 1.21896 0.80618 1.02162 1.00922 1.43716 1.05818 1.04792 1.64266 1.20238 1.02652 0.87699 1.44941 0.92541 1.27467 0.95549 1.05990 0.93423 1.70883 1.33828 1.28354 1.19190 0.82914 0.76126 0.70922 0.76439 1.20039 1.19465 1.20760 1.20382 0.87769 0.85440 0.81398 1.90410 1.15856 1.87126 1.55716 1.21334 0.97140 0.91330 1.01801 0.87224 1.21825 0.97291 1.04567 0.91725 1.21476 0.97774 0.97418 0.98772 1.21390 0.97330 0.98369 0.96966 1.22043 0.98558 1.02809 0.93874 1.19497 0.90300 0.79531 0.95639 1.22337 1.00446 1.03413 0.96120 1.44776 1.10543 1.02073 1.77570 1.18127 0.84123 0.81447 0.75885 1.90858 1.13372 1.87096 1.55939 1.86302 1.41465 1.13894 1.86696 1.22365 0.91552 0.80800 0.96292 1.22469 1.00456 1.04167 0.96619 1.21872 0.99374 0.94193 1.03674 1.22467 1.00442 1.04155 0.96623 0.92998 0.89422 0.92960 0.92106 0.87934 0.89840 0.90122 0.95805 0.91038 0.92691 0.91652 0.91525 0.92747 0.91862 0.91400 0.74917 0.92016 0.89248 0.92187 0.91146 0.88090 0.91154 0.92163 0.89286 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.42 7.08 127.77 0.90 4.32 16 2 N -0.47 -22.57 2.88 -658.88 -1.89 -24.47 16 3 C -0.43 -23.95 9.05 84.04 0.76 -23.19 16 4 H 0.06 3.48 7.57 -2.91 -0.02 3.46 16 5 C -0.02 -1.09 4.65 84.93 0.40 -0.69 16 6 N -0.89 -48.08 12.75 21.66 0.28 -47.81 16 7 Si 1.11 47.63 30.00 68.60 2.06 49.69 16 8 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 11 C 0.46 20.96 5.22 87.66 0.46 21.42 16 12 O -0.60 -32.32 11.07 -3.10 -0.03 -32.36 16 13 C -0.09 -3.08 1.32 -11.54 -0.02 -3.09 16 14 H 0.11 3.06 7.40 -2.39 -0.02 3.04 16 15 C -0.12 -3.21 4.94 30.59 0.15 -3.06 16 16 C -0.12 -3.72 5.70 30.59 0.17 -3.55 16 17 C -0.10 -3.20 5.77 30.59 0.18 -3.02 16 18 C -0.13 -4.94 4.25 30.58 0.13 -4.81 16 19 C 0.24 7.66 0.40 3.58 0.00 7.66 16 20 C -0.17 -6.02 8.10 71.98 0.58 -5.44 16 21 N -0.69 -17.77 4.05 -550.40 -2.23 -20.00 16 22 C 0.65 18.15 7.48 129.79 0.97 19.12 16 23 O -0.58 -19.22 8.08 19.78 0.16 -19.06 16 24 O -0.37 -8.69 9.94 -55.43 -0.55 -9.24 16 25 C 0.13 2.41 1.13 -10.80 -0.01 2.40 16 26 C -0.18 -3.51 8.37 71.98 0.60 -2.91 16 27 C -0.13 -1.62 8.85 71.98 0.64 -0.99 16 28 C -0.18 -3.52 8.37 71.98 0.60 -2.91 16 29 H 0.05 2.01 5.47 -2.39 -0.01 2.00 16 30 H 0.09 2.64 6.18 -2.39 -0.01 2.62 16 31 H 0.05 2.21 7.37 -2.39 -0.02 2.19 16 32 H 0.27 14.47 6.34 -92.71 -0.59 13.88 16 33 H 0.10 2.02 6.86 -2.39 -0.02 2.00 16 34 H 0.08 2.32 4.49 -2.38 -0.01 2.31 16 35 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.02 0.97 7.22 -2.39 -0.02 0.96 16 37 H 0.07 1.94 7.60 -2.39 -0.02 1.92 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 2.51 6.16 -2.39 -0.01 2.49 16 40 H 0.07 3.03 5.51 -2.39 -0.01 3.02 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.37 6.16 -2.38 -0.01 2.36 16 43 H 0.07 2.97 5.51 -2.39 -0.01 2.95 16 44 H 0.41 8.21 7.43 -92.71 -0.69 7.52 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.57 5.88 -2.38 -0.01 1.56 16 48 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 52 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.05 381.24 4.73 -65.33 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.42 Total: 36.66 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 6.52 Total: 1.26 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -3.84 Total: -92.28 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -0.43 Total: -60.66 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.06 Total: 49.69 kcal Total: -70.05 4.73 -65.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494335622.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.964 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds