Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99942 * 2 1 4 4 H 1.48502 * 109.47490 * 269.99721 * 3 2 1 5 5 H 1.48507 * 109.47351 * 29.99736 * 3 2 1 6 6 H 1.48501 * 109.47371 * 149.99715 * 3 2 1 7 7 C 1.37872 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.43927 * 59.79272 * 9 7 2 11 11 C 1.53200 * 109.29270 * 181.23706 * 10 9 7 12 12 N 1.46924 * 108.89456 * 305.57637 * 11 10 9 13 13 C 1.34775 * 120.63159 * 233.55608 * 12 11 10 14 14 O 1.21585 * 119.99810 * 354.96981 * 13 12 11 15 15 N 1.34773 * 119.99548 * 174.96204 * 13 12 11 16 16 C 1.46509 * 119.99865 * 185.07796 * 15 13 12 17 17 C 1.52996 * 109.47132 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46695 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47128 * 179.97438 * 18 17 16 20 20 C 1.42899 * 114.00456 * 179.97438 * 19 18 17 21 21 C 1.53178 * 109.54763 * 269.56261 * 20 19 18 22 22 C 1.53089 * 109.16646 * 183.15101 * 21 20 19 23 23 O 1.42903 * 109.41315 * 57.60461 * 22 21 20 24 24 C 1.42907 * 114.09874 * 298.84445 * 23 22 21 25 25 C 1.53089 * 109.41673 * 61.16135 * 24 23 22 26 26 C 1.46925 * 118.73744 * 53.54010 * 12 11 10 27 27 C 1.53041 * 109.46210 * 179.97438 * 9 7 2 28 28 H 0.97005 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.45886 * 299.97324 * 9 7 2 30 30 H 1.08999 * 109.39304 * 61.36325 * 10 9 7 31 31 H 1.09001 * 109.62443 * 301.25182 * 10 9 7 32 32 H 1.09003 * 109.58604 * 185.71544 * 11 10 9 33 33 H 1.09006 * 109.58223 * 65.43764 * 11 10 9 34 34 H 0.97000 * 120.00552 * 5.07719 * 15 13 12 35 35 H 1.09005 * 109.46845 * 300.00179 * 16 15 13 36 36 H 1.09003 * 109.47202 * 59.99741 * 16 15 13 37 37 H 1.08989 * 109.47520 * 299.99640 * 17 16 15 38 38 H 1.09002 * 109.46741 * 60.00308 * 17 16 15 39 39 H 1.08998 * 109.47694 * 300.00233 * 18 17 16 40 40 H 1.08998 * 109.47593 * 60.00125 * 18 17 16 41 41 H 1.08998 * 109.54055 * 29.82673 * 20 19 18 42 42 H 1.08998 * 109.51724 * 303.05543 * 21 20 19 43 43 H 1.08996 * 109.52296 * 63.24331 * 21 20 19 44 44 H 1.08998 * 109.47930 * 297.62514 * 22 21 20 45 45 H 1.08995 * 109.48387 * 177.59306 * 22 21 20 46 46 H 1.09001 * 109.48304 * 301.17320 * 24 23 22 47 47 H 1.09008 * 109.48850 * 181.14986 * 24 23 22 48 48 H 1.08995 * 109.52446 * 182.48655 * 25 24 23 49 49 H 1.08999 * 109.52154 * 62.29183 * 25 24 23 50 50 H 1.08998 * 109.59207 * 66.17170 * 26 12 11 51 51 H 1.09002 * 109.59022 * 186.46095 * 26 12 11 52 52 H 1.08996 * 109.49614 * 58.67576 * 27 9 7 53 53 H 1.08998 * 109.52116 * 298.59478 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 0.3678 -2.5775 -1.2473 11 6 -0.4197 -3.8915 -1.2283 12 7 0.5228 -5.0090 -1.0817 13 6 0.5129 -6.0348 -1.9557 14 8 -0.3392 -6.0877 -2.8213 15 7 1.4477 -7.0019 -1.8701 16 6 1.5056 -8.0566 -2.8854 17 6 2.6477 -9.0198 -2.5556 18 6 2.7077 -10.1215 -3.6156 19 8 3.7747 -11.0208 -3.3080 20 6 3.9181 -12.0935 -4.2412 21 6 3.0733 -13.2868 -3.7841 22 6 3.2944 -14.4570 -4.7461 23 8 4.6854 -14.7820 -4.7870 24 6 5.5195 -13.7190 -5.2523 25 6 5.3879 -12.5193 -4.3106 26 6 1.4766 -4.9867 0.0357 27 6 2.2457 -3.6622 0.0005 28 1 -0.4851 0.8401 0.0004 29 1 0.6245 -2.5567 0.8906 30 1 0.9955 -2.5424 -2.1377 31 1 -0.3265 -1.7373 -1.2576 32 1 -0.9725 -3.9997 -2.1615 33 1 -1.1159 -3.8881 -0.3895 34 1 2.0821 -6.9998 -1.1364 35 1 0.5621 -8.6024 -2.8965 36 1 1.6781 -7.6094 -3.8644 37 1 3.5912 -8.4743 -2.5443 38 1 2.4746 -9.4669 -1.5768 39 1 1.7641 -10.6669 -3.6267 40 1 2.8805 -9.6747 -4.5947 41 1 3.5863 -11.7664 -5.2265 42 1 3.3726 -13.5808 -2.7781 43 1 2.0195 -13.0086 -3.7850 44 1 2.9573 -14.1759 -5.7439 45 1 2.7288 -15.3226 -4.4016 46 1 5.2116 -13.4284 -6.2567 47 1 6.5570 -14.0531 -5.2727 48 1 5.9892 -11.6922 -4.6881 49 1 5.7338 -12.7978 -3.3152 50 1 0.9368 -5.0710 0.9788 51 1 2.1737 -5.8190 -0.0621 52 1 2.8881 -3.5914 0.8782 53 1 2.8561 -3.6194 -0.9015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542896972.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -156.164365 kcal Electronic energy + Delta-G solvation = -29452.737637 eV Core-core repulsion = 25323.003584 eV Total energy + Delta-G solvation = -4129.734054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38529 -40.59344 -38.80055 -38.45736 -36.50847 -35.37207 -33.93407 -32.97011 -32.27858 -32.10413 -31.34209 -28.11253 -26.61934 -25.11293 -24.65515 -24.48314 -23.79439 -22.74049 -21.74671 -21.31985 -20.31156 -19.12760 -18.30761 -18.06626 -17.38625 -17.27149 -16.96069 -16.82894 -16.54368 -16.35626 -15.84056 -15.61577 -15.31150 -15.22532 -14.97816 -14.89400 -14.59428 -14.37728 -14.15156 -14.10362 -13.80245 -13.41247 -13.29389 -13.01075 -12.92237 -12.81491 -12.63858 -12.51115 -12.44808 -12.29415 -12.14972 -11.97659 -11.92985 -11.73120 -11.43075 -11.36190 -11.31078 -10.94030 -10.79643 -10.67612 -10.46363 -10.40437 -10.21034 -9.38732 -8.06543 -6.20487 1.41707 1.43552 1.52355 1.64192 2.14475 2.44592 2.51801 2.93596 3.01413 3.20105 3.74090 3.75970 3.95093 3.97497 3.99591 4.03826 4.08575 4.20197 4.25399 4.26101 4.33539 4.40195 4.47139 4.50559 4.52181 4.59594 4.61488 4.64631 4.70722 4.72427 4.76197 4.83255 4.91219 4.98595 5.04121 5.07972 5.08263 5.13929 5.19606 5.21769 5.25285 5.47401 5.49615 5.50747 5.66809 5.98995 6.06161 6.13303 6.21653 6.24216 6.39386 6.91153 6.99350 7.47705 7.54953 8.96804 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.001558 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.689254 B =17971.754424 C =18606.614451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.111 4.111 11 C 0.139 3.861 12 N -0.623 5.623 13 C 0.702 3.298 14 O -0.639 6.639 15 N -0.736 5.736 16 C 0.144 3.856 17 C -0.117 4.117 18 C 0.065 3.935 19 O -0.396 6.396 20 C 0.083 3.917 21 C -0.176 4.176 22 C 0.061 3.939 23 O -0.405 6.405 24 C 0.062 3.938 25 C -0.152 4.152 26 C 0.117 3.883 27 C -0.115 4.115 28 H 0.260 0.740 29 H 0.004 0.996 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.102 0.898 52 H 0.074 0.926 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 -28.189 -7.848 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.150 4.150 11 C 0.016 3.984 12 N -0.359 5.359 13 C 0.403 3.597 14 O -0.522 6.522 15 N -0.395 5.395 16 C 0.019 3.981 17 C -0.155 4.155 18 C -0.012 4.012 19 O -0.316 6.316 20 C 0.026 3.974 21 C -0.214 4.214 22 C -0.016 4.016 23 O -0.324 6.324 24 C -0.015 4.015 25 C -0.190 4.190 26 C -0.005 4.005 27 C -0.154 4.154 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.120 0.880 52 H 0.092 0.908 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.353 -28.267 -8.249 30.608 hybrid contribution 0.083 1.726 0.140 1.734 sum 8.436 -26.541 -8.109 29.006 Atomic orbital electron populations 1.69977 1.07051 1.27048 1.51409 1.25701 0.95637 1.02230 0.94985 0.85681 0.78892 0.79848 0.77951 1.20672 1.21055 1.19181 1.21594 0.93081 0.92154 1.50216 0.92877 1.18616 0.93137 0.92612 0.93048 1.21792 0.99324 0.95486 0.98366 1.21415 0.90888 0.85132 1.00997 1.47403 1.38288 1.20844 1.29320 1.16003 0.81993 0.80295 0.81410 1.90834 1.41396 1.79770 1.40179 1.45110 1.35248 1.27720 1.31392 1.21022 0.98919 0.87418 0.90692 1.21525 0.98386 0.95325 1.00247 1.22401 0.90338 0.90443 0.97974 1.87887 1.53024 1.39147 1.51493 1.22239 0.96118 0.86555 0.92495 1.22705 1.01443 0.96224 1.01045 1.22681 0.82027 0.98105 0.98776 1.87924 1.18237 1.38923 1.87296 1.22717 0.96247 0.86347 0.96174 1.22294 0.95444 0.99459 1.01794 1.21827 0.91297 0.98576 0.88833 1.21863 0.98106 0.94155 1.01245 0.93085 0.97805 0.96059 0.90876 0.91541 0.92258 0.75220 0.91912 0.92413 0.90045 0.89791 0.92115 0.92194 0.90890 0.91423 0.89810 0.91767 0.87560 0.91678 0.87118 0.89436 0.91349 0.90730 0.87993 0.90777 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.94 11.30 21.44 0.24 -51.70 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.53 -28.43 8.56 25.60 0.22 -28.21 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 9 C 0.04 2.12 2.06 -11.50 -0.02 2.09 16 10 C -0.11 -5.27 5.16 30.69 0.16 -5.12 16 11 C 0.14 5.72 6.41 86.37 0.55 6.27 16 12 N -0.62 -22.03 2.97 -836.88 -2.49 -24.52 16 13 C 0.70 24.43 8.30 179.06 1.49 25.91 16 14 O -0.64 -27.20 15.79 -3.99 -0.06 -27.26 16 15 N -0.74 -18.07 5.47 -478.52 -2.62 -20.68 16 16 C 0.14 2.90 5.68 86.38 0.49 3.39 16 17 C -0.12 -1.68 5.70 30.59 0.17 -1.51 16 18 C 0.07 0.88 5.75 71.98 0.41 1.30 16 19 O -0.40 -6.42 10.00 -148.98 -1.49 -7.91 16 20 C 0.08 1.05 2.70 30.71 0.08 1.13 16 21 C -0.18 -2.03 5.76 30.68 0.18 -1.85 16 22 C 0.06 0.62 6.84 72.01 0.49 1.11 16 23 O -0.40 -5.77 10.77 -148.98 -1.60 -7.38 16 24 C 0.06 0.60 6.84 72.01 0.49 1.10 16 25 C -0.15 -1.76 5.79 30.68 0.18 -1.58 16 26 C 0.12 3.43 6.43 86.37 0.56 3.98 16 27 C -0.12 -4.24 5.30 30.67 0.16 -4.07 16 28 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 3.94 6.03 -2.39 -0.01 3.92 16 32 H 0.07 2.84 7.03 -2.39 -0.02 2.83 16 33 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.41 7.80 5.93 -92.71 -0.55 7.25 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16 40 H 0.06 0.73 8.09 -2.39 -0.02 0.71 16 41 H 0.07 0.75 7.79 -2.39 -0.02 0.73 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.82 7.99 -2.39 -0.02 0.80 16 44 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.10 2.13 5.56 -2.39 -0.01 2.11 16 52 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 53 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.38 410.63 0.40 -68.98 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.33 Total: 20.28 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.06 Total: 5.10 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -4.86 Total: -96.90 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -3.16 Total: -42.55 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.38 0.40 -68.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542896972.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.181 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds