Wall clock time and date at job start Sat Apr 11 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47213 * 2 1 4 4 C 1.53001 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45196 * 109.47366 * 120.00177 * 2 1 3 6 6 C 1.34639 * 117.00226 * 59.99512 * 5 2 1 7 7 O 1.21515 * 119.99877 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00521 * 180.02562 * 6 5 2 9 9 C 1.46932 * 120.62899 * 359.97438 * 8 6 5 10 10 C 1.53183 * 108.77875 * 233.59244 * 9 8 6 11 11 C 1.53044 * 109.31187 * 305.36136 * 10 9 8 12 12 C 1.53045 * 109.53293 * 61.36673 * 11 10 9 13 13 C 1.52998 * 109.49677 * 58.62231 * 12 11 10 14 14 C 1.50700 * 109.49460 * 178.68244 * 12 11 10 15 15 O 1.21283 * 120.00275 * 359.97438 * 14 12 11 16 16 N 1.34777 * 120.00075 * 179.97438 * 14 12 11 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.47211 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 C 1.46918 * 120.63498 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.47016 * 300.00293 * 1 2 3 29 29 H 1.09002 * 109.47076 * 59.99862 * 1 2 3 30 30 H 1.09000 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46901 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47212 * 300.00054 * 3 2 1 33 33 H 1.08997 * 109.46926 * 59.99779 * 3 2 1 34 34 H 1.09000 * 109.47187 * 300.00023 * 4 2 1 35 35 H 1.09001 * 109.47506 * 59.99672 * 4 2 1 36 36 H 1.08998 * 109.47306 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.58388 * 113.80022 * 9 8 6 38 38 H 1.08999 * 109.58389 * 353.37804 * 9 8 6 39 39 H 1.09005 * 109.49798 * 185.41709 * 10 9 8 40 40 H 1.08998 * 109.53060 * 65.33275 * 10 9 8 41 41 H 1.08993 * 109.46287 * 301.34923 * 11 10 9 42 42 H 1.09005 * 109.45157 * 181.37759 * 11 10 9 43 43 H 1.09003 * 109.46876 * 180.02562 * 13 12 11 44 44 H 1.09003 * 109.46953 * 300.05928 * 13 12 11 45 45 H 1.08994 * 109.47468 * 60.06199 * 13 12 11 46 46 H 0.97000 * 120.00140 * 0.02562 * 16 14 12 47 47 H 1.09000 * 109.47602 * 60.00059 * 17 16 14 48 48 H 1.09007 * 109.47337 * 299.99774 * 17 16 14 49 49 H 1.09000 * 109.47211 * 59.99311 * 18 17 16 50 50 H 1.09007 * 109.46376 * 299.99853 * 18 17 16 51 51 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 52 52 H 1.09004 * 109.58836 * 6.62324 * 27 8 6 53 53 H 1.08996 * 109.58798 * 246.19601 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6655 2.4171 9 6 2.9153 -2.0297 3.4346 10 6 4.1668 -2.8887 3.6405 11 6 3.7473 -4.3214 3.9778 12 6 2.9453 -4.9074 2.8134 13 6 3.7972 -4.8823 1.5428 14 6 2.5604 -6.3289 3.1329 15 8 2.8948 -6.8253 4.1878 16 7 1.8445 -7.0487 2.2464 17 6 1.4698 -8.4305 2.5572 18 6 0.6682 -9.0158 1.3928 19 6 0.2822 -10.4370 1.7128 20 1 0.5794 -10.8787 2.6525 21 6 -0.4449 -11.1752 0.8034 22 7 -0.8065 -10.6374 -0.3410 23 14 -0.9166 -12.9394 1.1967 24 1 -0.3926 -13.3047 2.5372 25 1 -2.3959 -13.0693 1.1907 26 1 -0.3359 -13.8467 0.1746 27 6 1.6803 -4.0712 2.5980 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 2.3657 -1.9538 4.3729 38 1 3.2065 -1.0347 3.0978 39 1 4.7577 -2.4802 4.4603 40 1 4.7625 -2.8894 2.7277 41 1 3.1316 -4.3174 4.8771 42 1 4.6360 -4.9291 4.1488 43 1 3.2254 -5.2993 0.7138 44 1 4.0753 -3.8539 1.3121 45 1 4.6978 -5.4763 1.6974 46 1 1.5773 -6.6519 1.4026 47 1 0.8622 -8.4475 3.4620 48 1 2.3702 -9.0249 2.7130 49 1 1.2761 -8.9988 0.4883 50 1 -0.2322 -8.4215 1.2367 51 1 -1.3177 -11.1570 -0.9810 52 1 1.1566 -4.4234 1.7092 53 1 1.0299 -4.1621 3.4679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495050767.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:57 Heat of formation + Delta-G solvation = -157.280276 kcal Electronic energy + Delta-G solvation = -31408.339925 eV Core-core repulsion = 27278.557482 eV Total energy + Delta-G solvation = -4129.782443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21611 -41.26981 -39.33135 -37.65205 -36.63277 -35.43169 -34.87387 -34.20213 -32.94553 -31.28799 -28.36608 -28.32442 -28.22722 -27.03094 -26.64879 -24.84588 -23.29033 -22.86281 -22.02191 -20.55546 -19.74843 -19.07690 -18.56373 -17.85080 -17.68474 -17.13590 -16.88548 -16.63695 -16.47663 -16.11354 -15.65950 -15.57797 -15.39936 -15.03202 -14.87737 -14.58978 -14.38755 -14.34820 -14.27206 -13.81868 -13.41070 -13.26771 -13.21507 -13.10797 -12.96478 -12.92081 -12.82307 -12.81496 -12.53680 -12.47702 -12.37535 -12.25813 -12.22464 -11.96382 -11.92700 -11.70443 -11.49405 -11.44533 -11.35548 -11.05744 -10.72198 -10.62810 -10.05994 -9.80538 -8.25194 -6.36200 1.01594 1.39943 1.40592 1.54004 1.57580 1.76649 2.19746 2.42982 2.80623 3.09411 3.45383 3.54543 3.68418 3.79295 3.83998 3.94388 3.98892 4.07740 4.11545 4.30732 4.43639 4.47394 4.47866 4.54913 4.59422 4.63261 4.65032 4.72655 4.75981 4.80489 4.81488 4.83553 4.87898 4.89857 4.92822 5.02342 5.09022 5.16100 5.18263 5.26032 5.32290 5.34105 5.40843 5.42139 5.46964 5.50625 5.55605 5.77021 6.14126 6.29145 6.54698 6.77584 7.18796 7.26631 7.33377 8.86936 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002554 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.708717 B =10960.347433 C =12548.177903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.359 6.359 6 C 0.649 3.351 7 O -0.592 6.592 8 N -0.588 5.588 9 C 0.107 3.893 10 C -0.126 4.126 11 C -0.093 4.093 12 C -0.082 4.082 13 C -0.134 4.134 14 C 0.519 3.481 15 O -0.577 6.577 16 N -0.716 5.716 17 C 0.141 3.859 18 C 0.022 3.978 19 C -0.544 4.544 20 H 0.060 0.940 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.277 1.277 27 C 0.145 3.855 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.406 0.594 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.006 0.994 50 H 0.006 0.994 51 H 0.266 0.734 52 H 0.087 0.913 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 28.593 3.041 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.274 6.274 6 C 0.405 3.595 7 O -0.483 6.483 8 N -0.328 5.328 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.131 4.131 12 C -0.086 4.086 13 C -0.191 4.191 14 C 0.306 3.694 15 O -0.457 6.457 16 N -0.367 5.367 17 C 0.017 3.983 18 C -0.016 4.016 19 C -0.583 4.583 20 H 0.079 0.921 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.791 3.209 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.202 1.202 27 C 0.022 3.978 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.241 0.759 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.024 0.976 50 H 0.024 0.976 51 H 0.074 0.926 52 H 0.105 0.895 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.723 28.119 3.324 29.937 hybrid contribution -0.801 -1.328 -0.583 1.657 sum 8.922 26.791 2.741 28.370 Atomic orbital electron populations 1.22480 0.94368 1.03477 1.03510 1.22390 0.94302 0.92824 0.81500 1.21863 1.02545 0.90324 1.04293 1.22477 1.01724 1.02138 0.97469 1.86284 1.71348 1.22589 1.47166 1.18102 0.78649 0.81096 0.81674 1.90931 1.42382 1.70967 1.44014 1.46879 1.53130 1.11019 1.21727 1.22015 0.90926 0.97268 0.91202 1.21988 0.97242 0.93319 1.03864 1.21376 0.99689 0.96633 0.95402 1.21127 0.97674 0.89897 0.99884 1.21832 0.99416 1.03543 0.94322 1.20869 0.77044 0.88401 0.83120 1.90653 1.55875 1.73216 1.25972 1.46260 1.54570 1.14423 1.21399 1.21244 0.97922 0.80513 0.98614 1.19138 0.94279 0.95271 0.92866 1.21487 1.34819 0.98480 1.03505 0.92140 1.25906 0.95589 1.03151 0.94707 1.70077 1.38898 1.38789 1.08958 0.85373 0.78017 0.78925 0.78589 1.18811 1.20245 1.20221 1.21443 0.94521 0.78603 1.03258 0.91826 0.89364 0.92357 0.90912 0.88296 0.90988 0.92281 0.89428 0.91714 0.89821 0.87546 0.87428 0.90704 0.91360 0.91283 0.92690 0.90067 0.91588 0.75883 0.93241 0.93314 0.97566 0.97602 0.92561 0.89454 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 2 C 0.13 2.08 1.13 -10.79 -0.01 2.06 16 3 C -0.13 -1.26 8.85 71.98 0.64 -0.62 16 4 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 5 O -0.36 -7.08 8.53 -55.48 -0.47 -7.55 16 6 C 0.65 15.59 7.74 129.79 1.00 16.59 16 7 O -0.59 -17.87 11.29 19.79 0.22 -17.65 16 8 N -0.59 -12.02 2.41 -949.33 -2.29 -14.31 16 9 C 0.11 1.46 6.45 86.36 0.56 2.02 16 10 C -0.13 -1.61 5.74 30.67 0.18 -1.43 16 11 C -0.09 -1.85 4.00 30.62 0.12 -1.73 16 12 C -0.08 -1.97 0.62 -52.86 -0.03 -2.00 16 13 C -0.13 -2.96 7.88 71.98 0.57 -2.39 16 14 C 0.52 17.28 6.48 87.66 0.57 17.85 16 15 O -0.58 -23.13 15.98 -3.04 -0.05 -23.18 16 16 N -0.72 -25.75 5.35 -463.04 -2.48 -28.23 16 17 C 0.14 6.16 5.61 86.38 0.48 6.65 16 18 C 0.02 1.13 5.09 29.85 0.15 1.29 16 19 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.29 5.46 84.65 0.46 0.75 16 22 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 23 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.14 3.44 4.96 86.35 0.43 3.87 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 1.21 6.93 -2.39 -0.02 1.20 16 39 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.07 0.96 6.34 -2.39 -0.02 0.95 16 41 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 42 H 0.07 1.50 8.07 -2.38 -0.02 1.48 16 43 H 0.05 1.32 7.56 -2.39 -0.02 1.30 16 44 H 0.08 1.57 5.97 -2.39 -0.01 1.56 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 46 H 0.41 13.45 7.44 -92.71 -0.69 12.76 16 47 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 49 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 51 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 52 H 0.09 2.40 6.61 -2.38 -0.02 2.38 16 53 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -71.47 410.56 4.00 -67.47 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.20 Total: 25.33 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.55 Total: 7.09 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -4.48 Total: -97.82 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.30 Total: -48.37 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -71.47 4.00 -67.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495050767.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.811 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds