Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00309 * 2 1 4 4 H 1.48504 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47664 * 300.00567 * 3 2 1 6 6 H 1.48511 * 109.47087 * 60.00761 * 3 2 1 7 7 C 1.37877 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00513 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.49761 * 60.06244 * 9 7 2 11 11 C 1.53036 * 109.50232 * 180.16206 * 9 7 2 12 12 C 1.53036 * 109.54065 * 181.31546 * 11 9 7 13 13 C 1.53625 * 109.24452 * 298.51395 * 12 11 9 14 14 N 1.46933 * 108.54209 * 54.85170 * 13 12 11 15 15 C 1.34780 * 120.62734 * 126.37062 * 14 13 12 16 16 O 1.21579 * 119.99948 * 184.94034 * 15 14 13 17 17 N 1.34773 * 119.99901 * 4.94569 * 15 14 13 18 18 C 1.46503 * 119.99636 * 175.01651 * 17 15 14 19 19 C 1.53005 * 109.46952 * 179.97438 * 18 17 15 20 20 C 1.52996 * 109.47225 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47557 * 180.02562 * 20 19 18 22 22 C 1.42897 * 114.00349 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47265 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.89373 * 305.51133 * 23 22 21 25 25 C 1.54387 * 109.83174 * 184.58624 * 23 22 21 26 26 C 1.55304 * 102.25012 * 219.12992 * 25 23 22 27 27 C 1.54945 * 100.94423 * 34.12872 * 26 25 23 28 28 O 1.43239 * 109.83311 * 66.44737 * 23 22 21 29 29 C 1.46919 * 118.73835 * 306.09916 * 14 13 12 30 30 H 0.97003 * 119.99611 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.45733 * 301.33790 * 11 9 7 32 32 H 1.09005 * 109.45948 * 61.29498 * 11 9 7 33 33 H 1.09003 * 109.49802 * 58.58656 * 12 11 9 34 34 H 1.09000 * 109.50286 * 178.68522 * 12 11 9 35 35 H 1.09001 * 109.74035 * 295.11679 * 13 12 11 36 36 H 1.08997 * 109.66766 * 174.54820 * 13 12 11 37 37 H 0.97000 * 120.00342 * 355.01165 * 17 15 14 38 38 H 1.08993 * 109.47705 * 59.99471 * 18 17 15 39 39 H 1.09004 * 109.46946 * 299.99105 * 18 17 15 40 40 H 1.09002 * 109.47506 * 59.99824 * 19 18 17 41 41 H 1.09000 * 109.46949 * 299.99863 * 19 18 17 42 42 H 1.09003 * 109.47282 * 59.99748 * 20 19 18 43 43 H 1.09009 * 109.47217 * 300.00252 * 20 19 18 44 44 H 1.09002 * 109.47537 * 59.99479 * 22 21 20 45 45 H 1.09006 * 109.46754 * 299.99821 * 22 21 20 46 46 H 1.08999 * 110.84610 * 337.31637 * 25 23 22 47 47 H 1.08991 * 110.84976 * 100.93550 * 25 23 22 48 48 H 1.09009 * 111.12140 * 276.20988 * 26 25 23 49 49 H 1.08999 * 111.16253 * 152.06594 * 26 25 23 50 50 H 1.09009 * 110.30639 * 204.64015 * 27 26 25 51 51 H 1.09002 * 110.39076 * 82.51860 * 27 26 25 52 52 H 1.09005 * 109.58958 * 173.64696 * 29 14 13 53 53 H 1.09003 * 109.58538 * 294.07189 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3963 1.2127 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5577 -0.8908 11 6 2.2448 -3.6629 0.0029 12 6 1.4809 -4.9886 -0.0302 13 6 0.6034 -5.0988 1.2260 14 7 -0.2558 -3.9093 1.3017 15 6 -1.5924 -4.0342 1.4216 16 8 -2.3003 -3.0462 1.3929 17 7 -2.1442 -5.2544 1.5733 18 6 -3.5838 -5.3826 1.8129 19 6 -3.9488 -6.8624 1.9470 20 6 -5.4521 -6.9963 2.1978 21 8 -5.7929 -8.3783 2.3237 22 6 -7.1820 -8.6152 2.5606 23 6 -7.4301 -10.1204 2.6772 24 1 -7.0437 -10.6295 1.7941 25 6 -8.9432 -10.3925 2.8182 26 6 -8.9752 -11.5461 3.8575 27 6 -7.7676 -11.1694 4.7523 28 8 -6.7874 -10.6294 3.8517 29 6 0.3704 -2.5812 1.2503 30 1 -0.4850 0.8401 0.0004 31 1 2.8888 -3.5929 -0.8737 32 1 2.8541 -3.6174 0.9056 33 1 0.8524 -5.0242 -0.9201 34 1 2.1895 -5.8165 -0.0513 35 1 1.2350 -5.1504 2.1129 36 1 -0.0159 -5.9936 1.1635 37 1 -1.5883 -6.0477 1.5239 38 1 -4.1315 -4.9480 0.9767 39 1 -3.8474 -4.8583 2.7315 40 1 -3.4012 -7.2974 2.7831 41 1 -3.6853 -7.3863 1.0282 42 1 -6.0001 -6.5612 1.3620 43 1 -5.7152 -6.4723 3.1168 44 1 -7.7656 -8.2142 1.7319 45 1 -7.4814 -8.1244 3.4868 46 1 -9.4617 -9.5126 3.1992 47 1 -9.3697 -10.7143 1.8682 48 1 -8.8216 -12.5123 3.3767 49 1 -9.9043 -11.5368 4.4272 50 1 -7.3754 -12.0557 5.2512 51 1 -8.0593 -10.4198 5.4879 52 1 -0.4028 -1.8142 1.2039 53 1 0.9834 -2.4317 2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596102722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -154.377226 kcal Electronic energy + Delta-G solvation = -29387.158050 eV Core-core repulsion = 25257.501492 eV Total energy + Delta-G solvation = -4129.656558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27798 -40.54128 -38.88667 -38.44241 -36.40489 -35.27419 -33.65034 -33.17744 -32.68428 -31.50698 -31.06688 -27.40839 -26.85892 -26.13589 -25.07400 -23.46077 -22.81504 -22.62207 -21.96698 -21.67991 -20.30189 -19.05017 -18.25712 -18.13517 -17.65496 -17.17001 -17.02190 -16.93085 -16.55586 -16.34288 -15.93148 -15.40952 -15.24166 -15.17972 -15.06686 -14.63555 -14.49485 -14.28423 -14.22284 -13.86501 -13.63209 -13.50226 -13.18109 -12.95908 -12.89590 -12.66592 -12.63497 -12.27223 -12.22357 -12.19501 -12.16051 -12.12992 -11.96415 -11.83662 -11.70456 -11.61610 -11.22101 -10.94426 -10.81298 -10.59382 -10.51165 -10.47608 -10.16989 -9.24634 -8.08365 -6.26105 1.40612 1.42045 1.54373 1.74503 2.24124 2.42978 2.56271 2.93811 3.10743 3.21503 3.56445 3.81198 3.95221 3.95370 4.03550 4.05797 4.15338 4.17076 4.18609 4.29470 4.32594 4.40155 4.47820 4.48814 4.53658 4.61936 4.64144 4.68111 4.74737 4.80993 4.82184 4.86180 4.90238 4.94612 5.03942 5.09203 5.10166 5.12208 5.25477 5.28024 5.29231 5.34230 5.53648 5.58493 5.66727 5.90767 5.99648 6.06332 6.18156 6.27022 6.37683 6.87530 7.14051 7.43915 7.68786 8.94943 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.001570 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.610396 B =17832.149071 C =18508.719192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.036 3.964 10 H -0.016 1.016 11 C -0.104 4.104 12 C -0.126 4.126 13 C 0.109 3.891 14 N -0.628 5.628 15 C 0.692 3.308 16 O -0.640 6.640 17 N -0.734 5.734 18 C 0.144 3.856 19 C -0.113 4.113 20 C 0.066 3.934 21 O -0.401 6.401 22 C 0.048 3.952 23 C 0.076 3.924 24 H 0.082 0.918 25 C -0.144 4.144 26 C -0.150 4.150 27 C 0.036 3.964 28 O -0.402 6.402 29 C 0.143 3.857 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.409 0.591 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.075 0.925 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 -26.365 7.332 31.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.017 3.983 10 H 0.002 0.998 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.013 4.013 14 N -0.364 5.364 15 C 0.393 3.607 16 O -0.522 6.522 17 N -0.395 5.395 18 C 0.020 3.980 19 C -0.151 4.151 20 C -0.011 4.011 21 O -0.320 6.320 22 C -0.028 4.028 23 C 0.018 3.982 24 H 0.100 0.900 25 C -0.181 4.181 26 C -0.187 4.187 27 C -0.040 4.040 28 O -0.322 6.322 29 C 0.020 3.980 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.109 0.891 51 H 0.080 0.920 52 H 0.093 0.907 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.555 -25.694 7.357 31.438 hybrid contribution 0.144 1.406 -0.169 1.423 sum -16.411 -24.288 7.189 30.181 Atomic orbital electron populations 1.70125 1.07463 1.27112 1.50664 1.25924 0.95551 1.03006 0.94655 0.85493 0.79300 0.79404 0.77381 1.18328 1.20931 1.20864 1.21556 0.93299 0.91486 1.51006 0.91898 1.18934 0.93123 0.93878 0.92361 0.99780 1.21499 0.97608 0.94158 1.00935 1.21983 0.98978 0.98245 0.97180 1.21969 0.93559 0.86626 0.99153 1.47695 1.04037 1.09020 1.75656 1.16201 0.82531 0.83914 0.78005 1.90884 1.61825 1.39076 1.60389 1.45048 1.09774 1.06111 1.78526 1.20980 0.79575 0.96660 1.00835 1.21489 0.95561 0.93753 1.04258 1.22340 0.95345 0.82482 1.00951 1.87870 1.25799 1.25057 1.93321 1.23108 0.82424 0.96509 1.00807 1.22910 0.93839 0.92293 0.89157 0.90019 1.23134 0.93251 0.99933 1.01821 1.23270 0.99329 0.99030 0.97088 1.23620 0.88970 0.98590 0.92857 1.88516 1.33653 1.79288 1.30731 1.21577 0.96790 0.82007 0.97657 0.93215 0.93026 0.92314 0.93310 0.87714 0.90067 0.88176 0.75219 0.92816 0.92556 0.89869 0.89746 0.92077 0.92610 0.90503 0.92835 0.89313 0.87969 0.89841 0.87883 0.89111 0.91953 0.90660 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.09 11.39 21.45 0.24 -56.84 16 2 C 0.01 0.45 5.30 84.66 0.45 0.90 16 3 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 10 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 11 C -0.10 -4.09 5.10 30.62 0.16 -3.93 16 12 C -0.13 -3.76 6.10 30.82 0.19 -3.57 16 13 C 0.11 3.14 6.42 86.51 0.56 3.69 16 14 N -0.63 -26.11 2.97 -836.06 -2.48 -28.59 16 15 C 0.69 29.67 8.30 179.05 1.49 31.15 16 16 O -0.64 -34.79 15.77 -3.97 -0.06 -34.85 16 17 N -0.73 -21.98 5.47 -478.53 -2.62 -24.59 16 18 C 0.14 3.74 5.68 86.38 0.49 4.23 16 19 C -0.11 -2.12 5.70 30.59 0.17 -1.95 16 20 C 0.07 1.19 5.94 71.98 0.43 1.62 16 21 O -0.40 -8.36 10.33 -146.53 -1.51 -9.87 16 22 C 0.05 0.74 5.47 71.98 0.39 1.13 16 23 C 0.08 1.09 3.81 31.06 0.12 1.21 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 C -0.14 -1.07 6.54 31.86 0.21 -0.86 16 26 C -0.15 -1.00 7.16 32.05 0.23 -0.77 16 27 C 0.04 0.42 7.78 72.65 0.56 0.98 16 28 O -0.40 -7.80 11.00 -146.53 -1.61 -9.41 16 29 C 0.14 7.36 5.41 86.36 0.47 7.83 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.10 2.09 5.64 -2.39 -0.01 2.08 16 37 H 0.41 9.20 5.96 -92.71 -0.55 8.64 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.09 0.52 7.85 -2.39 -0.02 0.50 16 47 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 48 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 49 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.08 4.67 5.11 -2.38 -0.01 4.66 16 53 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -81.13 414.89 0.41 -80.72 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.32 Total: 22.64 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.10 Total: 13.69 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -4.85 Total: -110.02 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -3.19 Total: -54.13 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -81.13 0.41 -80.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596102722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.661 kcal (2) G-P(sol) polarization free energy of solvation -81.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds