Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48500 * 109.46904 * 269.99665 * 3 2 1 5 5 H 1.48498 * 109.47281 * 29.99846 * 3 2 1 6 6 H 1.48500 * 109.46927 * 149.99753 * 3 2 1 7 7 C 1.37869 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00351 * 0.02562 * 7 2 1 10 10 C 1.53041 * 109.46272 * 179.97438 * 9 7 2 11 11 C 1.53198 * 109.31287 * 181.38493 * 10 9 7 12 12 N 1.46931 * 108.77246 * 305.36602 * 11 10 9 13 13 C 1.34779 * 120.62350 * 233.58700 * 12 11 10 14 14 O 1.21586 * 120.00204 * 5.21766 * 13 12 11 15 15 N 1.34777 * 119.99569 * 185.22420 * 13 12 11 16 16 C 1.46496 * 119.99937 * 175.01471 * 15 13 12 17 17 C 1.52998 * 109.47172 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47425 * 179.97438 * 17 16 15 19 19 O 1.42895 * 109.47261 * 179.97438 * 18 17 16 20 20 C 1.42904 * 113.99926 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.47000 * 180.02562 * 20 19 18 22 22 H 1.08996 * 109.87209 * 53.98701 * 21 20 19 23 23 C 1.54100 * 109.87820 * 174.99767 * 21 20 19 24 24 C 1.54811 * 104.18795 * 121.44914 * 23 21 20 25 25 C 1.54994 * 102.09130 * 20.88126 * 24 23 21 26 26 O 1.43749 * 109.87559 * 292.82523 * 21 20 19 27 27 C 1.46918 * 118.74112 * 53.85973 * 12 11 10 28 28 C 1.53048 * 109.45762 * 300.06616 * 9 7 2 29 29 H 0.97001 * 119.99460 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.45217 * 60.03043 * 9 7 2 31 31 H 1.09000 * 109.49873 * 61.43222 * 10 9 7 32 32 H 1.09006 * 109.49779 * 301.33400 * 10 9 7 33 33 H 1.09000 * 109.58514 * 185.57854 * 11 10 9 34 34 H 1.09001 * 109.58575 * 65.15098 * 11 10 9 35 35 H 0.96999 * 119.99864 * 355.01152 * 15 13 12 36 36 H 1.08995 * 109.47484 * 59.99463 * 16 15 13 37 37 H 1.09002 * 109.47029 * 299.99313 * 16 15 13 38 38 H 1.09005 * 109.47661 * 59.99716 * 17 16 15 39 39 H 1.08999 * 109.47422 * 299.99886 * 17 16 15 40 40 H 1.09005 * 109.46640 * 60.00314 * 18 17 16 41 41 H 1.08999 * 109.47172 * 300.00583 * 18 17 16 42 42 H 1.08999 * 109.47180 * 60.00271 * 20 19 18 43 43 H 1.08999 * 109.46993 * 299.99758 * 20 19 18 44 44 H 1.08992 * 110.48658 * 240.13008 * 23 21 20 45 45 H 1.08998 * 110.48496 * 2.77508 * 23 21 20 46 46 H 1.08999 * 110.90486 * 139.07942 * 24 23 21 47 47 H 1.09001 * 110.90818 * 262.68478 * 24 23 21 48 48 H 1.09004 * 110.61851 * 81.47455 * 25 24 23 49 49 H 1.09004 * 110.61716 * 204.31527 * 25 24 23 50 50 H 1.09001 * 109.58527 * 65.92488 * 27 12 11 51 51 H 1.08998 * 109.58663 * 186.35323 * 27 12 11 52 52 H 1.08997 * 109.49515 * 298.56299 * 28 9 7 53 53 H 1.08990 * 109.49654 * 58.66018 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2458 -3.6621 0.0005 11 6 1.4767 -4.9866 -0.0344 12 7 0.5223 -5.0088 1.0825 13 6 0.5115 -6.0351 1.9561 14 8 1.3565 -6.9061 1.8812 15 7 -0.4361 -6.0959 2.9125 16 6 -0.5149 -7.2645 3.7924 17 6 -1.6682 -7.0818 4.7809 18 6 -1.7510 -8.3027 5.6995 19 8 -2.8278 -8.1317 6.6231 20 6 -2.9924 -9.2221 7.5321 21 6 -4.1675 -8.9325 8.4683 22 1 -5.0584 -8.7020 7.8842 23 6 -4.4331 -10.1543 9.3691 24 6 -4.2781 -9.6053 10.8083 25 6 -4.4842 -8.0835 10.5993 26 8 -3.8451 -7.8282 9.3302 27 6 -0.4240 -3.8941 1.2253 28 6 0.3696 -2.5789 1.2491 29 1 -0.4849 0.8401 -0.0004 30 1 0.6253 -2.5570 -0.8900 31 1 2.8557 -3.6193 0.9029 32 1 2.8884 -3.5913 -0.8772 33 1 2.1752 -5.8175 0.0652 34 1 0.9373 -5.0711 -0.9778 35 1 -1.0659 -5.3658 3.0183 36 1 0.4207 -7.3697 4.3415 37 1 -0.6873 -8.1590 3.1937 38 1 -2.6041 -6.9765 4.2321 39 1 -1.4955 -6.1874 5.3795 40 1 -0.8152 -8.4083 6.2484 41 1 -1.9239 -9.1969 5.1006 42 1 -2.0823 -9.3467 8.1188 43 1 -3.1914 -10.1355 6.9716 44 1 -5.4432 -10.5320 9.2115 45 1 -3.6982 -10.9362 9.1779 46 1 -5.0451 -10.0151 11.4656 47 1 -3.2818 -9.8129 11.1987 48 1 -5.5463 -7.8432 10.5495 49 1 -4.0009 -7.5177 11.3959 50 1 -1.1152 -3.8913 0.3826 51 1 -0.9800 -4.0038 2.1564 52 1 0.9968 -2.5460 2.1399 53 1 -0.3228 -1.7373 1.2599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542891355.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -152.426884 kcal Electronic energy + Delta-G solvation = -29208.599454 eV Core-core repulsion = 25079.027470 eV Total energy + Delta-G solvation = -4129.571984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37031 -40.51072 -38.90438 -38.48576 -36.45207 -35.33079 -33.59354 -33.12604 -32.45675 -31.62302 -31.06686 -28.11261 -26.77182 -25.66457 -24.53041 -23.87086 -23.03211 -22.72822 -21.85861 -21.70007 -20.32708 -19.12013 -18.26776 -17.99712 -17.54017 -17.36006 -16.96693 -16.73635 -16.65523 -16.48150 -16.13089 -15.48052 -15.23001 -15.07648 -14.89591 -14.76263 -14.52377 -14.48015 -14.26410 -14.01113 -13.32519 -13.25351 -13.17332 -13.13416 -12.90361 -12.81103 -12.62548 -12.44399 -12.20800 -12.20437 -12.14484 -12.11631 -11.96565 -11.93928 -11.56108 -11.48262 -11.24096 -10.98224 -10.77460 -10.65276 -10.58283 -10.38958 -10.20556 -9.37883 -8.06997 -6.19933 1.41574 1.43665 1.52523 1.67665 2.13460 2.44838 2.56342 2.93005 3.01345 3.19508 3.62423 3.81794 3.95859 3.96889 4.03699 4.07916 4.13693 4.20996 4.24712 4.33538 4.37191 4.42139 4.47473 4.48883 4.51479 4.52697 4.59902 4.62799 4.67569 4.70391 4.80507 4.89606 4.91155 4.96211 4.99764 5.05792 5.10561 5.11217 5.18792 5.22392 5.24654 5.44463 5.49759 5.53165 5.66704 5.96160 5.99936 6.06095 6.14470 6.25669 6.40960 6.89233 6.96806 7.47609 7.55113 8.96255 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.001633 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.203443 B =17146.686895 C =18500.661909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.135 3.865 12 N -0.623 5.623 13 C 0.703 3.297 14 O -0.636 6.636 15 N -0.739 5.739 16 C 0.145 3.855 17 C -0.119 4.119 18 C 0.067 3.933 19 O -0.406 6.406 20 C 0.060 3.940 21 C 0.070 3.930 22 H 0.070 0.930 23 C -0.145 4.145 24 C -0.151 4.151 25 C 0.033 3.967 26 O -0.400 6.400 27 C 0.121 3.879 28 C -0.114 4.114 29 H 0.261 0.739 30 H 0.006 0.994 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.407 0.593 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.024 0.976 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.501 -21.708 18.844 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.152 4.152 11 C 0.012 3.988 12 N -0.359 5.359 13 C 0.404 3.596 14 O -0.519 6.519 15 N -0.398 5.398 16 C 0.021 3.979 17 C -0.157 4.157 18 C -0.010 4.010 19 O -0.325 6.325 20 C -0.016 4.016 21 C 0.012 3.988 22 H 0.088 0.912 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.043 4.043 26 O -0.320 6.320 27 C -0.002 4.002 28 C -0.153 4.153 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.088 0.912 51 H 0.107 0.893 52 H 0.043 0.957 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.055 -21.879 18.734 31.225 hybrid contribution 0.366 1.367 -0.068 1.416 sum -11.689 -20.512 18.666 30.097 Atomic orbital electron populations 1.69943 1.06740 1.27097 1.51255 1.25617 0.95711 1.01868 0.94869 0.85711 0.78702 0.80004 0.78132 1.20235 1.20794 1.19972 1.21557 0.92898 0.92337 1.50546 0.93568 1.18601 0.93062 0.91883 0.93735 1.21874 0.98325 0.94543 1.00501 1.21475 0.91398 0.98074 0.87850 1.47416 1.38110 1.21298 1.29043 1.15972 0.81865 0.81908 0.79840 1.90823 1.41715 1.42620 1.76751 1.45191 1.35062 1.24121 1.35404 1.21013 0.98478 0.87392 0.90978 1.21538 0.98491 0.99073 0.96616 1.22350 0.89798 0.97916 0.90902 1.87883 1.52665 1.44166 1.47833 1.22896 0.98131 0.89787 0.90830 1.22921 0.96797 0.87336 0.91696 0.91230 1.22951 1.04403 0.96963 0.93924 1.23145 1.03833 0.94820 0.97063 1.23785 0.98158 0.96657 0.85749 1.88969 1.73985 1.44298 1.24717 1.21859 0.90945 0.85581 1.01804 1.21859 0.99319 0.96105 0.98013 0.92929 0.97589 0.94321 0.91649 0.90175 0.91064 0.75480 0.92340 0.91393 0.89811 0.90810 0.92564 0.91362 0.92591 0.89818 0.88601 0.88988 0.88113 0.90392 0.91500 0.88465 0.91245 0.89309 0.95697 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.36 11.30 21.45 0.24 -50.11 16 2 C 0.02 0.99 5.30 84.65 0.45 1.44 16 3 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -29.16 8.56 25.60 0.22 -28.94 16 8 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 9 C 0.05 2.22 2.06 -11.51 -0.02 2.19 16 10 C -0.11 -4.79 5.30 30.67 0.16 -4.63 16 11 C 0.14 5.00 6.44 86.36 0.56 5.56 16 12 N -0.62 -22.49 2.97 -836.06 -2.48 -24.97 16 13 C 0.70 25.10 8.30 179.05 1.49 26.59 16 14 O -0.64 -26.71 15.77 -3.99 -0.06 -26.78 16 15 N -0.74 -20.12 5.46 -478.55 -2.62 -22.74 16 16 C 0.15 3.25 5.68 86.38 0.49 3.74 16 17 C -0.12 -2.14 5.70 30.60 0.17 -1.97 16 18 C 0.07 1.11 5.94 71.98 0.43 1.54 16 19 O -0.41 -8.29 10.34 -147.43 -1.52 -9.81 16 20 C 0.06 0.88 5.39 71.98 0.39 1.27 16 21 C 0.07 1.02 3.71 30.97 0.11 1.14 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 C -0.14 -1.10 6.64 31.58 0.21 -0.89 16 24 C -0.15 -1.12 7.15 31.89 0.23 -0.89 16 25 C 0.03 0.39 7.72 72.66 0.56 0.95 16 26 O -0.40 -8.04 11.18 -147.43 -1.65 -9.69 16 27 C 0.12 4.19 6.42 86.51 0.56 4.74 16 28 C -0.11 -5.09 5.17 30.82 0.16 -4.93 16 29 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.08 2.98 6.99 -2.39 -0.02 2.96 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.41 9.54 5.96 -92.71 -0.55 8.99 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.09 0.49 7.70 -2.39 -0.02 0.47 16 46 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.10 1.01 8.14 -2.38 -0.02 1.00 16 50 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 51 H 0.09 2.50 5.64 -2.39 -0.01 2.49 16 52 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 Total: -1.00 -69.67 414.56 0.42 -69.25 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.32 Total: 22.74 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 6.16 Total: 6.91 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.85 Total: -97.83 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -3.23 Total: -46.28 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.67 0.42 -69.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542891355.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.178 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds