Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46714 * 267.31851 * 3 2 1 5 5 H 1.48497 * 109.47211 * 27.31471 * 3 2 1 6 6 H 1.48501 * 109.47213 * 147.32248 * 3 2 1 7 7 C 1.37875 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99440 * 353.52766 * 7 2 1 9 9 C 1.50691 * 120.00310 * 173.52245 * 7 2 1 10 10 O 1.42900 * 110.88754 * 328.70473 * 9 7 2 11 11 C 1.55155 * 111.04101 * 92.61191 * 9 7 2 12 12 C 1.54333 * 103.02328 * 153.39271 * 11 9 7 13 13 N 1.47020 * 107.26560 * 338.14323 * 12 11 9 14 14 C 1.34781 * 125.64631 * 178.84312 * 13 12 11 15 15 O 1.21592 * 119.99613 * 179.69027 * 14 13 12 16 16 N 1.34778 * 120.00234 * 359.69659 * 14 13 12 17 17 C 1.46494 * 120.00085 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47141 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47253 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47207 * 180.02562 * 19 18 17 21 21 C 1.42901 * 113.99608 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.46953 * 269.99659 * 21 20 19 23 23 C 1.53000 * 109.47094 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47105 * 60.00089 * 23 22 21 25 25 C 1.52997 * 109.47071 * 299.99925 * 24 23 22 26 26 C 1.52998 * 109.46801 * 150.00022 * 21 20 19 27 27 C 1.47419 * 108.70557 * 358.58368 * 13 12 11 28 28 H 0.96999 * 120.00681 * 0.02562 * 1 2 3 29 29 H 0.96696 * 114.00153 * 292.32994 * 10 9 7 30 30 H 1.08999 * 110.72001 * 271.95542 * 11 9 7 31 31 H 1.08999 * 110.71895 * 35.22752 * 11 9 7 32 32 H 1.09000 * 109.99653 * 218.66537 * 12 11 9 33 33 H 1.09006 * 109.77582 * 97.49598 * 12 11 9 34 34 H 0.96998 * 119.99797 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47587 * 300.00025 * 17 16 14 36 36 H 1.09005 * 109.47116 * 60.00312 * 17 16 14 37 37 H 1.09001 * 109.46949 * 300.00475 * 18 17 16 38 38 H 1.08995 * 109.46836 * 60.00222 * 18 17 16 39 39 H 1.09001 * 109.46886 * 300.00300 * 19 18 17 40 40 H 1.09005 * 109.47526 * 59.99723 * 19 18 17 41 41 H 1.08994 * 109.47327 * 30.00087 * 21 20 19 42 42 H 1.09003 * 109.47637 * 300.00512 * 22 21 20 43 43 H 1.09007 * 109.47419 * 60.00379 * 22 21 20 44 44 H 1.08998 * 109.47025 * 299.99757 * 23 22 21 45 45 H 1.09008 * 109.47102 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47154 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.46903 * 60.00390 * 24 23 22 48 48 H 1.08992 * 109.47299 * 299.99656 * 25 24 23 49 49 H 1.08998 * 109.46832 * 179.97438 * 25 24 23 50 50 H 1.08998 * 109.47492 * 299.99731 * 26 21 20 51 51 H 1.09007 * 109.47226 * 59.99655 * 26 21 20 52 52 H 1.08999 * 110.36942 * 143.19120 * 27 13 12 53 53 H 1.09005 * 110.36927 * 265.41038 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5532 2.0137 -1.3986 5 1 1.4192 2.6684 0.6424 6 1 3.5172 1.4573 0.7559 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1064 9 6 3.5043 -1.1982 -0.1467 10 8 3.9404 -0.1000 -0.9504 11 6 4.2002 -1.1833 1.2400 12 6 5.5566 -1.8623 0.9556 13 7 5.3952 -2.6654 -0.2652 14 6 6.3603 -3.3957 -0.8584 15 8 6.1110 -4.0283 -1.8665 16 7 7.6016 -3.4250 -0.3341 17 6 8.6504 -4.2192 -0.9785 18 6 9.9535 -4.0798 -0.1888 19 6 11.0490 -4.9087 -0.8622 20 8 12.2659 -4.7790 -0.1243 21 6 13.3594 -5.5179 -0.6723 22 6 13.3831 -6.9211 -0.0629 23 6 14.5542 -7.7120 -0.6491 24 6 15.8664 -6.9941 -0.3274 25 6 15.8428 -5.5909 -0.9368 26 6 14.6718 -4.8002 -0.3510 27 6 4.0013 -2.5447 -0.7297 28 1 -0.4851 0.8400 -0.0004 29 1 3.6750 -0.1618 -1.8782 30 1 4.3437 -0.1606 1.5885 31 1 3.6278 -1.7621 1.9649 32 1 5.8327 -2.5073 1.7898 33 1 6.3238 -1.1034 0.8014 34 1 7.8004 -2.9201 0.4700 35 1 8.3500 -5.2667 -1.0025 36 1 8.8031 -3.8615 -1.9968 37 1 10.2537 -3.0322 -0.1652 38 1 9.8011 -4.4371 0.8295 39 1 10.7489 -5.9563 -0.8862 40 1 11.2013 -4.5511 -1.8806 41 1 13.2417 -5.5932 -1.7533 42 1 13.5008 -6.8458 1.0182 43 1 12.4480 -7.4325 -0.2917 44 1 14.4368 -7.7874 -1.7301 45 1 14.5714 -8.7116 -0.2145 46 1 16.7008 -7.5578 -0.7446 47 1 15.9838 -6.9188 0.7537 48 1 15.7255 -5.6663 -2.0178 49 1 16.7774 -5.0793 -0.7072 50 1 14.6550 -3.8005 -0.7852 51 1 14.7896 -4.7248 0.7300 52 1 3.9648 -2.5229 -1.8188 53 1 3.4010 -3.3702 -0.3471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591898185.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -170.283223 kcal Electronic energy + Delta-G solvation = -29549.932074 eV Core-core repulsion = 25419.585780 eV Total energy + Delta-G solvation = -4130.346293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36427 -40.18107 -39.44132 -37.74242 -36.37782 -36.25113 -34.44880 -33.09082 -31.74555 -31.64303 -30.35259 -29.89619 -27.43780 -25.90092 -23.98968 -23.55140 -23.06578 -22.69237 -21.56055 -21.07664 -20.68948 -19.55834 -18.93127 -17.88132 -17.31088 -17.24580 -16.94229 -16.81271 -16.53614 -16.33667 -15.64532 -15.51378 -15.36187 -15.13978 -14.99103 -14.55760 -14.53106 -14.29475 -14.04412 -13.94714 -13.77299 -13.40673 -13.23160 -13.21200 -13.10717 -12.83666 -12.73947 -12.46320 -12.30661 -12.22964 -12.20253 -12.04317 -11.94559 -11.86206 -11.47896 -11.39053 -11.31958 -11.23164 -11.21164 -10.63179 -10.40760 -10.33538 -10.23916 -9.42827 -8.32840 -6.46697 1.51935 1.54152 1.56561 1.75951 2.10187 2.46947 2.58499 2.98367 3.09336 3.49984 3.75553 3.79858 3.83811 3.95034 3.95796 4.04067 4.11740 4.14844 4.27420 4.28301 4.29556 4.40520 4.43492 4.48002 4.53688 4.56379 4.58044 4.61227 4.64812 4.68989 4.83551 4.93283 4.96260 5.01637 5.08142 5.12941 5.13246 5.19113 5.21674 5.22578 5.23521 5.31350 5.38679 5.38830 5.46400 5.50203 5.54753 6.05894 6.08851 6.30592 6.59174 6.89910 6.99292 7.31256 7.51372 8.80026 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001590 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.918857 B =17610.078228 C =17962.037668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.026 3.974 3 Si 1.011 2.989 4 H -0.288 1.288 5 H -0.337 1.337 6 H -0.254 1.254 7 C -0.549 4.549 8 H 0.044 0.956 9 C 0.217 3.783 10 O -0.559 6.559 11 C -0.118 4.118 12 C 0.107 3.893 13 N -0.631 5.631 14 C 0.715 3.285 15 O -0.640 6.640 16 N -0.731 5.731 17 C 0.144 3.856 18 C -0.116 4.116 19 C 0.066 3.934 20 O -0.399 6.399 21 C 0.086 3.914 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.116 4.116 27 C 0.117 3.883 28 H 0.267 0.733 29 H 0.379 0.621 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.058 0.942 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.688 -10.992 1.421 35.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.174 4.174 3 Si 0.845 3.155 4 H -0.215 1.215 5 H -0.270 1.270 6 H -0.179 1.179 7 C -0.587 4.587 8 H 0.063 0.937 9 C 0.176 3.824 10 O -0.368 6.368 11 C -0.157 4.157 12 C -0.015 4.015 13 N -0.368 5.368 14 C 0.417 3.583 15 O -0.522 6.522 16 N -0.387 5.387 17 C 0.020 3.980 18 C -0.153 4.153 19 C -0.011 4.011 20 O -0.319 6.319 21 C 0.029 3.971 22 C -0.178 4.178 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.076 0.924 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 33.717 -11.144 1.391 35.538 hybrid contribution -0.900 0.509 -0.505 1.150 sum 32.818 -10.635 0.886 34.509 Atomic orbital electron populations 1.70086 1.08580 1.28538 1.50212 1.25864 0.95309 1.03739 0.92504 0.84671 0.76812 0.75902 0.78163 1.21508 1.26971 1.17896 1.21347 0.91047 0.93849 1.52476 0.93743 1.20135 0.91297 0.82017 0.88973 1.86062 1.79683 1.46364 1.24648 1.22861 0.94412 1.01520 0.96859 1.22153 0.98645 0.94411 0.86289 1.47631 1.10137 1.49694 1.29329 1.15605 0.80799 0.79559 0.82337 1.90862 1.82387 1.50667 1.28328 1.44908 1.07911 1.53743 1.32186 1.21027 0.85485 0.95169 0.96301 1.21517 0.91523 1.02045 1.00261 1.22368 0.84261 0.99550 0.94920 1.87860 1.19241 1.71048 1.53732 1.22243 0.86560 0.91114 0.97180 1.22024 0.99226 0.95484 1.01061 1.21504 0.93950 0.98851 1.01112 1.21587 0.97518 0.95817 1.01076 1.21498 0.97637 0.95635 1.00448 1.21587 0.92798 0.99139 1.01796 1.22627 0.80112 0.99014 0.98926 0.92431 0.77150 0.90008 0.89663 0.89193 0.90310 0.75333 0.92087 0.92246 0.89925 0.89830 0.92482 0.92391 0.91772 0.91868 0.92054 0.91569 0.91151 0.90844 0.92018 0.91465 0.90604 0.91586 0.91770 0.92366 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.50 13.96 21.45 0.30 -56.21 16 2 C 0.03 1.43 5.46 84.65 0.46 1.89 16 3 Si 1.01 47.25 24.93 68.60 1.71 48.96 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.34 -16.28 7.11 99.48 0.71 -15.57 16 6 H -0.25 -11.09 5.42 99.48 0.54 -10.55 16 7 C -0.55 -29.23 8.89 25.60 0.23 -29.01 16 8 H 0.04 2.64 8.00 -2.91 -0.02 2.62 16 9 C 0.22 9.24 0.70 -10.15 -0.01 9.23 16 10 O -0.56 -23.08 8.52 -148.98 -1.27 -24.35 16 11 C -0.12 -4.22 5.90 31.79 0.19 -4.03 16 12 C 0.11 3.00 6.15 86.73 0.53 3.54 16 13 N -0.63 -21.70 3.33 -829.71 -2.76 -24.46 16 14 C 0.72 24.61 8.49 179.05 1.52 26.13 16 15 O -0.64 -27.36 16.60 -4.01 -0.07 -27.43 16 16 N -0.73 -17.59 5.52 -478.53 -2.64 -20.23 16 17 C 0.14 2.91 5.67 86.38 0.49 3.40 16 18 C -0.12 -1.67 5.70 30.59 0.17 -1.50 16 19 C 0.07 0.94 5.75 71.98 0.41 1.36 16 20 O -0.40 -6.70 9.99 -148.98 -1.49 -8.18 16 21 C 0.09 1.14 2.61 30.59 0.08 1.22 16 22 C -0.14 -1.66 5.54 30.59 0.17 -1.49 16 23 C -0.12 -1.03 5.92 30.59 0.18 -0.85 16 24 C -0.12 -0.96 5.92 30.59 0.18 -0.78 16 25 C -0.11 -0.95 5.92 30.58 0.18 -0.76 16 26 C -0.12 -1.33 5.57 30.58 0.17 -1.16 16 27 C 0.12 4.75 6.07 86.86 0.53 5.27 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.38 14.29 8.98 -74.06 -0.67 13.63 16 30 H 0.08 2.91 6.65 -2.39 -0.02 2.90 16 31 H 0.08 3.03 8.03 -2.39 -0.02 3.01 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.41 7.59 7.46 -92.71 -0.69 6.89 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 40 H 0.06 0.76 8.08 -2.38 -0.02 0.74 16 41 H 0.06 0.77 7.79 -2.39 -0.02 0.76 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.75 7.87 -2.38 -0.02 0.73 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.06 2.46 8.02 -2.39 -0.02 2.44 16 53 H 0.06 2.45 7.99 -2.38 -0.02 2.43 16 Total: -1.00 -71.18 409.91 -1.36 -72.54 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.64 Total: 26.94 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.49 Total: 12.43 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -5.10 Total: -100.90 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -2.82 Total: -59.96 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.71 Total: 48.96 kcal Total: -71.18 -1.36 -72.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591898185.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.744 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds