Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53001 * 114.39140 * 272.67779 * 10 9 8 12 12 C 1.50694 * 114.08810 * 139.78360 * 10 9 8 13 13 O 1.21285 * 119.99490 * 266.55796 * 12 10 9 14 14 N 1.34772 * 120.00424 * 86.55827 * 12 10 9 15 15 C 1.46501 * 120.00093 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.46958 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46965 * 299.99811 * 16 15 14 18 18 C 1.53001 * 109.47003 * 59.99898 * 16 15 14 19 19 C 1.50697 * 109.46875 * 180.02562 * 16 15 14 20 20 H 1.08004 * 120.00088 * 359.97438 * 19 16 15 21 21 C 1.37880 * 119.99943 * 180.02562 * 19 16 15 22 22 N 1.31519 * 119.99863 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99908 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47148 * 59.99718 * 23 21 19 25 25 H 1.48506 * 109.46752 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47259 * 299.99215 * 23 21 19 27 27 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 35 35 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 37 37 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 38 38 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 39 39 H 1.09003 * 109.47262 * 153.58364 * 11 10 9 40 40 H 1.09003 * 109.46944 * 273.58550 * 11 10 9 41 41 H 1.08996 * 109.47358 * 33.58556 * 11 10 9 42 42 H 0.96999 * 119.99845 * 359.97438 * 14 12 10 43 43 H 1.08993 * 109.47128 * 299.99738 * 15 14 12 44 44 H 1.08993 * 109.47130 * 60.00248 * 15 14 12 45 45 H 1.09004 * 109.47021 * 60.00270 * 17 16 15 46 46 H 1.08998 * 109.46980 * 180.02562 * 17 16 15 47 47 H 1.08997 * 109.47211 * 300.00466 * 17 16 15 48 48 H 1.09001 * 109.47273 * 60.00465 * 18 16 15 49 49 H 1.08999 * 109.46445 * 179.97438 * 18 16 15 50 50 H 1.08998 * 109.46975 * 299.99798 * 18 16 15 51 51 H 0.96997 * 119.99779 * 180.02562 * 22 21 19 52 52 H 1.08998 * 113.46755 * 321.86921 * 27 8 6 53 53 H 1.09004 * 113.46677 * 92.30306 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8250 -2.8530 -5.0847 12 6 2.9478 -2.3552 -6.3848 13 8 3.3941 -1.4660 -7.0785 14 7 3.2054 -3.6422 -6.6906 15 6 4.0249 -3.9673 -7.8606 16 6 4.1621 -5.4864 -7.9810 17 6 4.8303 -6.0396 -6.7207 18 6 2.7752 -6.1127 -8.1399 19 6 5.0057 -5.8208 -9.1842 20 1 5.4038 -5.0290 -9.8015 21 6 5.2684 -7.1375 -9.4975 22 7 4.7832 -8.1017 -8.7461 23 14 6.3135 -7.5520 -10.9893 24 1 7.6597 -6.9445 -10.8349 25 1 6.4467 -9.0264 -11.1061 26 1 5.6652 -7.0147 -12.2126 27 6 1.8960 -0.5168 -4.9572 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2493 36 1 1.6767 -0.2075 2.1392 37 1 3.9504 -1.6754 -4.0134 38 1 2.7529 -2.7752 -3.2054 39 1 0.1135 -2.5136 -5.8375 40 1 1.0609 -3.9035 -5.2552 41 1 0.3887 -2.7350 -4.0929 42 1 2.8487 -4.3533 -6.1356 43 1 3.5487 -3.5736 -8.7585 44 1 5.0128 -3.5208 -7.7476 45 1 4.2205 -5.7978 -5.8501 46 1 4.9284 -7.1218 -6.8066 47 1 5.8182 -5.5934 -6.6075 48 1 2.2992 -5.7186 -9.0378 49 1 2.8731 -7.1949 -8.2261 50 1 2.1655 -5.8708 -7.2693 51 1 4.9683 -9.0280 -8.9663 52 1 0.8962 -0.1734 -5.2231 53 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496880249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -102.977692 kcal Electronic energy + Delta-G solvation = -30935.270132 eV Core-core repulsion = 26807.842425 eV Total energy + Delta-G solvation = -4127.427706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40588 -41.32955 -39.67197 -38.03630 -37.60130 -35.11549 -35.01763 -33.10485 -32.08652 -28.39342 -28.36068 -28.28983 -27.54013 -27.50077 -27.27380 -26.83153 -24.23696 -22.52639 -20.75560 -20.56354 -20.00750 -19.05446 -18.31868 -17.75859 -17.73858 -17.11974 -16.77325 -16.53690 -16.51375 -15.98340 -15.63847 -15.22778 -15.14050 -14.75786 -14.70637 -14.46854 -14.22257 -14.11283 -13.87899 -13.51024 -13.33914 -13.18750 -13.13480 -13.03941 -12.94107 -12.88117 -12.86909 -12.80109 -12.63021 -12.60456 -12.45676 -12.29721 -12.20193 -12.10473 -11.67719 -11.43074 -11.41100 -11.25827 -11.18322 -10.77977 -10.63549 -10.36017 -9.99100 -9.91050 -7.99211 -6.14197 0.82219 1.45573 1.47520 1.53196 1.54604 1.66019 2.28620 2.50649 2.66774 3.02594 3.24616 3.54558 3.75010 3.79434 3.83193 3.85387 3.94672 4.07519 4.37115 4.41284 4.47696 4.51762 4.57364 4.60526 4.62383 4.74452 4.75888 4.77075 4.79581 4.81474 4.84629 4.88432 4.90475 5.05530 5.11650 5.13342 5.16130 5.21907 5.25804 5.28152 5.32891 5.40554 5.44283 5.62193 5.71288 5.72944 6.21498 6.26928 6.47729 6.49627 6.66174 6.90221 7.15567 7.28281 7.53289 8.99070 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.002092 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.141450 B =13381.342497 C =13747.116459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.180 4.180 4 C -0.135 4.135 5 O -0.364 6.364 6 C 0.680 3.320 7 O -0.591 6.591 8 N -0.634 5.634 9 C 0.128 3.872 10 C -0.112 4.112 11 C -0.120 4.120 12 C 0.530 3.470 13 O -0.582 6.582 14 N -0.700 5.700 15 C 0.147 3.853 16 C 0.051 3.949 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.527 4.527 20 H 0.044 0.956 21 C 0.029 3.971 22 N -0.898 5.898 23 Si 0.941 3.059 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.278 1.278 27 C 0.151 3.849 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.410 0.590 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.060 0.940 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.060 0.940 50 H 0.040 0.960 51 H 0.259 0.741 52 H 0.093 0.907 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 10.925 19.942 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.237 4.237 4 C -0.192 4.192 5 O -0.279 6.279 6 C 0.437 3.563 7 O -0.482 6.482 8 N -0.376 5.376 9 C 0.005 3.995 10 C -0.116 4.116 11 C -0.177 4.177 12 C 0.316 3.684 13 O -0.462 6.462 14 N -0.351 5.351 15 C 0.023 3.977 16 C 0.050 3.950 17 C -0.180 4.180 18 C -0.180 4.180 19 C -0.565 4.565 20 H 0.062 0.938 21 C -0.171 4.171 22 N -0.536 5.536 23 Si 0.768 3.232 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.204 1.204 27 C 0.029 3.971 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.248 0.752 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.112 0.888 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.641 11.737 19.752 24.548 hybrid contribution 0.704 -0.426 -1.104 1.377 sum -7.937 11.311 18.649 23.210 Atomic orbital electron populations 1.22470 0.93687 1.03085 1.04324 1.22494 0.94861 0.92597 0.81424 1.22477 1.01543 0.95382 1.04315 1.21884 1.02352 1.01308 0.93645 1.86332 1.71380 1.56730 1.13460 1.17326 0.78531 0.80094 0.80363 1.90897 1.42961 1.27458 1.86862 1.48056 1.53150 1.32543 1.03864 1.23164 0.95380 0.88880 0.92070 1.22369 0.98346 0.97784 0.93126 1.21562 0.92979 0.99401 1.03786 1.20249 0.80176 0.82563 0.85437 1.90689 1.54255 1.47943 1.53308 1.46094 1.52111 1.07308 1.29623 1.21306 0.92814 0.97383 0.86212 1.18361 0.93851 0.88459 0.94320 1.21682 0.97694 1.02777 0.95819 1.21680 0.95849 1.02810 0.97619 1.21252 1.32025 0.91952 1.11308 0.93764 1.25418 0.96730 0.96467 0.98520 1.69895 1.45380 0.99500 1.38862 0.85884 0.79592 0.76819 0.80879 1.20359 1.21028 1.20380 1.22930 1.04034 0.94779 0.75310 0.92108 0.91768 0.88902 0.88771 0.92176 0.92223 0.91082 0.91404 0.87740 0.88825 0.86760 0.90717 0.89991 0.90428 0.75167 0.94105 0.94004 0.94061 0.92073 0.96246 0.96335 0.92066 0.94075 0.93114 0.88843 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 2 C 0.12 2.11 1.13 -10.79 -0.01 2.10 16 3 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 4 C -0.13 -1.47 8.85 71.98 0.64 -0.83 16 5 O -0.36 -8.21 9.91 -55.38 -0.55 -8.76 16 6 C 0.68 17.64 8.26 129.79 1.07 18.71 16 7 O -0.59 -17.90 12.66 19.80 0.25 -17.65 16 8 N -0.63 -14.61 3.49 -988.20 -3.45 -18.06 16 9 C 0.13 2.45 7.76 83.27 0.65 3.10 16 10 C -0.11 -2.36 1.41 -52.51 -0.07 -2.43 16 11 C -0.12 -1.99 9.17 71.98 0.66 -1.33 16 12 C 0.53 15.42 7.00 87.66 0.61 16.04 16 13 O -0.58 -21.68 15.95 -3.04 -0.05 -21.73 16 14 N -0.70 -21.02 4.84 -463.07 -2.24 -23.26 16 15 C 0.15 5.73 4.50 86.38 0.39 6.12 16 16 C 0.05 2.20 0.50 -52.93 -0.03 2.17 16 17 C -0.12 -5.04 8.08 71.98 0.58 -4.46 16 18 C -0.12 -5.06 8.08 71.98 0.58 -4.47 16 19 C -0.53 -26.79 8.01 25.60 0.21 -26.58 16 20 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 21 C 0.03 1.46 5.15 84.65 0.44 1.89 16 22 N -0.90 -46.47 9.35 21.45 0.20 -46.27 16 23 Si 0.94 41.68 29.54 68.60 2.03 43.71 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 27 C 0.15 3.46 7.55 83.17 0.63 4.09 16 28 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 38 H 0.11 1.71 8.12 -2.39 -0.02 1.69 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.21 6.92 -2.39 -0.02 1.20 16 41 H 0.08 1.19 7.93 -2.39 -0.02 1.17 16 42 H 0.41 10.45 4.97 -92.71 -0.46 9.99 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 46 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 2.88 6.07 -2.39 -0.01 2.87 16 50 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 51 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 52 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 53 H 0.09 2.36 7.45 -2.39 -0.02 2.35 16 Total: -1.00 -63.45 412.25 4.17 -59.29 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.43 Total: 23.48 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.54 Total: 9.26 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -5.49 Total: -87.59 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -0.35 Total: -48.14 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -63.45 4.17 -59.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496880249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.689 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds