Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00274 * 2 1 4 4 H 1.48499 * 109.47367 * 240.00128 * 3 2 1 5 5 H 1.48503 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47106 * 119.99667 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99880 * 0.27226 * 7 2 1 10 10 H 1.08996 * 109.49341 * 59.73032 * 9 7 2 11 11 C 1.53035 * 109.49445 * 179.78866 * 9 7 2 12 12 C 1.53044 * 109.53806 * 181.28597 * 11 9 7 13 13 C 1.53195 * 109.33646 * 298.68555 * 12 11 9 14 14 N 1.46923 * 108.77510 * 54.61898 * 13 12 11 15 15 C 1.34782 * 120.62808 * 126.36874 * 14 13 12 16 16 O 1.21586 * 119.99570 * 174.98737 * 15 14 13 17 17 N 1.34772 * 119.99840 * 354.98332 * 15 14 13 18 18 C 1.46504 * 119.99967 * 185.07407 * 17 15 14 19 19 C 1.53001 * 109.47197 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46621 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.46626 * 180.02562 * 20 19 18 22 22 C 1.42902 * 113.99897 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47187 * 179.97438 * 22 21 20 24 24 H 1.09003 * 110.80612 * 305.70220 * 23 22 21 25 25 C 1.54807 * 110.90720 * 182.06986 * 23 22 21 26 26 C 1.54097 * 104.19092 * 220.92367 * 25 23 22 27 27 O 1.43748 * 107.29305 * 357.97223 * 26 25 23 28 28 C 1.44426 * 106.99912 * 26.48672 * 27 26 25 29 29 C 1.46916 * 118.74038 * 306.38624 * 14 13 12 30 30 H 0.97001 * 119.99997 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46337 * 301.34157 * 11 9 7 32 32 H 1.09005 * 109.46014 * 61.30370 * 11 9 7 33 33 H 1.09005 * 109.49649 * 178.71916 * 12 11 9 34 34 H 1.09000 * 109.47057 * 58.63746 * 12 11 9 35 35 H 1.08992 * 109.58646 * 294.82460 * 13 12 11 36 36 H 1.09004 * 109.58061 * 174.40853 * 13 12 11 37 37 H 0.96998 * 120.00258 * 5.07727 * 17 15 14 38 38 H 1.09006 * 109.47241 * 300.00376 * 18 17 15 39 39 H 1.09003 * 109.47175 * 59.99800 * 18 17 15 40 40 H 1.08990 * 109.47139 * 299.99941 * 19 18 17 41 41 H 1.09002 * 109.46866 * 60.00650 * 19 18 17 42 42 H 1.08999 * 109.47243 * 299.99624 * 20 19 18 43 43 H 1.08994 * 109.47052 * 60.00456 * 20 19 18 44 44 H 1.08991 * 109.46892 * 299.99935 * 22 21 20 45 45 H 1.08999 * 109.46836 * 59.99627 * 22 21 20 46 46 H 1.09002 * 110.49053 * 339.60494 * 25 23 22 47 47 H 1.09000 * 110.48677 * 102.25031 * 25 23 22 48 48 H 1.08993 * 109.88031 * 117.39235 * 26 25 23 49 49 H 1.09001 * 109.88019 * 238.55011 * 26 25 23 50 50 H 1.08996 * 110.65136 * 201.48369 * 28 27 26 51 51 H 1.08998 * 110.60120 * 78.47339 * 28 27 26 52 52 H 1.08998 * 109.59329 * 293.82671 * 29 14 13 53 53 H 1.09001 * 109.70446 * 173.46384 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0073 10 1 0.6242 -2.5527 -0.8975 11 6 2.2449 -3.6628 -0.0118 12 6 1.4809 -4.9884 -0.0511 13 6 0.6038 -5.1056 1.1994 14 7 -0.2548 -3.9166 1.2879 15 6 -1.5915 -4.0422 1.4070 16 8 -2.2826 -3.0554 1.5709 17 7 -2.1619 -5.2617 1.3444 18 6 -3.6213 -5.3895 1.3621 19 6 -4.0047 -6.8685 1.2814 20 6 -5.5288 -7.0019 1.3005 21 8 -5.8869 -8.3833 1.2258 22 6 -7.2962 -8.6197 1.2362 23 6 -7.5616 -10.1242 1.1521 24 1 -7.0575 -10.5586 0.2887 25 6 -9.0814 -10.4155 1.1089 26 6 -9.2564 -11.6452 2.0210 27 8 -7.9487 -12.0259 2.4805 28 6 -7.1308 -10.8358 2.4599 29 6 0.3712 -2.5883 1.2437 30 1 -0.4850 0.8401 -0.0004 31 1 2.8881 -3.5877 -0.8887 32 1 2.8551 -3.6226 0.8905 33 1 2.1897 -5.8161 -0.0773 34 1 0.8520 -5.0190 -0.9408 35 1 1.2363 -5.1663 2.0850 36 1 -0.0159 -5.9995 1.1285 37 1 -1.6063 -6.0547 1.2877 38 1 -4.0122 -4.9630 2.2859 39 1 -4.0430 -4.8574 0.5093 40 1 -3.6138 -7.2953 0.3579 41 1 -3.5831 -7.4001 2.1345 42 1 -5.9194 -6.5752 2.2244 43 1 -5.9508 -6.4701 0.4478 44 1 -7.7238 -8.2260 2.1583 45 1 -7.7545 -8.1219 0.3817 46 1 -9.6437 -9.5675 1.4997 47 1 -9.3966 -10.6473 0.0915 48 1 -9.8880 -11.3889 2.8715 49 1 -9.7042 -12.4639 1.4576 50 1 -6.0731 -11.0967 2.4244 51 1 -7.3437 -10.2091 3.3259 52 1 0.9848 -2.4436 2.1328 53 1 -0.4005 -1.8195 1.2031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595517561.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -155.108196 kcal Electronic energy + Delta-G solvation = -29377.451659 eV Core-core repulsion = 25247.763404 eV Total energy + Delta-G solvation = -4129.688255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28029 -40.50504 -38.95315 -38.48025 -36.44674 -35.28681 -34.09744 -33.48157 -32.32297 -31.40025 -30.34575 -27.44288 -26.88359 -26.22089 -25.10193 -23.45814 -23.38844 -22.75456 -21.70933 -21.45910 -20.27821 -19.07215 -18.25054 -18.00255 -17.48830 -17.23348 -16.99172 -16.75181 -16.53116 -16.46761 -15.99869 -15.40853 -15.37960 -15.19357 -15.17926 -14.75991 -14.50613 -14.31697 -14.28122 -13.94847 -13.67784 -13.51571 -13.15806 -12.98584 -12.84021 -12.67776 -12.52272 -12.35352 -12.27738 -12.26119 -12.22706 -12.06775 -11.83303 -11.69970 -11.62144 -11.57361 -11.23217 -10.94452 -10.82777 -10.68186 -10.54712 -10.49985 -10.15963 -9.24818 -8.08952 -6.26286 1.41843 1.43559 1.51856 1.73858 2.25938 2.42971 2.53989 3.01669 3.12363 3.21615 3.57533 3.77311 3.91516 3.97827 4.04256 4.05544 4.15685 4.17932 4.23885 4.29918 4.33589 4.39361 4.49968 4.51918 4.56468 4.62112 4.65424 4.68249 4.75178 4.81674 4.82430 4.86152 4.86793 4.89076 5.03024 5.11431 5.11630 5.12843 5.20787 5.27962 5.29967 5.35030 5.54520 5.57999 5.66015 5.89926 5.90663 5.98844 6.18486 6.21212 6.37462 6.86729 7.14473 7.43673 7.68740 8.94234 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.001570 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.032116 B =17824.547521 C =18516.377002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.109 3.891 14 N -0.628 5.628 15 C 0.693 3.307 16 O -0.641 6.641 17 N -0.734 5.734 18 C 0.142 3.858 19 C -0.113 4.113 20 C 0.067 3.933 21 O -0.402 6.402 22 C 0.071 3.929 23 C -0.119 4.119 24 H 0.087 0.913 25 C -0.144 4.144 26 C 0.039 3.961 27 O -0.408 6.408 28 C 0.052 3.948 29 C 0.144 3.856 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.409 0.591 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.066 0.934 52 H 0.032 0.968 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.821 -24.383 3.221 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.004 0.996 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.013 4.013 14 N -0.364 5.364 15 C 0.394 3.606 16 O -0.523 6.523 17 N -0.395 5.395 18 C 0.018 3.982 19 C -0.151 4.151 20 C -0.010 4.010 21 O -0.322 6.322 22 C -0.006 4.006 23 C -0.138 4.138 24 H 0.105 0.895 25 C -0.182 4.182 26 C -0.037 4.037 27 O -0.328 6.328 28 C -0.024 4.024 29 C 0.021 3.979 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.248 0.752 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.085 0.915 49 H 0.111 0.889 50 H 0.110 0.890 51 H 0.084 0.916 52 H 0.051 0.949 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.279 -23.929 3.385 28.592 hybrid contribution 0.256 1.554 -0.202 1.587 sum -15.024 -22.375 3.183 27.138 Atomic orbital electron populations 1.70094 1.07456 1.27284 1.50555 1.25911 0.95551 1.02968 0.94598 0.85610 0.78251 0.78712 0.79091 1.19276 1.21542 1.19189 1.21504 0.93303 0.91527 1.51234 0.91924 1.18925 0.93118 0.93822 0.92313 0.99623 1.21504 0.97630 0.94218 1.00896 1.21912 0.98999 0.98192 0.97277 1.21878 0.93571 0.86675 0.99158 1.47687 1.04131 1.08986 1.75592 1.16198 0.82426 0.83921 0.78037 1.90874 1.63093 1.39151 1.59204 1.45037 1.07884 1.06168 1.80365 1.20999 0.78849 0.96894 1.01468 1.21500 0.95317 0.93587 1.04704 1.22327 0.94922 0.82360 1.01395 1.87813 1.23696 1.25233 1.95414 1.22538 0.81502 0.94999 1.01543 1.22683 0.96935 0.94702 0.99438 0.89465 1.22938 0.94392 0.98840 1.02038 1.23345 0.85005 0.97776 0.97606 1.88863 1.23368 1.32780 1.87785 1.23658 0.96117 0.85996 0.96643 1.21560 0.96745 0.81970 0.97636 0.93181 0.93000 0.92441 0.87716 0.93132 0.90261 0.88039 0.75181 0.92436 0.93130 0.89839 0.89431 0.92104 0.92410 0.91984 0.91819 0.88988 0.88895 0.91473 0.88877 0.88987 0.91601 0.94925 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.48 11.40 21.45 0.24 -56.24 16 2 C 0.01 0.52 5.31 84.66 0.45 0.97 16 3 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -29.87 8.56 25.60 0.22 -29.65 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 10 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 11 C -0.10 -4.03 5.11 30.62 0.16 -3.87 16 12 C -0.13 -3.63 6.08 30.67 0.19 -3.44 16 13 C 0.11 3.04 6.43 86.36 0.56 3.60 16 14 N -0.63 -25.55 2.97 -836.94 -2.49 -28.04 16 15 C 0.69 28.95 8.30 179.05 1.49 30.43 16 16 O -0.64 -34.07 15.79 -3.99 -0.06 -34.13 16 17 N -0.73 -20.98 5.47 -478.52 -2.62 -23.60 16 18 C 0.14 3.47 5.68 86.38 0.49 3.96 16 19 C -0.11 -1.82 5.70 30.60 0.17 -1.65 16 20 C 0.07 1.00 5.94 71.98 0.43 1.42 16 21 O -0.40 -6.40 10.25 -148.98 -1.53 -7.93 16 22 C 0.07 0.81 5.27 71.98 0.38 1.19 16 23 C -0.12 -1.37 3.39 -9.49 -0.03 -1.40 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 C -0.14 -1.13 6.60 31.58 0.21 -0.92 16 26 C 0.04 0.41 7.70 72.35 0.56 0.97 16 27 O -0.41 -7.12 11.52 -148.98 -1.72 -8.84 16 28 C 0.05 0.74 7.09 72.67 0.52 1.25 16 29 C 0.14 7.34 5.39 86.36 0.47 7.80 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 1.99 5.57 -2.39 -0.01 1.98 16 37 H 0.41 8.58 5.93 -92.71 -0.55 8.04 16 38 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.60 8.05 -2.39 -0.02 0.58 16 45 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 0.49 7.86 -2.39 -0.02 0.47 16 47 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.07 0.85 7.98 -2.39 -0.02 0.83 16 52 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.07 4.56 5.17 -2.39 -0.01 4.54 16 Total: -1.00 -78.45 414.34 0.40 -78.05 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.33 Total: 21.50 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 6.21 Total: 12.56 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -4.86 Total: -107.87 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -3.31 Total: -50.89 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.45 0.40 -78.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595517561.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.058 kcal (2) G-P(sol) polarization free energy of solvation -78.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds