Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 C 1.52998 * 109.46993 * 240.00044 * 2 1 3 5 5 O 1.45194 * 109.47241 * 119.99857 * 2 1 3 6 6 C 1.34642 * 117.00116 * 60.00267 * 5 2 1 7 7 O 1.21514 * 119.99830 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00355 * 179.97438 * 6 5 2 9 9 C 1.46927 * 120.62476 * 5.08469 * 8 6 5 10 10 C 1.53199 * 108.77194 * 233.62674 * 9 8 6 11 11 C 1.53044 * 109.31174 * 305.36843 * 10 9 8 12 12 C 1.53041 * 109.53775 * 61.36578 * 11 10 9 13 13 C 1.52998 * 109.49391 * 178.68380 * 12 11 10 14 14 C 1.52996 * 109.49738 * 58.58432 * 12 11 10 15 15 C 1.46921 * 120.63295 * 185.10045 * 8 6 5 16 16 H 1.08998 * 109.58941 * 246.16055 * 15 8 6 17 17 C 1.53003 * 109.70288 * 6.51531 * 15 8 6 18 18 N 1.46494 * 109.47183 * 286.93473 * 17 15 8 19 19 C 1.34783 * 119.99934 * 185.43110 * 18 17 15 20 20 O 1.21683 * 119.99694 * 359.97438 * 19 18 17 21 21 C 1.46371 * 119.99748 * 179.97438 * 19 18 17 22 22 H 1.07998 * 120.00478 * 0.02562 * 21 19 18 23 23 C 1.40050 * 119.99995 * 179.97438 * 21 19 18 24 24 N 1.30676 * 119.99746 * 0.02562 * 23 21 19 25 25 Si 1.86799 * 120.00256 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47075 * 60.00297 * 25 23 21 27 27 H 1.48497 * 109.46900 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46960 * 300.00266 * 25 23 21 29 29 H 1.09004 * 109.46601 * 299.99606 * 1 2 3 30 30 H 1.08994 * 109.47435 * 60.00070 * 1 2 3 31 31 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47162 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47068 * 300.00162 * 3 2 1 34 34 H 1.08992 * 109.47221 * 60.00001 * 3 2 1 35 35 H 1.09001 * 109.46800 * 300.00185 * 4 2 1 36 36 H 1.09002 * 109.46861 * 59.99486 * 4 2 1 37 37 H 1.08997 * 109.47426 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.58295 * 113.84524 * 9 8 6 39 39 H 1.08994 * 109.70849 * 353.48196 * 9 8 6 40 40 H 1.08997 * 109.49420 * 185.41449 * 10 9 8 41 41 H 1.08993 * 109.49681 * 65.31978 * 10 9 8 42 42 H 1.09000 * 109.45945 * 301.34069 * 11 10 9 43 43 H 1.08996 * 109.45791 * 181.38450 * 11 10 9 44 44 H 1.09005 * 109.46800 * 179.84025 * 13 12 11 45 45 H 1.08998 * 109.46949 * 299.83277 * 13 12 11 46 46 H 1.08996 * 109.47395 * 59.83974 * 13 12 11 47 47 H 1.08992 * 109.47152 * 300.15798 * 14 12 11 48 48 H 1.08995 * 109.47030 * 60.16333 * 14 12 11 49 49 H 1.09002 * 109.46756 * 180.16074 * 14 12 11 50 50 H 1.09006 * 109.47042 * 46.93745 * 17 15 8 51 51 H 1.09003 * 109.47188 * 166.92600 * 17 15 8 52 52 H 0.96998 * 120.00121 * 5.42733 * 18 17 15 53 53 H 0.97000 * 119.99964 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0682 -2.6657 2.4166 9 6 2.8226 -2.0016 3.4883 10 6 4.1229 -2.7754 3.7284 11 6 3.7937 -4.2436 4.0081 12 6 3.0879 -4.8503 2.7932 13 6 2.7887 -6.3267 3.0612 14 6 3.9900 -4.7263 1.5638 15 6 1.7759 -4.1001 2.5426 16 1 1.0965 -4.2625 3.3793 17 6 1.1316 -4.6105 1.2522 18 7 -0.2454 -4.1182 1.1660 19 6 -1.0473 -4.5311 0.1644 20 8 -0.6271 -5.3123 -0.6686 21 6 -2.4233 -4.0396 0.0786 22 1 -2.7961 -3.3459 0.8177 23 6 -3.2563 -4.4681 -0.9624 24 7 -2.8052 -5.3071 -1.8570 25 14 -5.0123 -3.8403 -1.0723 26 1 -5.0017 -2.3616 -1.2069 27 1 -5.6794 -4.4408 -2.2553 28 1 -5.7516 -4.2201 0.1582 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 2.2285 -1.9929 4.4021 39 1 3.0555 -0.9783 3.1941 40 1 4.6463 -2.3503 4.5847 41 1 4.7558 -2.7066 2.8437 42 1 3.1407 -4.3100 4.8782 43 1 4.7155 -4.7915 4.2035 44 1 2.2834 -6.7576 2.1968 45 1 3.7224 -6.8600 3.2394 46 1 2.1471 -6.4141 3.9380 47 1 4.2037 -3.6744 1.3746 48 1 4.9233 -5.2602 1.7426 49 1 3.4857 -5.1559 0.6983 50 1 1.7006 -4.2505 0.3949 51 1 1.1285 -5.7006 1.2542 52 1 -0.5802 -3.4952 1.8298 53 1 -3.3823 -5.6041 -2.5778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496588531.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -117.353019 kcal Electronic energy + Delta-G solvation = -33744.517668 eV Core-core repulsion = 29616.466601 eV Total energy + Delta-G solvation = -4128.051067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.27190 -40.45908 -38.98858 -37.72830 -35.93723 -34.95746 -34.49612 -34.30755 -32.67975 -29.35834 -28.36463 -28.29882 -28.23523 -27.87215 -26.97711 -25.17070 -22.83798 -22.53092 -21.51430 -20.35768 -19.64839 -19.18506 -18.25226 -17.46105 -17.25622 -17.10213 -16.61786 -16.37937 -15.95273 -15.70892 -15.57985 -15.39677 -15.11600 -14.68511 -14.61389 -14.31914 -14.22972 -13.98193 -13.82265 -13.42441 -13.24355 -13.15532 -13.07559 -12.98856 -12.89269 -12.80297 -12.76655 -12.70385 -12.56759 -12.50625 -12.37529 -12.36784 -12.06091 -12.03969 -11.92816 -11.74616 -11.33581 -11.27113 -11.11081 -10.87727 -10.30873 -9.72140 -9.56819 -8.92677 -8.20654 -6.73974 1.22104 1.35403 1.40730 1.51009 2.01534 2.26147 2.59152 2.91370 3.26979 3.59060 3.79494 3.81524 3.82187 3.84008 3.88655 3.98980 4.12209 4.15099 4.19279 4.37486 4.49915 4.56859 4.60361 4.61477 4.67781 4.75118 4.76408 4.78367 4.83799 4.84944 4.86991 4.92533 4.98311 5.03145 5.07216 5.10761 5.15151 5.20564 5.25407 5.31575 5.32945 5.34873 5.41425 5.45653 5.55301 5.61036 5.69927 5.98198 6.33292 6.51654 6.53229 6.94117 7.56785 7.74273 8.63371 8.83376 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.004953 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.374968 B = 5652.112691 C = 7556.303305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.135 3.865 3 C -0.127 4.127 4 C -0.175 4.175 5 O -0.366 6.366 6 C 0.619 3.381 7 O -0.544 6.544 8 N -0.591 5.591 9 C 0.109 3.891 10 C -0.131 4.131 11 C -0.101 4.101 12 C -0.066 4.066 13 C -0.142 4.142 14 C -0.137 4.137 15 C 0.173 3.827 16 H 0.084 0.916 17 C 0.157 3.843 18 N -0.713 5.713 19 C 0.553 3.447 20 O -0.643 6.643 21 C -0.572 4.572 22 H 0.073 0.927 23 C 0.030 3.970 24 N -0.826 5.826 25 Si 0.992 3.008 26 H -0.258 1.258 27 H -0.272 1.272 28 H -0.253 1.253 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.034 0.966 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.026 0.974 50 H 0.035 0.965 51 H 0.029 0.971 52 H 0.379 0.621 53 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.308 11.778 14.476 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.099 3.901 3 C -0.184 4.184 4 C -0.233 4.233 5 O -0.281 6.281 6 C 0.373 3.627 7 O -0.430 6.430 8 N -0.333 5.333 9 C -0.012 4.012 10 C -0.169 4.169 11 C -0.138 4.138 12 C -0.068 4.068 13 C -0.200 4.200 14 C -0.194 4.194 15 C 0.070 3.930 16 H 0.102 0.898 17 C 0.032 3.968 18 N -0.365 5.365 19 C 0.356 3.644 20 O -0.531 6.531 21 C -0.609 4.609 22 H 0.091 0.909 23 C -0.184 4.184 24 N -0.456 5.456 25 Si 0.811 3.189 26 H -0.183 1.183 27 H -0.197 1.197 28 H -0.177 1.177 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.047 0.953 52 H 0.211 0.789 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.388 11.025 13.410 23.199 hybrid contribution -1.172 0.083 -0.618 1.327 sum 14.217 11.108 12.792 22.116 Atomic orbital electron populations 1.22424 0.95045 1.03298 1.02788 1.22166 0.93620 0.92856 0.81489 1.21809 1.02409 0.90029 1.04160 1.22401 1.01315 1.01666 0.97900 1.86215 1.71570 1.23731 1.46595 1.18620 0.79704 0.81055 0.83348 1.91380 1.39041 1.68570 1.44017 1.46972 1.58377 1.08472 1.19502 1.21929 0.92816 0.96957 0.89478 1.21972 0.96334 0.95430 1.03135 1.21579 1.01125 0.95461 0.95630 1.20884 0.93154 0.95574 0.97160 1.21904 1.02708 0.93859 1.01486 1.21864 0.99561 1.01420 0.96525 1.21430 0.96854 0.77964 0.96747 0.89789 1.20990 0.84459 0.95183 0.96133 1.45420 1.11268 1.49418 1.30347 1.18277 0.86363 0.80032 0.79691 1.90503 1.77735 1.41215 1.43686 1.21272 0.96738 1.29596 1.13270 0.90903 1.26895 1.04815 0.93200 0.93491 1.70221 1.37840 1.26467 1.11117 0.85176 0.75651 0.79210 0.78816 1.18265 1.19706 1.17734 0.91561 0.90575 0.92992 0.90739 0.88791 0.90664 0.93715 0.90332 0.91615 0.89924 0.89045 0.87782 0.92025 0.90342 0.89511 0.94640 0.90029 0.91314 0.93116 0.90491 0.95518 0.94715 0.95270 0.78907 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.76 8.37 71.98 0.60 -5.16 16 2 C 0.14 3.85 1.13 -10.79 -0.01 3.83 16 3 C -0.13 -2.38 8.85 71.98 0.64 -1.74 16 4 C -0.18 -5.56 8.37 71.98 0.60 -4.96 16 5 O -0.37 -10.98 8.53 -55.51 -0.47 -11.46 16 6 C 0.62 21.61 7.35 129.79 0.95 22.57 16 7 O -0.54 -24.38 5.60 19.80 0.11 -24.27 16 8 N -0.59 -16.46 2.41 -925.21 -2.23 -18.69 16 9 C 0.11 2.00 6.45 86.36 0.56 2.56 16 10 C -0.13 -1.80 5.74 30.68 0.18 -1.63 16 11 C -0.10 -1.46 4.71 30.62 0.14 -1.32 16 12 C -0.07 -1.50 0.55 -52.10 -0.03 -1.53 16 13 C -0.14 -3.15 8.27 71.98 0.60 -2.56 16 14 C -0.14 -3.46 7.52 71.98 0.54 -2.92 16 15 C 0.17 5.14 2.07 44.98 0.09 5.23 16 16 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 17 C 0.16 6.85 3.32 86.38 0.29 7.13 16 18 N -0.71 -36.24 3.17 -467.40 -1.48 -37.72 16 19 C 0.55 35.34 7.47 86.36 0.65 35.99 16 20 O -0.64 -47.09 15.01 -4.30 -0.06 -47.16 16 21 C -0.57 -35.51 9.54 24.83 0.24 -35.27 16 22 H 0.07 4.16 7.85 -2.91 -0.02 4.14 16 23 C 0.03 1.80 5.50 85.30 0.47 2.27 16 24 N -0.83 -54.36 11.83 21.84 0.26 -54.10 16 25 Si 0.99 44.33 29.56 68.60 2.03 46.36 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 28 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 2.24 5.88 -2.39 -0.01 2.23 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.89 5.88 -2.39 -0.01 1.88 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 39 H 0.09 1.65 6.93 -2.39 -0.02 1.63 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.00 6.33 -2.39 -0.02 0.99 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.03 1.02 6.37 -2.38 -0.02 1.00 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.33 5.97 -2.39 -0.01 1.31 16 48 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.03 0.86 6.65 -2.39 -0.02 0.84 16 50 H 0.03 1.75 5.36 -2.38 -0.01 1.74 16 51 H 0.03 1.39 6.12 -2.39 -0.01 1.37 16 52 H 0.38 17.79 8.00 -92.71 -0.74 17.05 16 53 H 0.27 16.15 8.29 -92.71 -0.77 15.38 16 Total: -1.00 -88.18 394.41 4.81 -83.36 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: 0.16 Total: 41.18 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 6.50 Total: 22.49 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -3.45 Total: -110.51 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -0.43 Total: -82.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -88.18 4.81 -83.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496588531.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.991 kcal (2) G-P(sol) polarization free energy of solvation -88.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds