Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48495 * 109.47444 * 274.92808 * 3 2 1 5 5 H 1.48500 * 109.47274 * 34.93249 * 3 2 1 6 6 H 1.48502 * 109.47011 * 154.92912 * 3 2 1 7 7 C 1.37871 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00420 * 5.05465 * 7 2 1 9 9 C 1.50707 * 119.99790 * 184.77568 * 7 2 1 10 10 H 1.08998 * 109.49677 * 325.47174 * 9 7 2 11 11 C 1.53042 * 109.49395 * 205.40382 * 9 7 2 12 12 C 1.53039 * 109.53343 * 178.68378 * 11 9 7 13 13 C 1.53189 * 109.31692 * 61.36663 * 12 11 9 14 14 N 1.46930 * 108.77465 * 305.36637 * 13 12 11 15 15 C 1.34767 * 120.62773 * 233.58491 * 14 13 12 16 16 O 1.21595 * 119.99911 * 185.06881 * 15 14 13 17 17 N 1.34771 * 120.00356 * 5.06352 * 15 14 13 18 18 C 1.46507 * 120.00274 * 174.86136 * 17 15 14 19 19 C 1.53001 * 109.47167 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.46777 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.46780 * 179.97438 * 20 19 18 22 22 C 1.42901 * 114.00106 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47642 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.82291 * 305.56905 * 23 22 21 25 25 C 1.54378 * 109.83351 * 184.59244 * 23 22 21 26 26 C 1.55312 * 102.24965 * 219.12774 * 25 23 22 27 27 C 1.54945 * 100.93976 * 34.13378 * 26 25 23 28 28 O 1.43238 * 109.83010 * 66.45072 * 23 22 21 29 29 C 1.46927 * 118.73676 * 53.60641 * 14 13 12 30 30 H 0.96995 * 119.99971 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46568 * 298.70261 * 11 9 7 32 32 H 1.09000 * 109.45918 * 58.66596 * 11 9 7 33 33 H 1.09008 * 109.49775 * 181.32388 * 12 11 9 34 34 H 1.09004 * 109.49860 * 301.38089 * 12 11 9 35 35 H 1.09002 * 109.57987 * 65.14845 * 13 12 11 36 36 H 1.08992 * 109.58875 * 185.57519 * 13 12 11 37 37 H 0.97002 * 120.00577 * 354.86419 * 17 15 14 38 38 H 1.09001 * 109.47169 * 300.00393 * 18 17 15 39 39 H 1.09006 * 109.46824 * 60.00238 * 18 17 15 40 40 H 1.09001 * 109.47255 * 300.00167 * 19 18 17 41 41 H 1.08998 * 109.47318 * 60.00001 * 19 18 17 42 42 H 1.08996 * 109.47276 * 299.99507 * 20 19 18 43 43 H 1.08994 * 109.47493 * 60.00298 * 20 19 18 44 44 H 1.08999 * 109.47331 * 300.00324 * 22 21 20 45 45 H 1.09007 * 109.46691 * 60.00276 * 22 21 20 46 46 H 1.08997 * 110.84966 * 337.31473 * 25 23 22 47 47 H 1.09004 * 110.85044 * 100.94350 * 25 23 22 48 48 H 1.08989 * 111.12779 * 276.20978 * 26 25 23 49 49 H 1.09001 * 111.15760 * 152.06185 * 26 25 23 50 50 H 1.09003 * 110.30628 * 204.63415 * 27 26 25 51 51 H 1.08999 * 110.39567 * 82.51642 * 27 26 25 52 52 H 1.08998 * 109.58328 * 186.60903 * 29 14 13 53 53 H 1.08994 * 109.59105 * 66.17651 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3925 2.1066 -1.3948 5 1 1.5026 2.6203 0.8017 6 1 3.5949 1.4124 0.5933 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0815 9 6 3.5077 -1.1962 0.1092 10 1 3.9112 -0.3270 -0.4101 11 6 4.0636 -2.4736 -0.5244 12 6 5.5919 -2.4614 -0.4439 13 6 6.0216 -2.4243 1.0260 14 7 5.3738 -1.2787 1.6793 15 6 6.1050 -0.3682 2.3521 16 8 5.5508 0.5235 2.9655 17 7 7.4504 -0.4461 2.3452 18 6 8.2484 0.6052 2.9810 19 6 9.7355 0.2775 2.8317 20 6 10.5687 1.3752 3.4963 21 8 11.9576 1.0688 3.3574 22 6 12.8281 2.0368 3.9467 23 6 14.2821 1.6085 3.7394 24 1 14.4276 0.5975 4.1202 25 6 15.2258 2.5867 4.4714 26 6 16.4049 2.7192 3.4692 27 6 15.6555 2.6101 2.1174 28 8 14.6080 1.6540 2.3453 29 6 3.9136 -1.1448 1.5855 30 1 -0.4850 0.8400 -0.0004 31 1 3.6788 -3.3417 0.0106 32 1 3.7554 -2.5248 -1.5687 33 1 5.9883 -3.3603 -0.9163 34 1 5.9763 -1.5806 -0.9582 35 1 5.7160 -3.3470 1.5194 36 1 7.1043 -2.3158 1.0876 37 1 7.8906 -1.1983 1.9192 38 1 8.0375 1.5613 2.5019 39 1 7.9936 0.6650 4.0392 40 1 9.9467 -0.6786 3.3105 41 1 9.9900 0.2180 1.7736 42 1 10.3576 2.3315 3.0179 43 1 10.3141 1.4342 4.5545 44 1 12.6641 3.0066 3.4770 45 1 12.6201 2.1103 5.0143 46 1 14.7402 3.5498 4.6285 47 1 15.5659 2.1636 5.4166 48 1 17.1172 1.9032 3.5905 49 1 16.8983 3.6861 3.5679 50 1 16.3300 2.2540 1.3387 51 1 15.2328 3.5753 1.8384 52 1 3.6056 -0.1921 2.0161 53 1 3.4362 -1.9632 2.1244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596102723.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = -155.396159 kcal Electronic energy + Delta-G solvation = -29506.292464 eV Core-core repulsion = 25376.591723 eV Total energy + Delta-G solvation = -4129.700742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41565 -40.55170 -38.93761 -38.53878 -36.47850 -35.26592 -33.78339 -33.19663 -32.75121 -32.04508 -31.14443 -27.44846 -26.92481 -26.19132 -25.11300 -23.41820 -22.84793 -22.63407 -21.98040 -21.63887 -20.37282 -19.29595 -18.72212 -18.17298 -17.71814 -17.21187 -17.06989 -16.94206 -16.59942 -16.32426 -15.95961 -15.46694 -15.36401 -15.23113 -15.20492 -14.82206 -14.64377 -14.40165 -14.25568 -13.96896 -13.77311 -13.61581 -13.21373 -13.05079 -12.98452 -12.79315 -12.67216 -12.55524 -12.22586 -12.17906 -12.14683 -12.02522 -11.97781 -11.78698 -11.71443 -11.58796 -11.38236 -11.05861 -10.97906 -10.72484 -10.60492 -10.48594 -10.24556 -9.38928 -8.35030 -6.36768 1.24361 1.32537 1.45791 1.62532 2.13858 2.29383 2.52702 2.90970 3.01060 3.07460 3.55484 3.79800 3.93841 3.94271 3.99641 4.02098 4.12867 4.16285 4.16503 4.18518 4.30130 4.38851 4.46650 4.47067 4.49451 4.52137 4.60022 4.63253 4.67122 4.69683 4.77203 4.79964 4.89227 4.93559 4.97917 5.02933 5.03078 5.07093 5.08991 5.14912 5.24521 5.24743 5.44956 5.47206 5.60454 5.64434 5.72952 6.03865 6.05284 6.25997 6.30407 6.72374 7.02063 7.30060 7.55699 8.81142 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.001724 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.203261 B =16239.193297 C =16680.472509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.025 3.975 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.046 0.954 9 C 0.004 3.996 10 H 0.020 0.980 11 C -0.100 4.100 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.629 5.629 15 C 0.695 3.305 16 O -0.644 6.644 17 N -0.733 5.733 18 C 0.143 3.857 19 C -0.114 4.114 20 C 0.065 3.935 21 O -0.401 6.401 22 C 0.048 3.952 23 C 0.075 3.925 24 H 0.083 0.917 25 C -0.144 4.144 26 C -0.150 4.150 27 C 0.035 3.965 28 O -0.402 6.402 29 C 0.141 3.859 30 H 0.266 0.734 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.411 0.589 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.062 0.938 52 H 0.044 0.956 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.249 1.840 8.041 38.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.548 4.548 8 H 0.064 0.936 9 C -0.016 4.016 10 H 0.039 0.961 11 C -0.138 4.138 12 C -0.166 4.166 13 C -0.012 4.012 14 N -0.365 5.365 15 C 0.397 3.603 16 O -0.526 6.526 17 N -0.393 5.393 18 C 0.018 3.982 19 C -0.152 4.152 20 C -0.012 4.012 21 O -0.321 6.321 22 C -0.028 4.028 23 C 0.018 3.982 24 H 0.101 0.899 25 C -0.181 4.181 26 C -0.187 4.187 27 C -0.041 4.041 28 O -0.322 6.322 29 C 0.018 3.982 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.250 0.750 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.121 0.879 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.108 0.892 51 H 0.080 0.920 52 H 0.062 0.938 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 36.685 2.303 8.216 37.664 hybrid contribution -0.591 1.075 0.004 1.227 sum 36.094 3.378 8.219 37.172 Atomic orbital electron populations 1.70022 1.07775 1.27846 1.52377 1.25726 0.95218 1.02120 0.94279 0.86046 0.79838 0.80377 0.78456 1.19247 1.21763 1.18309 1.21250 0.91283 0.93185 1.49129 0.93600 1.19455 0.93913 0.96280 0.91923 0.96140 1.21425 0.95118 0.97000 1.00253 1.21953 0.95433 1.03314 0.95886 1.21923 0.97798 0.88233 0.93252 1.47638 1.07605 1.26413 1.54806 1.16150 0.82452 0.81900 0.79843 1.90858 1.72113 1.39335 1.50332 1.45052 1.03197 1.28430 1.62585 1.21009 0.89549 0.89880 0.97713 1.21495 0.90774 1.00037 1.02854 1.22349 0.80791 0.97718 1.00339 1.87874 1.16117 1.48343 1.79716 1.23104 0.89798 0.91765 0.98158 1.22915 0.92551 1.00720 0.82024 0.89928 1.23134 0.95193 0.99870 0.99932 1.23271 0.97796 1.04523 0.93159 1.23615 0.88887 0.92725 0.98824 1.88517 1.56532 1.61845 1.25324 1.21818 0.77050 1.00248 0.99098 0.92524 0.92410 0.92720 0.87568 0.92502 0.89825 0.87803 0.74976 0.92953 0.92018 0.89379 0.90173 0.92889 0.91813 0.92980 0.90370 0.89339 0.87900 0.89812 0.87929 0.89153 0.92018 0.93755 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 2 C 0.02 1.49 5.47 84.65 0.46 1.95 16 3 Si 0.93 48.10 26.44 68.60 1.81 49.92 16 4 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 6 H -0.26 -13.64 5.79 99.48 0.58 -13.06 16 7 C -0.51 -29.03 8.87 25.60 0.23 -28.80 16 8 H 0.05 2.82 8.05 -2.91 -0.02 2.80 16 9 C 0.00 0.19 1.78 -11.46 -0.02 0.17 16 10 H 0.02 1.00 5.71 -2.39 -0.01 0.99 16 11 C -0.10 -3.62 5.15 30.62 0.16 -3.47 16 12 C -0.13 -3.29 6.08 30.67 0.19 -3.11 16 13 C 0.11 2.67 6.43 86.36 0.56 3.22 16 14 N -0.63 -22.66 2.97 -836.93 -2.49 -25.15 16 15 C 0.70 26.03 8.29 179.06 1.49 27.52 16 16 O -0.64 -30.76 15.79 -4.02 -0.06 -30.82 16 17 N -0.73 -18.91 5.47 -478.52 -2.62 -21.53 16 18 C 0.14 3.23 5.68 86.38 0.49 3.72 16 19 C -0.11 -1.85 5.70 30.59 0.17 -1.68 16 20 C 0.07 1.05 5.94 71.98 0.43 1.48 16 21 O -0.40 -7.71 10.33 -146.53 -1.51 -9.23 16 22 C 0.05 0.68 5.47 71.98 0.39 1.07 16 23 C 0.08 1.01 3.81 31.06 0.12 1.13 16 24 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 25 C -0.14 -0.94 6.54 31.86 0.21 -0.73 16 26 C -0.15 -0.91 7.16 32.05 0.23 -0.68 16 27 C 0.04 0.40 7.78 72.65 0.56 0.96 16 28 O -0.40 -7.51 11.00 -146.53 -1.61 -9.12 16 29 C 0.14 6.38 5.41 86.36 0.47 6.85 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 1.72 5.57 -2.39 -0.01 1.70 16 37 H 0.41 7.62 5.93 -92.71 -0.55 7.07 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.09 0.44 7.85 -2.39 -0.02 0.42 16 47 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.04 2.33 5.57 -2.39 -0.01 2.31 16 53 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -81.52 411.32 0.15 -81.38 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.20 Total: 14.28 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.13 Total: 9.60 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.80 Total: -106.00 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -3.19 Total: -49.17 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.81 Total: 49.92 kcal Total: -81.52 0.15 -81.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596102723.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.018 kcal (2) G-P(sol) polarization free energy of solvation -81.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds