Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53006 * 109.47217 * 240.00304 * 2 1 3 5 5 O 1.45194 * 109.47505 * 120.00125 * 2 1 3 6 6 C 1.34641 * 117.00021 * 59.99774 * 5 2 1 7 7 O 1.21511 * 119.99842 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00248 * 180.02562 * 6 5 2 9 9 C 1.46932 * 120.63127 * 359.97438 * 8 6 5 10 10 C 1.53189 * 108.77628 * 233.63129 * 9 8 6 11 11 C 1.53042 * 109.31608 * 305.36471 * 10 9 8 12 12 C 1.53044 * 109.53483 * 61.36292 * 11 10 9 13 13 C 1.53000 * 109.49332 * 178.65301 * 12 11 10 14 14 C 1.50699 * 109.49604 * 58.59077 * 12 11 10 15 15 O 1.21273 * 120.00480 * 0.06543 * 14 12 11 16 16 N 1.34777 * 119.99768 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00195 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47270 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46843 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00516 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99783 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 18 24 24 H 1.48503 * 109.47407 * 269.72718 * 23 21 19 25 25 H 1.48505 * 109.47281 * 29.72474 * 23 21 19 26 26 H 1.48501 * 109.47274 * 149.72572 * 23 21 19 27 27 C 1.46995 * 120.61849 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.47132 * 299.99886 * 1 2 3 29 29 H 1.09003 * 109.47351 * 60.00527 * 1 2 3 30 30 H 1.09003 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47321 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47487 * 300.00174 * 3 2 1 33 33 H 1.08998 * 109.47055 * 60.00066 * 3 2 1 34 34 H 1.09001 * 109.46706 * 300.00056 * 4 2 1 35 35 H 1.08994 * 109.47335 * 59.99892 * 4 2 1 36 36 H 1.08999 * 109.46767 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.58464 * 113.84597 * 9 8 6 38 38 H 1.09001 * 109.58581 * 353.41914 * 9 8 6 39 39 H 1.09002 * 109.50105 * 185.40873 * 10 9 8 40 40 H 1.09010 * 109.49814 * 65.31470 * 10 9 8 41 41 H 1.09002 * 109.45701 * 301.34876 * 11 10 9 42 42 H 1.08997 * 109.46187 * 181.38711 * 11 10 9 43 43 H 1.09002 * 109.47304 * 299.93403 * 13 12 11 44 44 H 1.09005 * 109.47100 * 59.93720 * 13 12 11 45 45 H 1.09000 * 109.46981 * 179.97438 * 13 12 11 46 46 H 0.97000 * 120.00327 * 0.02562 * 16 14 12 47 47 H 1.09006 * 109.46638 * 60.00394 * 17 16 14 48 48 H 1.08997 * 109.47029 * 300.00501 * 17 16 14 49 49 H 1.09001 * 109.46361 * 60.00590 * 18 17 16 50 50 H 1.08997 * 109.46991 * 300.00480 * 18 17 16 51 51 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 52 52 H 1.09005 * 109.62947 * 6.59479 * 27 8 6 53 53 H 1.09002 * 109.58307 * 246.14549 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0673 -2.6654 2.4170 9 6 2.9153 -2.0296 3.4346 10 6 4.1673 -2.8882 3.6397 11 6 3.7487 -4.3213 3.9764 12 6 2.9466 -4.9071 2.8121 13 6 2.5574 -6.3510 3.1356 14 6 3.7850 -4.8806 1.5601 15 8 4.9135 -4.4381 1.5952 16 7 3.2808 -5.3496 0.4015 17 6 4.0955 -5.3233 -0.8158 18 6 3.2926 -5.9081 -1.9796 19 6 4.1310 -5.8816 -3.2316 20 1 5.1358 -5.4869 -3.2005 21 6 3.6148 -6.3605 -4.4171 22 7 2.3908 -6.8398 -4.4553 23 14 4.6567 -6.3348 -5.9674 24 1 4.4428 -5.0532 -6.6865 25 1 6.0904 -6.4642 -5.6025 26 1 4.2654 -7.4665 -6.8456 27 6 1.6809 -4.0722 2.5971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 2.3660 -1.9546 4.3730 38 1 3.2059 -1.0344 3.0982 39 1 4.7584 -2.4798 4.4593 40 1 4.7622 -2.8881 2.7262 41 1 3.1332 -4.3179 4.8760 42 1 4.6376 -4.9286 4.1470 43 1 3.4586 -6.9445 3.2894 44 1 1.9510 -6.3696 4.0412 45 1 1.9858 -6.7677 2.3063 46 1 2.3782 -5.7037 0.3733 47 1 4.9974 -5.9159 -0.6621 48 1 4.3717 -4.2944 -1.0461 49 1 2.3910 -5.3150 -2.1331 50 1 3.0161 -6.9370 -1.7495 51 1 2.0275 -7.1763 -5.2895 52 1 1.1573 -4.4248 1.7084 53 1 1.0308 -4.1640 3.4672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495050766.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -156.065794 kcal Electronic energy + Delta-G solvation = -32683.858491 eV Core-core repulsion = 28554.128711 eV Total energy + Delta-G solvation = -4129.729779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23999 -41.27388 -38.99302 -37.60959 -36.60793 -35.52949 -34.92669 -34.36294 -32.94394 -31.32089 -28.40718 -28.32233 -27.99590 -27.02862 -26.64638 -24.30872 -23.35942 -22.90634 -22.30697 -20.56611 -20.22650 -18.93725 -18.57407 -17.87300 -17.58523 -17.09107 -16.84145 -16.52950 -16.43849 -16.25604 -15.57907 -15.45177 -15.40903 -15.02714 -14.88084 -14.46374 -14.40024 -14.33815 -14.13964 -13.57563 -13.34280 -13.28315 -13.16379 -13.07746 -13.04978 -12.97472 -12.90337 -12.86351 -12.78655 -12.56003 -12.50978 -12.32466 -12.29553 -11.89978 -11.74862 -11.66300 -11.49663 -11.46746 -11.40184 -11.03638 -10.64532 -10.52458 -10.01815 -9.71459 -8.27252 -6.38925 1.10358 1.37215 1.38594 1.50121 1.65152 1.78141 2.24095 2.42639 2.82949 3.06727 3.50663 3.62048 3.73004 3.77209 3.79865 3.92197 3.99353 4.14296 4.25171 4.33035 4.39774 4.42614 4.51885 4.57494 4.58480 4.65692 4.70898 4.72538 4.76075 4.77317 4.80520 4.81204 4.85457 4.86258 4.97211 5.06084 5.09247 5.21624 5.23586 5.25516 5.27685 5.32255 5.42432 5.45697 5.49847 5.51138 5.62087 5.74191 6.11428 6.28279 6.61028 6.73449 7.27121 7.28601 7.30355 8.84843 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008899 B = 0.004177 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.501472 B = 6702.446972 C = 8810.465461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.128 3.872 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.642 3.358 7 O -0.590 6.590 8 N -0.596 5.596 9 C 0.113 3.887 10 C -0.151 4.151 11 C -0.087 4.087 12 C -0.089 4.089 13 C -0.137 4.137 14 C 0.513 3.487 15 O -0.578 6.578 16 N -0.717 5.717 17 C 0.148 3.852 18 C 0.029 3.971 19 C -0.548 4.548 20 H 0.056 0.944 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.966 3.034 24 H -0.272 1.272 25 H -0.265 1.265 26 H -0.276 1.276 27 C 0.137 3.863 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.403 0.597 47 H 0.047 0.953 48 H 0.029 0.971 49 H -0.003 1.003 50 H 0.009 0.991 51 H 0.266 0.734 52 H 0.079 0.921 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 12.297 20.932 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.092 3.908 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.397 3.603 7 O -0.481 6.481 8 N -0.336 5.336 9 C -0.008 4.008 10 C -0.189 4.189 11 C -0.125 4.125 12 C -0.093 4.093 13 C -0.195 4.195 14 C 0.301 3.699 15 O -0.459 6.459 16 N -0.366 5.366 17 C 0.024 3.976 18 C -0.009 4.009 19 C -0.586 4.586 20 H 0.074 0.926 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.198 1.198 25 H -0.189 1.189 26 H -0.201 1.201 27 C 0.015 3.985 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.079 0.921 46 H 0.238 0.762 47 H 0.065 0.935 48 H 0.048 0.952 49 H 0.015 0.985 50 H 0.027 0.973 51 H 0.075 0.925 52 H 0.097 0.903 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.020 12.446 20.519 24.333 hybrid contribution 0.176 -0.481 -1.655 1.732 sum -3.844 11.965 18.865 22.668 Atomic orbital electron populations 1.22425 0.93328 1.03632 1.03788 1.22347 0.94967 0.92621 0.80864 1.21858 1.02088 0.90311 1.04655 1.22465 1.00796 1.02128 0.98455 1.86264 1.71646 1.23221 1.46872 1.18280 0.78955 0.81090 0.81960 1.90929 1.42749 1.70788 1.43644 1.47094 1.52976 1.12075 1.21492 1.21938 0.90981 0.96430 0.91466 1.22183 0.97510 0.95760 1.03454 1.21407 0.99785 0.95421 0.95877 1.21349 0.95651 0.99558 0.92787 1.21846 1.02801 0.90714 1.04111 1.21232 0.87342 0.75909 0.85384 1.90556 1.21504 1.47485 1.86350 1.46178 1.18469 1.63008 1.08971 1.21078 0.93898 0.98547 0.84032 1.19057 0.94765 0.95036 0.91996 1.21412 1.00579 1.41896 0.94719 0.92564 1.25898 0.96302 0.94323 1.02536 1.70078 1.16484 1.41845 1.28079 0.85431 0.79030 0.78080 0.78432 1.19787 1.18941 1.20104 1.21857 0.94752 0.77185 1.04682 0.90866 0.89429 0.92275 0.91868 0.88136 0.90073 0.92936 0.89359 0.93498 0.87727 0.89963 0.88451 0.92632 0.87133 0.91745 0.91874 0.87304 0.92071 0.76191 0.93473 0.95215 0.98464 0.97304 0.92476 0.90263 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.37 71.98 0.60 -3.54 16 2 C 0.13 3.33 1.13 -10.79 -0.01 3.32 16 3 C -0.13 -2.36 8.85 71.98 0.64 -1.73 16 4 C -0.18 -5.74 8.37 71.98 0.60 -5.13 16 5 O -0.37 -10.70 8.53 -55.50 -0.47 -11.18 16 6 C 0.64 20.67 7.74 129.79 1.00 21.68 16 7 O -0.59 -22.56 11.29 19.81 0.22 -22.34 16 8 N -0.60 -15.24 2.68 -949.16 -2.54 -17.78 16 9 C 0.11 2.19 6.45 86.36 0.56 2.75 16 10 C -0.15 -3.20 5.76 30.67 0.18 -3.03 16 11 C -0.09 -1.61 4.36 30.62 0.13 -1.47 16 12 C -0.09 -2.02 0.63 -52.86 -0.03 -2.05 16 13 C -0.14 -2.32 8.38 71.98 0.60 -1.72 16 14 C 0.51 17.92 5.90 87.66 0.52 18.44 16 15 O -0.58 -24.16 13.58 -3.01 -0.04 -24.20 16 16 N -0.72 -27.85 5.31 -463.06 -2.46 -30.31 16 17 C 0.15 7.07 5.61 86.38 0.48 7.56 16 18 C 0.03 1.58 5.09 29.85 0.15 1.74 16 19 C -0.55 -32.37 9.11 25.60 0.23 -32.13 16 20 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 21 C 0.01 0.49 5.46 84.66 0.46 0.95 16 22 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 23 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 C 0.14 3.00 5.06 86.33 0.44 3.43 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.79 5.88 -2.39 -0.01 1.77 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 2.10 5.88 -2.39 -0.01 2.08 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.71 6.93 -2.39 -0.02 1.69 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.76 5.37 -2.38 -0.01 1.75 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.06 1.12 7.56 -2.39 -0.02 1.10 16 46 H 0.40 14.47 7.26 -92.71 -0.67 13.79 16 47 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 50 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 52 H 0.08 2.14 6.30 -2.38 -0.02 2.12 16 53 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -78.39 409.57 3.79 -74.60 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.21 Total: 31.14 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.56 Total: 9.05 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.72 Total: -104.32 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -0.29 Total: -57.71 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -78.39 3.79 -74.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495050766.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.468 kcal (2) G-P(sol) polarization free energy of solvation -78.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds