Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99739 * 2 1 4 4 H 1.48498 * 109.46940 * 274.92701 * 3 2 1 5 5 H 1.48497 * 109.47065 * 34.92686 * 3 2 1 6 6 H 1.48499 * 109.46916 * 154.92613 * 3 2 1 7 7 C 1.37872 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00093 * 5.06272 * 7 2 1 9 9 C 1.50699 * 120.00164 * 184.78303 * 7 2 1 10 10 H 1.09005 * 109.49786 * 325.35124 * 9 7 2 11 11 C 1.53043 * 109.50012 * 205.25400 * 9 7 2 12 12 C 1.53035 * 109.53890 * 178.68067 * 11 9 7 13 13 C 1.53196 * 109.31136 * 61.36926 * 12 11 9 14 14 N 1.46932 * 108.77540 * 305.36317 * 13 12 11 15 15 C 1.34774 * 120.63012 * 233.59120 * 14 13 12 16 16 O 1.21583 * 119.99878 * 185.09242 * 15 14 13 17 17 N 1.34774 * 120.00202 * 5.08774 * 15 14 13 18 18 C 1.46502 * 120.00291 * 174.86075 * 17 15 14 19 19 C 1.52991 * 109.47459 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47316 * 179.97438 * 19 18 17 21 21 O 1.42906 * 109.47300 * 179.97438 * 20 19 18 22 22 C 1.42897 * 113.99939 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46974 * 180.02562 * 22 21 20 24 24 H 1.09002 * 110.27374 * 55.63693 * 23 22 21 25 25 C 1.54945 * 110.30879 * 177.83586 * 23 22 21 26 26 C 1.55303 * 100.94310 * 155.36141 * 25 23 22 27 27 C 1.54387 * 102.25156 * 325.86308 * 26 25 23 28 28 O 1.43245 * 107.58828 * 21.35908 * 27 26 25 29 29 C 1.46918 * 118.73792 * 53.60513 * 14 13 12 30 30 H 0.96993 * 120.00336 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46085 * 298.70366 * 11 9 7 32 32 H 1.08999 * 109.45798 * 58.66331 * 11 9 7 33 33 H 1.09006 * 109.50014 * 301.41929 * 12 11 9 34 34 H 1.09000 * 109.49944 * 181.31527 * 12 11 9 35 35 H 1.09007 * 109.58695 * 185.58085 * 13 12 11 36 36 H 1.08993 * 109.59035 * 65.14913 * 13 12 11 37 37 H 0.96997 * 120.00113 * 354.86031 * 17 15 14 38 38 H 1.08999 * 109.47301 * 300.00539 * 18 17 15 39 39 H 1.09005 * 109.46685 * 59.99704 * 18 17 15 40 40 H 1.08996 * 109.47625 * 300.00123 * 19 18 17 41 41 H 1.09005 * 109.47319 * 60.00209 * 19 18 17 42 42 H 1.08991 * 109.47214 * 300.00254 * 20 19 18 43 43 H 1.09000 * 109.46621 * 60.00500 * 20 19 18 44 44 H 1.09002 * 109.47102 * 300.00256 * 22 21 20 45 45 H 1.09003 * 109.47101 * 60.00601 * 22 21 20 46 46 H 1.09003 * 111.12341 * 273.27839 * 25 23 22 47 47 H 1.09002 * 111.12756 * 37.44055 * 25 23 22 48 48 H 1.08998 * 110.84765 * 207.67520 * 26 25 23 49 49 H 1.08998 * 111.02529 * 84.12952 * 26 25 23 50 50 H 1.08991 * 109.83243 * 261.84583 * 27 26 25 51 51 H 1.09000 * 109.82788 * 140.86914 * 27 26 25 52 52 H 1.09001 * 109.59097 * 186.60398 * 29 14 13 53 53 H 1.09004 * 109.70249 * 66.25267 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3924 2.1066 -1.3949 5 1 1.5025 2.6204 0.8016 6 1 3.5948 1.4125 0.5933 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0816 9 6 3.5076 -1.1962 0.1094 10 1 3.9114 -0.3280 -0.4117 11 6 4.0636 -2.4752 -0.5209 12 6 5.5917 -2.4631 -0.4403 13 6 6.0212 -2.4223 1.0296 14 7 5.3735 -1.2749 1.6799 15 6 6.1049 -0.3628 2.3505 16 8 5.5508 0.5302 2.9618 17 7 7.4503 -0.4406 2.3434 18 6 8.2484 0.6122 2.9766 19 6 9.7353 0.2837 2.8290 20 6 10.5687 1.3836 3.4897 21 8 11.9576 1.0764 3.3523 22 6 12.8280 2.0458 3.9392 23 6 14.2821 1.6170 3.7326 24 1 14.4831 1.4619 2.6725 25 6 15.2449 2.6825 4.3144 26 6 16.5055 1.8196 4.5939 27 6 15.8905 0.4623 4.9977 28 8 14.5582 0.4176 4.4732 29 6 3.9135 -1.1410 1.5855 30 1 -0.4850 0.8400 -0.0004 31 1 3.6784 -3.3419 0.0163 32 1 3.7554 -2.5291 -1.5651 33 1 5.9764 -1.5833 -0.9562 34 1 5.9880 -3.3633 -0.9102 35 1 7.1041 -2.3137 1.0911 36 1 5.7156 -3.3436 1.5254 37 1 7.8904 -1.1938 1.9192 38 1 8.0373 1.5672 2.4954 39 1 7.9936 0.6745 4.0346 40 1 9.9460 -0.6711 3.3105 41 1 9.9903 0.2211 1.7710 42 1 10.3579 2.3382 3.0077 43 1 10.3138 1.4465 4.5476 44 1 12.6645 3.0144 3.4667 45 1 12.6197 2.1224 5.0064 46 1 15.4568 3.4620 3.5825 47 1 14.8485 3.1089 5.2359 48 1 17.0895 2.2398 5.4127 49 1 17.1161 1.7171 3.6968 50 1 15.8632 0.3773 6.0840 51 1 16.4811 -0.3512 4.5766 52 1 3.6055 -0.1871 2.0137 53 1 3.4339 -1.9564 2.1271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596102725.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -155.252777 kcal Electronic energy + Delta-G solvation = -29454.314429 eV Core-core repulsion = 25324.619905 eV Total energy + Delta-G solvation = -4129.694524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41344 -40.50341 -38.95195 -38.54911 -36.48122 -35.26404 -33.78401 -33.19327 -32.76277 -32.05010 -31.18505 -27.44105 -26.91915 -26.15800 -25.09661 -23.41582 -22.86210 -22.55278 -22.08435 -21.63892 -20.37027 -19.29325 -18.72005 -18.15039 -17.69630 -17.23134 -17.03187 -16.93138 -16.58012 -16.36606 -15.90754 -15.47071 -15.45306 -15.24786 -15.14686 -14.82183 -14.73771 -14.39000 -14.24246 -14.01713 -13.78201 -13.48646 -13.29197 -13.04479 -12.96832 -12.78427 -12.67875 -12.54757 -12.29166 -12.17624 -12.08483 -12.02218 -11.97761 -11.78467 -11.69455 -11.58394 -11.37967 -11.05551 -10.97647 -10.72172 -10.59823 -10.48139 -10.24147 -9.38686 -8.34667 -6.36545 1.24738 1.33039 1.46222 1.62888 2.14048 2.29801 2.53289 2.85813 2.99691 3.07321 3.55099 3.81295 3.94606 3.96796 3.99909 4.02573 4.12807 4.14039 4.16042 4.18222 4.32453 4.38870 4.47155 4.49665 4.50317 4.53082 4.58604 4.60631 4.66564 4.69845 4.77448 4.81204 4.88806 4.97160 4.98189 5.00151 5.03374 5.07611 5.09676 5.15324 5.22957 5.24953 5.45234 5.47682 5.60728 5.64609 5.73266 6.04153 6.06046 6.24528 6.30732 6.72647 7.02348 7.30331 7.56025 8.81502 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.001694 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.789323 B =16523.423003 C =17211.837590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.025 3.975 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.258 1.258 7 C -0.510 4.510 8 H 0.045 0.955 9 C 0.005 3.995 10 H 0.021 0.979 11 C -0.100 4.100 12 C -0.127 4.127 13 C 0.109 3.891 14 N -0.629 5.629 15 C 0.695 3.305 16 O -0.644 6.644 17 N -0.733 5.733 18 C 0.143 3.857 19 C -0.114 4.114 20 C 0.065 3.935 21 O -0.402 6.402 22 C 0.059 3.941 23 C 0.075 3.925 24 H 0.074 0.926 25 C -0.144 4.144 26 C -0.150 4.150 27 C 0.037 3.963 28 O -0.405 6.405 29 C 0.141 3.859 30 H 0.266 0.734 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.411 0.589 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.044 0.956 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.468 1.946 7.084 38.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.174 4.174 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.549 4.549 8 H 0.064 0.936 9 C -0.015 4.015 10 H 0.039 0.961 11 C -0.138 4.138 12 C -0.165 4.165 13 C -0.012 4.012 14 N -0.365 5.365 15 C 0.397 3.603 16 O -0.526 6.526 17 N -0.393 5.393 18 C 0.018 3.982 19 C -0.152 4.152 20 C -0.012 4.012 21 O -0.322 6.322 22 C -0.017 4.017 23 C 0.018 3.982 24 H 0.092 0.908 25 C -0.182 4.182 26 C -0.187 4.187 27 C -0.039 4.039 28 O -0.325 6.325 29 C 0.018 3.982 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.105 0.895 48 H 0.118 0.882 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.089 0.911 52 H 0.062 0.938 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 36.866 2.359 7.447 37.684 hybrid contribution -0.485 0.936 0.025 1.055 sum 36.380 3.296 7.472 37.285 Atomic orbital electron populations 1.70020 1.07801 1.27857 1.52365 1.25732 0.95217 1.02151 0.94255 0.86042 0.79853 0.80326 0.78475 1.19189 1.21796 1.18252 1.21250 0.91304 0.93179 1.49159 0.93648 1.19450 0.93892 0.96290 0.91886 0.96076 1.21426 0.95147 0.96972 1.00266 1.21951 0.95405 1.03344 0.95837 1.21927 0.97808 0.88159 0.93335 1.47632 1.07589 1.26242 1.54989 1.16149 0.82457 0.81919 0.79818 1.90856 1.72113 1.39289 1.50366 1.45051 1.03193 1.28304 1.62718 1.21007 0.89543 0.89957 0.97656 1.21495 0.90788 0.99879 1.03017 1.22354 0.80667 0.97981 1.00183 1.87873 1.16208 1.48757 1.79321 1.22830 0.88695 0.92057 0.98145 1.23152 0.93529 0.85065 0.96444 0.90814 1.23261 0.94290 0.97816 1.02811 1.23123 0.97892 0.94044 1.03684 1.23332 0.82768 0.98645 0.99141 1.88495 1.32230 1.40648 1.71119 1.21816 0.77069 1.00242 0.99123 0.92526 0.92479 0.92690 0.92398 0.87574 0.87783 0.89926 0.74983 0.92606 0.92325 0.89893 0.89683 0.91947 0.92551 0.89981 0.92564 0.87726 0.89511 0.88182 0.89639 0.90917 0.91124 0.93757 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.02 1.48 5.47 84.65 0.46 1.94 16 3 Si 0.93 47.91 26.43 68.60 1.81 49.72 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.26 -13.53 5.78 99.48 0.58 -12.96 16 7 C -0.51 -29.02 8.87 25.60 0.23 -28.79 16 8 H 0.05 2.79 8.05 -2.91 -0.02 2.77 16 9 C 0.00 0.22 1.78 -11.46 -0.02 0.20 16 10 H 0.02 1.03 5.72 -2.38 -0.01 1.01 16 11 C -0.10 -3.62 5.14 30.62 0.16 -3.46 16 12 C -0.13 -3.25 6.08 30.67 0.19 -3.07 16 13 C 0.11 2.66 6.43 86.36 0.56 3.22 16 14 N -0.63 -22.63 2.97 -836.90 -2.49 -25.12 16 15 C 0.70 25.99 8.29 179.06 1.49 27.48 16 16 O -0.64 -30.73 15.79 -3.98 -0.06 -30.79 16 17 N -0.73 -18.85 5.47 -478.55 -2.62 -21.47 16 18 C 0.14 3.20 5.68 86.38 0.49 3.69 16 19 C -0.11 -1.84 5.70 30.59 0.17 -1.66 16 20 C 0.07 1.03 5.94 71.98 0.43 1.46 16 21 O -0.40 -7.65 10.33 -147.42 -1.52 -9.17 16 22 C 0.06 0.82 5.65 71.98 0.41 1.23 16 23 C 0.08 1.01 3.73 31.26 0.12 1.13 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 C -0.14 -0.98 6.57 32.05 0.21 -0.77 16 26 C -0.15 -0.91 7.02 31.86 0.22 -0.68 16 27 C 0.04 0.42 7.79 72.45 0.56 0.99 16 28 O -0.40 -7.56 11.03 -147.42 -1.63 -9.18 16 29 C 0.14 6.36 5.40 86.36 0.47 6.83 16 30 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.10 1.71 5.57 -2.38 -0.01 1.70 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 7.59 5.93 -92.71 -0.55 7.04 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.09 0.51 8.06 -2.39 -0.02 0.50 16 48 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.04 2.32 5.55 -2.39 -0.01 2.31 16 53 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -81.41 411.54 0.13 -81.28 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.20 Total: 14.28 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.14 Total: 9.72 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.81 Total: -105.86 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -3.21 Total: -49.15 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.81 Total: 49.72 kcal Total: -81.41 0.13 -81.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596102725.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.968 kcal (2) G-P(sol) polarization free energy of solvation -81.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds