Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48503 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47146 * 299.99790 * 3 2 1 6 6 H 1.48503 * 109.47474 * 59.99592 * 3 2 1 7 7 C 1.37873 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99796 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.88727 * 62.42539 * 9 7 2 11 11 C 1.55156 * 111.03339 * 186.32686 * 9 7 2 12 12 C 1.54338 * 103.01985 * 153.39444 * 11 9 7 13 13 N 1.47027 * 107.26480 * 338.14486 * 12 11 9 14 14 C 1.34770 * 125.64685 * 178.84890 * 13 12 11 15 15 O 1.21595 * 119.99733 * 179.68766 * 14 13 12 16 16 N 1.34768 * 120.00440 * 359.69038 * 14 13 12 17 17 C 1.46504 * 120.00533 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47427 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.47119 * 64.99813 * 18 17 16 20 20 C 1.42900 * 113.99918 * 180.02562 * 19 18 17 21 21 C 1.45542 * 108.89491 * 149.99982 * 20 19 18 22 22 C 1.54245 * 112.32700 * 182.63867 * 21 20 19 23 23 C 1.50546 * 108.48390 * 279.88442 * 22 21 20 24 24 C 1.54069 * 112.41623 * 94.26691 * 23 22 21 25 25 C 1.54056 * 112.81521 * 318.27597 * 24 23 22 26 26 C 1.50476 * 112.50048 * 318.28454 * 25 24 23 27 27 C 1.47420 * 108.70110 * 358.58024 * 13 12 11 28 28 H 0.97005 * 119.99875 * 0.02562 * 1 2 3 29 29 H 0.96699 * 113.99778 * 297.57254 * 10 9 7 30 30 H 1.09001 * 110.72156 * 271.95114 * 11 9 7 31 31 H 1.08998 * 110.72437 * 35.23097 * 11 9 7 32 32 H 1.08996 * 109.99468 * 218.66511 * 12 11 9 33 33 H 1.08999 * 109.77969 * 97.49471 * 12 11 9 34 34 H 0.96999 * 119.99861 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.47174 * 59.99385 * 17 16 14 36 36 H 1.09003 * 109.46385 * 299.99639 * 17 16 14 37 37 H 1.08999 * 109.47328 * 304.99656 * 18 17 16 38 38 H 1.09000 * 109.46830 * 184.99595 * 18 17 16 39 39 H 1.09002 * 108.87257 * 31.39535 * 20 19 18 40 40 H 1.09002 * 108.89596 * 303.34529 * 21 20 19 41 41 H 1.09003 * 108.89788 * 61.93564 * 21 20 19 42 42 H 1.09000 * 109.62486 * 39.68278 * 22 21 20 43 43 H 1.08999 * 109.63051 * 160.25691 * 22 21 20 44 44 H 1.09000 * 108.92627 * 333.51136 * 23 22 21 45 45 H 1.09006 * 108.83640 * 214.96125 * 23 22 21 46 46 H 1.09000 * 108.81197 * 197.41864 * 24 23 22 47 47 H 1.08999 * 108.81384 * 79.13971 * 24 23 22 48 48 H 1.09003 * 108.87949 * 197.50496 * 25 24 23 49 49 H 1.09005 * 108.87812 * 79.06574 * 25 24 23 50 50 H 1.09002 * 109.62685 * 334.44737 * 26 25 24 51 51 H 1.08994 * 109.79059 * 213.95829 * 26 25 24 52 52 H 1.09004 * 110.36966 * 143.19551 * 27 13 12 53 53 H 1.09003 * 110.36876 * 265.40886 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4615 -2.6316 -1.1832 11 6 2.2191 -3.7010 0.1608 12 6 1.3287 -4.7801 0.8126 13 7 0.2054 -4.0865 1.4597 14 6 -0.8078 -4.6797 2.1213 15 8 -1.6841 -4.0032 2.6243 16 7 -0.8498 -6.0227 2.2255 17 6 -1.9516 -6.6677 2.9442 18 6 -1.7610 -8.1854 2.9141 19 8 -0.5809 -8.5319 3.6416 20 6 -0.3093 -9.9345 3.6748 21 6 1.1298 -10.1339 3.7618 22 6 1.5170 -11.6268 3.7370 23 6 1.3087 -12.1968 5.1147 24 6 -0.0752 -12.8547 5.2753 25 6 -1.2050 -12.0367 4.6213 26 6 -1.0626 -10.5590 4.8670 27 6 0.3745 -2.6343 1.2706 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2244 -1.9564 -1.2760 30 1 2.5843 -4.0343 -0.8107 31 1 3.0492 -3.4427 0.8182 32 1 1.9000 -5.3351 1.5567 33 1 0.9533 -5.4599 0.0477 34 1 -0.1510 -6.5624 1.8240 35 1 -2.8969 -6.4109 2.4662 36 1 -1.9618 -6.3229 3.9783 37 1 -1.6620 -8.5188 1.8810 38 1 -2.6245 -8.6691 3.3707 39 1 -0.6731 -10.3859 2.7517 40 1 1.6073 -9.6314 2.9207 41 1 1.4922 -9.6907 4.6893 42 1 0.8883 -12.1562 3.0210 43 1 2.5646 -11.7287 3.4541 44 1 1.4053 -11.3954 5.8472 45 1 2.0788 -12.9441 5.3066 46 1 -0.2909 -12.9648 6.3381 47 1 -0.0488 -13.8446 4.8199 48 1 -2.1611 -12.3708 5.0243 49 1 -1.1950 -12.2181 3.5465 50 1 -0.4978 -10.3932 5.7844 51 1 -2.0486 -10.1031 4.9566 52 1 -0.5930 -2.1565 1.1163 53 1 0.8803 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591963825.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -163.627112 kcal Electronic energy + Delta-G solvation = -30632.381143 eV Core-core repulsion = 26502.323480 eV Total energy + Delta-G solvation = -4130.057663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.25323 -40.51723 -39.15292 -37.88094 -36.02292 -35.63548 -34.22112 -33.13446 -32.43422 -31.74130 -30.03485 -29.33082 -26.88887 -25.74727 -25.04958 -24.34505 -23.22971 -21.60140 -21.45400 -21.02460 -20.15947 -19.26720 -18.81185 -18.07875 -17.46473 -16.97760 -16.89324 -16.60649 -16.35306 -16.15798 -15.75695 -15.45340 -15.23789 -14.84444 -14.71882 -14.64292 -14.33222 -14.26657 -13.91654 -13.79397 -13.55912 -13.44797 -13.22717 -13.04493 -12.93837 -12.85673 -12.68680 -12.51088 -12.32763 -12.19202 -12.08013 -12.02580 -11.82853 -11.42848 -11.37930 -11.32042 -11.22308 -11.18175 -11.13945 -10.66404 -10.40368 -10.31305 -10.17980 -9.30890 -8.23410 -6.40651 1.41338 1.44574 1.55637 1.71930 2.16781 2.39203 2.62007 3.02569 3.13119 3.65275 3.80837 3.84115 3.95903 4.04494 4.10714 4.17567 4.19937 4.23768 4.27082 4.34702 4.35248 4.40430 4.42559 4.49670 4.57306 4.62758 4.65854 4.77613 4.83670 4.92386 4.99951 5.00818 5.07886 5.11232 5.14072 5.26588 5.30283 5.31496 5.33353 5.35272 5.36777 5.38632 5.47531 5.47672 5.52034 5.59078 5.77189 6.06438 6.20430 6.32760 6.67081 7.08185 7.28714 7.36062 7.58991 8.81989 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002037 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.833517 B =13740.012289 C =14354.454179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.109 3.891 13 N -0.635 5.635 14 C 0.708 3.292 15 O -0.647 6.647 16 N -0.725 5.725 17 C 0.139 3.861 18 C 0.061 3.939 19 O -0.403 6.403 20 C 0.095 3.905 21 C -0.122 4.122 22 C -0.106 4.106 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.137 4.137 27 C 0.129 3.871 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.043 0.957 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -27.869 7.235 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.013 4.013 13 N -0.371 5.371 14 C 0.410 3.590 15 O -0.530 6.530 16 N -0.382 5.382 17 C 0.015 3.985 18 C -0.015 4.015 19 O -0.323 6.323 20 C 0.038 3.962 21 C -0.160 4.160 22 C -0.143 4.143 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.175 4.175 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.244 0.756 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.062 0.938 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.470 -27.734 7.646 28.772 hybrid contribution -0.200 1.620 0.034 1.633 sum 0.270 -26.114 7.680 27.221 Atomic orbital electron populations 1.69862 1.07201 1.28286 1.50139 1.25860 0.95770 1.02936 0.93150 0.85396 0.79198 0.78919 0.77434 1.18658 1.20562 1.20972 1.21825 0.93967 0.91177 1.52263 0.91223 1.19868 0.87181 0.93191 0.80585 1.86088 1.51445 1.56777 1.45078 1.22593 0.97161 0.93744 1.01274 1.22089 0.87169 0.95427 0.96650 1.47865 1.24434 1.08641 1.56166 1.15773 0.81246 0.82817 0.79150 1.90840 1.41526 1.64841 1.55799 1.44876 1.29741 1.03368 1.60235 1.21304 0.89259 0.91388 0.96500 1.22756 0.89346 0.92520 0.96913 1.88010 1.44322 1.24947 1.75033 1.21144 0.96237 0.80596 0.98181 1.20555 0.94834 0.97846 1.02765 1.21229 1.01955 0.93341 0.97823 1.21397 0.97196 1.00301 0.97104 1.21919 0.93814 0.98968 1.00750 1.21256 0.98852 0.93760 1.01481 1.21822 1.00609 0.96259 0.98770 1.22642 1.00047 0.77757 0.99030 0.92222 0.77907 0.89472 0.89382 0.89641 0.90875 0.75572 0.90415 0.92692 0.91014 0.89481 0.91449 0.91752 0.92438 0.90803 0.90814 0.92832 0.91560 0.92352 0.91459 0.91535 0.91522 0.91922 0.91585 0.93817 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.04 10.69 21.45 0.23 -50.81 16 2 C 0.02 1.26 5.29 84.65 0.45 1.71 16 3 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -29.20 8.27 25.60 0.21 -28.99 16 8 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 9 C 0.23 11.42 0.87 -10.15 -0.01 11.41 16 10 O -0.59 -30.49 13.16 -148.98 -1.96 -32.45 16 11 C -0.11 -4.21 6.13 31.79 0.19 -4.01 16 12 C 0.11 3.65 6.15 86.73 0.53 4.19 16 13 N -0.63 -27.19 3.33 -829.74 -2.76 -29.95 16 14 C 0.71 30.24 8.49 179.06 1.52 31.76 16 15 O -0.65 -33.56 16.60 -4.01 -0.07 -33.63 16 16 N -0.73 -22.33 5.46 -478.53 -2.61 -24.94 16 17 C 0.14 3.55 6.06 86.38 0.52 4.08 16 18 C 0.06 1.04 5.80 71.98 0.42 1.46 16 19 O -0.40 -7.96 9.84 -148.98 -1.47 -9.43 16 20 C 0.10 1.38 2.11 28.74 0.06 1.44 16 21 C -0.12 -1.74 4.82 28.74 0.14 -1.60 16 22 C -0.11 -1.10 5.61 30.22 0.17 -0.93 16 23 C -0.12 -1.24 5.32 30.16 0.16 -1.08 16 24 C -0.12 -1.07 5.85 31.31 0.18 -0.89 16 25 C -0.12 -1.12 5.31 30.13 0.16 -0.96 16 26 C -0.14 -1.78 5.21 30.20 0.16 -1.62 16 27 C 0.13 6.59 5.38 86.86 0.47 7.06 16 28 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 29 H 0.37 20.39 7.56 -74.06 -0.56 19.83 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.09 3.15 8.03 -2.39 -0.02 3.14 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.41 10.45 7.46 -92.71 -0.69 9.75 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.01 8.07 -2.39 -0.02 0.99 16 38 H 0.09 1.11 7.50 -2.39 -0.02 1.10 16 39 H 0.07 0.81 7.09 -2.39 -0.02 0.79 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.97 7.46 -2.39 -0.02 0.95 16 42 H 0.07 0.67 6.97 -2.39 -0.02 0.65 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 0.66 6.63 -2.39 -0.02 0.64 16 45 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.58 6.63 -2.38 -0.02 0.56 16 50 H 0.06 0.94 6.98 -2.39 -0.02 0.93 16 51 H 0.07 0.88 7.41 -2.39 -0.02 0.86 16 52 H 0.04 2.57 7.33 -2.38 -0.02 2.55 16 53 H 0.04 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -68.99 405.42 -1.62 -70.61 By element: Atomic # 1 Polarization: 43.49 SS G_CDS: -0.35 Total: 43.14 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.34 Total: 23.00 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.14 Total: -105.70 kcal Atomic # 8 Polarization: -72.01 SS G_CDS: -3.49 Total: -75.51 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -68.99 -1.62 -70.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591963825.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.017 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds