Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48496 * 109.46927 * 270.00070 * 3 2 1 5 5 H 1.48499 * 109.46820 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.46998 * 149.99729 * 3 2 1 7 7 C 1.37880 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99960 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99443 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46718 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.45893 * 184.99854 * 10 9 7 12 12 C 1.53194 * 109.31072 * 178.62610 * 11 10 9 13 13 N 1.46930 * 108.77585 * 54.63697 * 12 11 10 14 14 C 1.34774 * 120.63056 * 126.36485 * 13 12 11 15 15 O 1.21585 * 120.00052 * 185.22716 * 14 13 12 16 16 N 1.34775 * 120.00362 * 5.22739 * 14 13 12 17 17 C 1.46500 * 120.00524 * 175.01762 * 16 14 13 18 18 C 1.52993 * 109.47350 * 180.02562 * 17 16 14 19 19 O 1.42899 * 109.47878 * 64.99542 * 18 17 16 20 20 C 1.42895 * 114.00563 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47128 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.81802 * 305.56214 * 21 20 19 23 23 C 1.54385 * 109.82744 * 184.58596 * 21 20 19 24 24 C 1.55300 * 102.25074 * 219.12732 * 23 21 20 25 25 C 1.54946 * 100.94474 * 34.13506 * 24 23 21 26 26 O 1.43232 * 109.83057 * 66.45349 * 21 20 19 27 27 C 1.46925 * 118.73750 * 306.64550 * 13 12 11 28 28 C 1.52759 * 109.01040 * 53.30711 * 27 13 12 29 29 H 0.97001 * 119.99915 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47523 * 60.00367 * 9 7 2 31 31 H 1.08993 * 109.47338 * 299.99753 * 9 7 2 32 32 H 1.09001 * 109.45819 * 304.97183 * 10 9 7 33 33 H 1.08996 * 109.49622 * 58.68189 * 11 10 9 34 34 H 1.08993 * 109.52340 * 298.59216 * 11 10 9 35 35 H 1.08999 * 109.59116 * 294.85158 * 12 11 10 36 36 H 1.09000 * 109.58561 * 174.42098 * 12 11 10 37 37 H 0.97007 * 119.99842 * 355.02459 * 16 14 13 38 38 H 1.09000 * 109.47053 * 60.00118 * 17 16 14 39 39 H 1.09009 * 109.46526 * 300.00025 * 17 16 14 40 40 H 1.09003 * 109.46880 * 304.99395 * 18 17 16 41 41 H 1.09003 * 109.47441 * 184.99966 * 18 17 16 42 42 H 1.09007 * 109.47069 * 300.00111 * 20 19 18 43 43 H 1.08998 * 109.47145 * 59.99605 * 20 19 18 44 44 H 1.08999 * 110.84799 * 337.31921 * 23 21 20 45 45 H 1.09003 * 110.84734 * 100.93875 * 23 21 20 46 46 H 1.09004 * 111.12508 * 276.21514 * 24 23 21 47 47 H 1.09003 * 111.16146 * 152.07085 * 24 23 21 48 48 H 1.09001 * 110.30789 * 204.64277 * 25 24 23 49 49 H 1.08999 * 110.39309 * 82.51417 * 25 24 23 50 50 H 1.09008 * 109.58496 * 173.14527 * 27 13 12 51 51 H 1.09005 * 109.58515 * 293.56353 * 27 13 12 52 52 H 1.09001 * 109.56133 * 185.55695 * 28 27 13 53 53 H 1.08997 * 109.38526 * 65.51661 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5467 -2.6381 0.1273 12 6 6.0508 -4.0843 0.1614 13 7 5.5427 -4.7903 -1.0228 14 6 6.3860 -5.4395 -1.8496 15 8 5.9669 -5.9389 -2.8759 16 7 7.6939 -5.5353 -1.5389 17 6 8.5902 -6.3327 -2.3798 18 6 10.0090 -6.2758 -1.8101 19 8 10.0332 -6.9062 -0.5279 20 6 11.3191 -6.9070 0.0953 21 6 11.2269 -7.6041 1.4542 22 1 10.4473 -7.1378 2.0565 23 6 12.5835 -7.5086 2.1848 24 6 12.7000 -8.9083 2.8476 25 6 12.0060 -9.7960 1.7841 26 8 10.9320 -8.9934 1.2685 27 6 4.0984 -4.7696 -1.2919 28 6 3.6156 -3.3204 -1.3066 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6800 0.8911 31 1 3.8752 -0.6804 -0.8888 32 1 3.5869 -3.1754 0.8429 33 1 5.8361 -2.1303 1.0473 34 1 5.9835 -2.1206 -0.7268 35 1 5.6882 -4.5766 1.0637 36 1 7.1407 -4.0917 0.1514 37 1 8.0419 -5.0763 -0.7583 38 1 8.5891 -5.9323 -3.3936 39 1 8.2472 -7.3673 -2.3972 40 1 10.3186 -5.2356 -1.7094 41 1 10.6919 -6.7946 -2.4829 42 1 12.0295 -7.4386 -0.5379 43 1 11.6555 -5.8797 0.2356 44 1 13.3954 -7.3463 1.4759 45 1 12.5631 -6.7225 2.9396 46 1 12.1638 -8.9397 3.7961 47 1 13.7432 -9.1957 2.9791 48 1 11.6133 -10.7021 2.2456 49 1 12.7046 -10.0503 0.9870 50 1 3.9005 -5.2292 -2.2603 51 1 3.5733 -5.3190 -0.5104 52 1 2.5305 -3.2983 -1.4071 53 1 4.0697 -2.7964 -2.1475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591936079.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -154.630243 kcal Electronic energy + Delta-G solvation = -29908.471259 eV Core-core repulsion = 25778.803730 eV Total energy + Delta-G solvation = -4129.667529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45906 -40.51949 -39.11868 -38.52670 -35.86539 -35.63561 -34.03852 -33.14134 -32.23508 -31.66331 -30.59030 -29.47138 -26.37444 -26.11995 -24.37307 -23.59052 -23.05866 -22.60082 -22.02137 -21.41318 -20.53435 -19.23434 -18.70884 -18.16077 -17.74209 -17.37182 -16.96090 -16.56352 -16.42355 -16.33123 -15.98108 -15.41721 -15.31794 -15.13708 -14.88336 -14.83761 -14.59490 -14.36288 -14.20024 -14.09265 -13.79238 -13.52356 -13.38159 -13.14139 -12.94754 -12.79072 -12.64144 -12.39218 -12.27878 -12.15332 -12.10761 -12.07755 -11.96356 -11.70466 -11.69332 -11.43785 -11.29130 -11.05614 -10.86770 -10.71156 -10.58973 -10.45775 -10.22290 -9.43761 -8.24131 -6.26176 1.37233 1.38069 1.49832 1.66360 2.12669 2.38994 2.56518 2.94397 2.98822 3.11316 3.58290 3.78694 3.90171 3.97152 3.98314 4.04530 4.07286 4.17607 4.21075 4.22913 4.29742 4.41240 4.41759 4.45558 4.51841 4.55076 4.65698 4.67823 4.69896 4.79087 4.81665 4.86170 4.88500 4.91920 4.96231 4.97468 5.06074 5.08474 5.19688 5.24863 5.27120 5.32411 5.45203 5.49697 5.61854 5.73073 5.76321 5.99373 6.08419 6.29448 6.35981 6.81819 6.97345 7.37385 7.54586 8.92443 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.001913 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.449631 B =14630.107339 C =15406.090607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.518 4.518 8 H 0.036 0.964 9 C -0.006 4.006 10 C -0.070 4.070 11 C -0.124 4.124 12 C 0.117 3.883 13 N -0.625 5.625 14 C 0.701 3.299 15 O -0.640 6.640 16 N -0.730 5.730 17 C 0.140 3.860 18 C 0.057 3.943 19 O -0.402 6.402 20 C 0.051 3.949 21 C 0.073 3.927 22 H 0.078 0.922 23 C -0.142 4.142 24 C -0.152 4.152 25 C 0.036 3.964 26 O -0.404 6.404 27 C 0.136 3.864 28 C -0.112 4.112 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.010 0.990 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.409 0.591 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.058 0.942 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.668 -15.037 4.820 38.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.556 4.556 8 H 0.054 0.946 9 C -0.044 4.044 10 C -0.088 4.088 11 C -0.162 4.162 12 C -0.006 4.006 13 N -0.361 5.361 14 C 0.403 3.597 15 O -0.522 6.522 16 N -0.388 5.388 17 C 0.015 3.985 18 C -0.019 4.019 19 O -0.322 6.322 20 C -0.026 4.026 21 C 0.015 3.985 22 H 0.096 0.904 23 C -0.179 4.179 24 C -0.189 4.189 25 C -0.040 4.040 26 O -0.324 6.324 27 C 0.013 3.987 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.122 0.878 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.076 0.924 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 33.917 -15.480 4.091 37.506 hybrid contribution -0.322 1.108 0.018 1.154 sum 33.595 -14.371 4.110 36.770 Atomic orbital electron populations 1.70083 1.08279 1.27835 1.53372 1.26020 0.95563 1.03451 0.94663 0.85697 0.79723 0.78612 0.78816 1.19891 1.21336 1.16552 1.21502 0.92109 0.92926 1.49071 0.94558 1.19583 0.93891 0.94688 0.96207 1.20924 0.95092 0.96127 0.96688 1.21974 0.94800 0.96305 1.03110 1.21813 0.99524 0.91907 0.87308 1.47351 1.06886 1.54830 1.27069 1.16033 0.81893 0.79205 0.82613 1.90855 1.77660 1.55959 1.27716 1.45086 1.06051 1.55079 1.32620 1.21277 0.87907 0.95216 0.94054 1.22779 0.95212 0.98583 0.85361 1.87976 1.31337 1.80041 1.32865 1.23085 0.85051 1.00635 0.93799 1.22932 0.98450 0.82205 0.94876 0.90419 1.23120 0.95481 0.98938 1.00408 1.23274 1.02920 0.94040 0.98691 1.23600 0.89223 0.95050 0.96089 1.88529 1.43872 1.17061 1.82923 1.21312 0.78899 0.96724 1.01781 1.21688 1.00622 0.94705 0.97999 0.92808 0.95825 0.97122 0.92220 0.88974 0.92147 0.90091 0.88088 0.75247 0.89952 0.92848 0.90498 0.89833 0.92456 0.89918 0.88909 0.88137 0.90264 0.87842 0.89604 0.91638 0.90808 0.91060 0.92358 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 3 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.52 -29.41 8.94 25.60 0.23 -29.19 16 8 H 0.04 2.27 7.30 -2.91 -0.02 2.25 16 9 C -0.01 -0.29 3.52 29.85 0.10 -0.18 16 10 C -0.07 -2.56 2.10 -10.76 -0.02 -2.58 16 11 C -0.12 -3.32 5.36 30.67 0.16 -3.16 16 12 C 0.12 2.62 6.39 86.36 0.55 3.17 16 13 N -0.62 -18.40 2.98 -837.73 -2.50 -20.89 16 14 C 0.70 21.98 8.30 179.06 1.49 23.46 16 15 O -0.64 -25.45 15.77 -3.98 -0.06 -25.51 16 16 N -0.73 -16.50 5.41 -478.54 -2.59 -19.09 16 17 C 0.14 2.73 6.06 86.38 0.52 3.26 16 18 C 0.06 0.72 6.07 71.98 0.44 1.16 16 19 O -0.40 -6.86 10.27 -146.52 -1.51 -8.36 16 20 C 0.05 0.57 5.47 71.98 0.39 0.97 16 21 C 0.07 0.93 3.81 31.06 0.12 1.05 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 C -0.14 -0.84 6.54 31.85 0.21 -0.64 16 24 C -0.15 -0.95 7.15 32.05 0.23 -0.72 16 25 C 0.04 0.41 7.78 72.65 0.56 0.97 16 26 O -0.40 -7.59 11.00 -146.52 -1.61 -9.20 16 27 C 0.14 4.56 6.41 86.22 0.55 5.11 16 28 C -0.11 -4.24 5.17 30.53 0.16 -4.08 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 31 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.61 5.65 -2.39 -0.01 1.59 16 37 H 0.41 7.15 5.96 -92.70 -0.55 6.60 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 0.31 7.85 -2.39 -0.02 0.29 16 45 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 46 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 47 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 2.68 7.00 -2.38 -0.02 2.66 16 51 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 52 H 0.06 2.54 6.91 -2.39 -0.02 2.52 16 53 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -79.44 412.46 0.35 -79.09 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.27 Total: 18.79 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.16 Total: -1.00 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -4.79 Total: -100.11 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -3.18 Total: -43.08 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -79.44 0.35 -79.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591936079.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.545 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds