Wall clock time and date at job start Sat Apr 11 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47102 * 2 1 4 4 C 1.53003 * 109.46876 * 239.99991 * 2 1 3 5 5 O 1.45202 * 109.47307 * 120.00015 * 2 1 3 6 6 C 1.34645 * 116.99591 * 60.00003 * 5 2 1 7 7 O 1.21504 * 120.00207 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99639 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99990 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47018 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47147 * 300.00093 * 9 8 6 12 12 C 1.53001 * 109.47367 * 294.99987 * 11 9 8 13 13 C 1.50697 * 109.46995 * 180.02562 * 12 11 9 14 14 H 1.07991 * 120.00449 * 359.72153 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48490 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 120.00108 * 17 15 13 20 20 H 1.48504 * 109.46636 * 239.99667 * 17 15 13 21 21 C 1.50698 * 109.47051 * 60.00117 * 9 8 6 22 22 O 1.21285 * 119.99943 * 340.00267 * 21 9 8 23 23 N 1.34776 * 120.00140 * 160.00004 * 21 9 8 24 24 C 1.46501 * 119.99878 * 180.02562 * 23 21 9 25 25 H 1.08997 * 115.55416 * 350.58289 * 24 23 21 26 26 C 1.53004 * 117.49788 * 136.25216 * 24 23 21 27 27 C 1.53001 * 117.49606 * 204.91050 * 24 23 21 28 28 C 1.53003 * 117.50120 * 0.02562 * 27 24 23 29 29 C 1.53006 * 117.49597 * 145.01819 * 27 24 23 30 30 H 1.08997 * 109.46717 * 299.99803 * 1 2 3 31 31 H 1.08994 * 109.47397 * 59.99854 * 1 2 3 32 32 H 1.08999 * 109.46895 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47090 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47210 * 299.99850 * 3 2 1 35 35 H 1.08997 * 109.47173 * 60.00477 * 3 2 1 36 36 H 1.08999 * 109.47277 * 299.99666 * 4 2 1 37 37 H 1.08994 * 109.46981 * 59.99899 * 4 2 1 38 38 H 1.09000 * 109.46959 * 179.97438 * 4 2 1 39 39 H 0.97005 * 120.00163 * 359.97438 * 8 6 5 40 40 H 1.08998 * 109.47353 * 174.99766 * 11 9 8 41 41 H 1.09006 * 109.47395 * 55.00021 * 11 9 8 42 42 H 1.08998 * 109.47065 * 59.99602 * 12 11 9 43 43 H 1.09001 * 109.46892 * 299.99866 * 12 11 9 44 44 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 45 45 H 0.96997 * 120.00138 * 359.97438 * 23 21 9 46 46 H 1.08999 * 117.49675 * 214.97718 * 26 24 23 47 47 H 1.08994 * 117.49880 * 359.97438 * 26 24 23 48 48 H 1.08995 * 109.46836 * 59.99473 * 28 27 24 49 49 H 1.08998 * 109.47024 * 179.97438 * 28 27 24 50 50 H 1.09002 * 109.46745 * 299.99764 * 28 27 24 51 51 H 1.09001 * 109.46737 * 60.00431 * 29 27 24 52 52 H 1.09006 * 109.47041 * 179.97438 * 29 27 24 53 53 H 1.08992 * 109.47365 * 300.00096 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6740 -4.0670 2.5831 10 1 2.1024 -4.4576 3.5061 11 6 0.1485 -4.1635 2.6473 12 6 -0.3553 -3.4494 3.9032 13 6 -1.8579 -3.5450 3.9667 14 1 -2.3998 -4.0594 3.1869 15 6 -2.5414 -2.9713 5.0179 16 7 -1.8815 -2.3453 5.9678 17 14 -4.4045 -3.0832 5.0927 18 1 -4.9031 -3.8334 3.9122 19 1 -4.8085 -3.7890 6.3351 20 1 -4.9830 -1.7155 5.0900 21 6 2.1796 -4.8732 1.4146 22 8 2.4760 -4.3181 0.3777 23 7 2.3024 -6.2111 1.5217 24 6 2.7944 -6.9948 0.3859 25 1 2.8875 -6.4520 -0.5547 26 6 3.8248 -8.0882 0.6755 27 6 2.3865 -8.4676 0.3143 28 6 1.4954 -9.0092 1.4340 29 6 2.1407 -9.0660 -1.0723 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 2.6283 -2.2371 3.0824 40 1 -0.1482 -5.2117 2.6818 41 1 -0.2830 -3.6927 1.7639 42 1 -0.0587 -2.4011 3.8687 43 1 0.0760 -3.9202 4.7866 44 1 -2.3623 -1.9420 6.7075 45 1 2.0657 -6.6550 2.3510 46 1 4.5954 -8.2649 -0.0748 47 1 4.1368 -8.2241 1.7110 48 1 0.5591 -8.4516 1.4550 49 1 1.2861 -10.0636 1.2539 50 1 2.0060 -8.8980 2.3906 51 1 3.0509 -8.9900 -1.6672 52 1 1.8598 -10.1144 -0.9710 53 1 1.3370 -8.5202 -1.5663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497080424.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:38 Heat of formation + Delta-G solvation = -129.972477 kcal Electronic energy + Delta-G solvation = -31761.245722 eV Core-core repulsion = 27632.647433 eV Total energy + Delta-G solvation = -4128.598288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.95357 -40.86603 -39.33456 -37.99286 -36.44896 -35.28783 -34.76480 -34.33348 -32.63309 -30.07807 -28.97626 -28.34102 -28.32456 -28.25026 -26.02702 -24.01874 -23.09904 -22.11792 -21.46229 -20.77631 -20.08713 -19.43227 -18.61116 -17.89611 -17.56057 -17.13455 -16.82705 -16.51384 -16.26766 -15.80538 -15.50182 -15.37734 -15.11703 -15.00424 -14.66977 -14.58988 -14.36477 -14.05416 -13.88703 -13.66499 -13.45546 -13.26974 -13.12078 -13.10035 -12.89868 -12.82968 -12.82291 -12.70047 -12.63639 -12.53231 -12.40571 -12.23323 -12.07422 -11.97002 -11.81537 -11.64502 -11.26812 -11.24207 -11.12570 -10.71326 -10.69627 -10.49111 -9.92358 -9.57774 -8.18953 -6.27505 1.23637 1.37475 1.39342 1.51219 1.61361 1.91358 2.27177 2.41493 2.86219 3.14855 3.28526 3.65863 3.75419 3.81963 3.85073 3.89467 3.93542 3.99197 4.00818 4.17247 4.20421 4.56313 4.61658 4.63180 4.67035 4.77544 4.78359 4.79265 4.85045 4.87960 4.91051 4.91305 4.96107 5.03555 5.05091 5.08202 5.11533 5.19183 5.28950 5.29357 5.35057 5.41988 5.48132 5.52244 5.56937 5.66151 5.78473 5.87359 6.27772 6.52572 6.56022 6.87174 7.26837 7.40488 7.61050 8.92180 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006457 B = 0.004561 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4335.571663 B = 6137.617274 C = 9521.824893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.132 4.132 4 C -0.171 4.171 5 O -0.377 6.377 6 C 0.651 3.349 7 O -0.563 6.563 8 N -0.692 5.692 9 C 0.159 3.841 10 H 0.146 0.854 11 C -0.108 4.108 12 C 0.040 3.960 13 C -0.540 4.540 14 H 0.048 0.952 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.953 3.047 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.281 1.281 21 C 0.508 3.492 22 O -0.548 6.548 23 N -0.689 5.689 24 C 0.064 3.936 25 H 0.108 0.892 26 C -0.165 4.165 27 C -0.131 4.131 28 C -0.121 4.121 29 C -0.116 4.116 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.417 0.583 40 H 0.073 0.927 41 H 0.050 0.950 42 H -0.007 1.007 43 H 0.010 0.990 44 H 0.263 0.737 45 H 0.413 0.587 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.051 0.949 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.076 0.924 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.057 -6.529 -10.284 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.189 4.189 4 C -0.228 4.228 5 O -0.293 6.293 6 C 0.404 3.596 7 O -0.451 6.451 8 N -0.351 5.351 9 C 0.051 3.949 10 H 0.164 0.836 11 C -0.146 4.146 12 C 0.003 3.997 13 C -0.578 4.578 14 H 0.066 0.934 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.207 1.207 21 C 0.293 3.707 22 O -0.424 6.424 23 N -0.341 5.341 24 C -0.043 4.043 25 H 0.126 0.874 26 C -0.204 4.204 27 C -0.132 4.132 28 C -0.178 4.178 29 C -0.173 4.173 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.011 0.989 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.250 0.750 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.095 0.905 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.883 -6.203 -11.347 18.254 hybrid contribution -1.072 0.155 0.873 1.391 sum 11.811 -6.049 -10.474 16.906 Atomic orbital electron populations 1.22447 0.94884 1.03271 1.02990 1.22334 0.93923 0.92923 0.81764 1.21860 1.02450 0.90407 1.04178 1.22373 1.01210 1.02059 0.97145 1.86247 1.71949 1.23586 1.47487 1.18104 0.78788 0.80437 0.82222 1.90851 1.40681 1.70148 1.43384 1.44149 1.55875 1.11217 1.23880 1.21001 0.96950 0.79471 0.97490 0.83614 1.21807 0.91347 1.01384 1.00105 1.18864 0.94423 0.94456 0.91957 1.21620 0.93908 1.34935 1.07328 0.93365 1.25779 1.02946 0.94857 0.95377 1.70062 1.37135 1.37286 1.12052 0.85577 0.80395 0.77887 0.78294 1.19342 1.19779 1.20736 1.21098 0.76938 0.82961 0.89693 1.90693 1.49562 1.71197 1.30980 1.45188 1.66601 1.05780 1.16517 1.21706 1.03644 0.87666 0.91238 0.87428 1.23820 0.92152 1.00492 1.03906 1.22158 0.97461 0.95058 0.98515 1.21380 0.98431 1.01609 0.96401 1.21385 1.01896 1.01054 0.92943 0.93035 0.88835 0.92730 0.90862 0.87733 0.91636 0.92500 0.89162 0.92267 0.74615 0.90886 0.93120 0.98861 0.97161 0.92820 0.75039 0.87129 0.87267 0.93037 0.90477 0.91248 0.91623 0.90463 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 8.37 71.98 0.60 -5.23 16 2 C 0.13 3.87 1.13 -10.79 -0.01 3.86 16 3 C -0.13 -2.86 8.85 71.98 0.64 -2.22 16 4 C -0.17 -5.06 8.37 71.98 0.60 -4.45 16 5 O -0.38 -13.75 9.94 -55.54 -0.55 -14.31 16 6 C 0.65 26.30 6.81 129.79 0.88 27.19 16 7 O -0.56 -25.48 7.73 27.31 0.21 -25.27 16 8 N -0.69 -24.40 4.66 -573.73 -2.67 -27.08 16 9 C 0.16 5.30 3.01 44.24 0.13 5.43 16 10 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 11 C -0.11 -4.50 4.48 30.59 0.14 -4.36 16 12 C 0.04 2.03 4.86 29.85 0.15 2.18 16 13 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 14 H 0.05 2.74 7.74 -2.92 -0.02 2.72 16 15 C 0.01 0.50 5.46 84.66 0.46 0.96 16 16 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 17 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 C 0.51 16.98 6.82 87.66 0.60 17.58 16 22 O -0.55 -22.61 13.24 19.42 0.26 -22.35 16 23 N -0.69 -17.51 5.34 -442.52 -2.36 -19.88 16 24 C 0.06 1.49 6.12 44.99 0.28 1.77 16 25 H 0.11 3.12 7.40 -2.39 -0.02 3.10 16 26 C -0.17 -2.72 9.75 30.62 0.30 -2.42 16 27 C -0.13 -2.34 2.70 -52.15 -0.14 -2.48 16 28 C -0.12 -1.97 8.85 71.98 0.64 -1.33 16 29 C -0.12 -1.85 9.85 71.98 0.71 -1.15 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.20 5.88 -2.39 -0.01 2.19 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 2.15 5.88 -2.39 -0.01 2.14 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.42 12.35 8.94 -92.70 -0.83 11.52 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.05 2.48 6.04 -2.38 -0.01 2.46 16 42 H -0.01 -0.39 7.75 -2.39 -0.02 -0.41 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.41 8.38 7.69 -92.71 -0.71 7.67 16 46 H 0.11 1.58 8.05 -2.39 -0.02 1.56 16 47 H 0.11 1.55 8.05 -2.39 -0.02 1.53 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.05 7.92 -2.39 -0.02 1.03 16 50 H 0.07 0.96 7.61 -2.39 -0.02 0.94 16 51 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 52 H 0.08 1.00 7.92 -2.38 -0.02 0.98 16 53 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -76.72 420.42 2.75 -73.97 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.64 Total: 38.13 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.20 Total: 4.80 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -4.75 Total: -101.58 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -0.08 Total: -61.92 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -76.72 2.75 -73.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497080424.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.006 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds