Wall clock time and date at job start Sat Apr 11 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00225 * 2 1 4 4 H 1.48503 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46941 * 299.99842 * 3 2 1 6 6 H 1.48493 * 109.47172 * 59.99896 * 3 2 1 7 7 C 1.37879 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99549 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47252 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47341 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47103 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00062 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99756 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00100 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99965 * 180.02562 * 15 13 12 17 17 H 1.08993 * 109.47211 * 324.99709 * 16 15 13 18 18 C 1.52995 * 109.46750 * 85.00107 * 16 15 13 19 19 H 1.09000 * 110.27855 * 59.36127 * 18 16 15 20 20 C 1.55503 * 110.28399 * 297.19907 * 18 16 15 21 21 C 1.55305 * 100.69731 * 204.65557 * 20 18 16 22 22 C 1.54382 * 102.43395 * 34.13038 * 21 20 18 23 23 O 1.43232 * 107.59109 * 338.54226 * 22 21 20 24 24 C 1.52998 * 109.46857 * 204.99788 * 16 15 13 25 25 C 1.53002 * 112.85117 * 288.80396 * 24 16 15 26 26 O 1.42902 * 109.47177 * 180.02562 * 25 24 16 27 27 C 1.53786 * 113.61349 * 157.49988 * 24 16 15 28 28 C 1.53784 * 87.08010 * 220.01887 * 27 24 16 29 29 C 1.53780 * 87.08341 * 25.43077 * 28 27 24 30 30 H 0.97002 * 119.99682 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.47137 * 60.00026 * 9 7 2 32 32 H 1.09000 * 109.47214 * 299.99731 * 9 7 2 33 33 H 1.08997 * 109.46845 * 59.99702 * 10 9 7 34 34 H 1.09000 * 109.46984 * 300.00108 * 10 9 7 35 35 H 1.08997 * 109.47512 * 59.99967 * 11 10 9 36 36 H 1.09000 * 109.47052 * 299.99923 * 11 10 9 37 37 H 0.97001 * 120.00089 * 0.02562 * 12 11 10 38 38 H 0.97001 * 120.00051 * 0.02562 * 15 13 12 39 39 H 1.08999 * 111.32643 * 86.78498 * 20 18 16 40 40 H 1.08995 * 111.14910 * 322.45919 * 20 18 16 41 41 H 1.09002 * 110.85041 * 275.83884 * 21 20 18 42 42 H 1.09001 * 110.84389 * 152.42021 * 21 20 18 43 43 H 1.09009 * 109.82643 * 98.05629 * 22 21 20 44 44 H 1.08999 * 109.83123 * 218.93188 * 22 21 20 45 45 H 1.09001 * 109.46897 * 300.00264 * 25 24 16 46 46 H 1.08998 * 109.47385 * 60.00260 * 25 24 16 47 47 H 0.96698 * 114.00321 * 179.97438 * 26 25 24 48 48 H 1.08994 * 113.60911 * 334.56544 * 27 24 16 49 49 H 1.08996 * 113.61273 * 105.46764 * 27 24 16 50 50 H 1.09004 * 113.61058 * 270.88216 * 28 27 24 51 51 H 1.08998 * 113.61300 * 139.98384 * 28 27 24 52 52 H 1.08992 * 113.61440 * 220.02081 * 29 28 27 53 53 H 1.09003 * 113.69126 * 89.12713 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4321 -6.1006 -0.0007 13 6 1.9828 -7.3713 -0.0008 14 8 0.7874 -7.5934 -0.0009 15 7 2.8586 -8.3957 -0.0009 16 6 2.3702 -9.7770 -0.0016 17 1 1.4553 -9.8391 0.5875 18 6 2.0823 -10.2153 -1.4388 19 1 2.9870 -10.1473 -2.0429 20 6 0.9537 -9.3397 -2.0536 21 6 0.4024 -10.3019 -3.1409 22 6 0.5723 -11.6855 -2.4775 23 8 1.5697 -11.5571 -1.4577 24 6 3.4326 -10.6938 0.6081 25 6 4.6496 -10.8792 -0.3005 26 8 5.5919 -11.7447 0.3361 27 6 2.8655 -12.0131 1.1582 28 6 3.8379 -11.8479 2.3380 29 6 3.7958 -10.3362 2.0590 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5570 -0.8898 32 1 0.6240 -2.5567 0.8903 33 1 2.8718 -3.6043 0.8905 34 1 2.8718 -3.6043 -0.8894 35 1 0.8538 -5.0446 -0.8903 36 1 0.8532 -5.0450 0.8897 37 1 3.3858 -5.9234 -0.0003 38 1 3.8123 -8.2185 -0.0005 39 1 1.3562 -8.4309 -2.5008 40 1 0.1898 -9.1055 -1.3123 41 1 0.9933 -10.2344 -4.0544 42 1 -0.6484 -10.0957 -3.3446 43 1 -0.3720 -12.0011 -2.0336 44 1 0.8933 -12.4151 -3.2209 45 1 4.3334 -11.3196 -1.2460 46 1 5.1140 -9.9111 -0.4879 47 1 6.3904 -11.9076 -0.1843 48 1 1.8159 -11.9510 1.4455 49 1 3.0832 -12.8773 0.5306 50 1 4.8158 -12.2970 2.1640 51 1 3.4083 -12.1265 3.3002 52 1 4.7645 -9.8467 2.1586 53 1 3.0011 -9.8144 2.5921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:56 Heat of formation + Delta-G solvation = -142.424706 kcal Electronic energy + Delta-G solvation = -31100.951655 eV Core-core repulsion = 26971.813398 eV Total energy + Delta-G solvation = -4129.138257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93610 -40.42124 -39.78422 -37.10237 -36.62080 -35.58612 -35.17177 -33.16685 -32.89078 -31.31756 -28.99996 -28.44992 -26.50787 -26.42773 -24.83272 -23.79947 -22.52784 -22.28943 -22.14683 -21.33204 -19.76316 -19.13870 -18.56485 -18.20098 -18.00893 -17.38081 -16.87336 -16.56995 -16.48869 -16.10707 -15.85619 -15.66876 -15.54381 -15.36259 -15.17082 -14.91877 -14.26225 -14.12004 -14.04857 -13.71489 -13.51825 -13.37344 -13.17762 -12.98357 -12.78698 -12.65559 -12.53796 -12.53313 -12.36345 -12.31107 -12.19880 -11.90706 -11.65661 -11.55066 -11.33098 -11.23404 -11.16986 -11.05856 -10.96255 -10.71461 -10.56333 -10.55618 -10.16071 -9.73493 -8.19175 -6.30385 1.41932 1.42101 1.55029 1.61039 2.15315 2.42077 2.82213 3.14857 3.26230 3.32743 3.43412 3.60834 3.68932 3.84335 3.99801 4.01327 4.08604 4.14239 4.19385 4.26015 4.28277 4.34965 4.45903 4.58462 4.58682 4.60665 4.75853 4.81642 4.82327 4.91816 4.93140 4.97172 4.98089 4.98595 5.02301 5.06030 5.17115 5.18804 5.24957 5.29579 5.42483 5.50018 5.51323 5.58965 5.70209 5.72750 5.85492 6.00887 6.06422 6.23632 6.87440 6.99793 7.12517 7.39288 7.62407 8.93181 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.002200 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.803026 B =12726.513897 C =13843.965632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.100 4.100 11 C 0.153 3.847 12 N -0.730 5.730 13 C 0.700 3.300 14 O -0.624 6.624 15 N -0.720 5.720 16 C 0.193 3.807 17 H 0.069 0.931 18 C 0.076 3.924 19 H 0.084 0.916 20 C -0.147 4.147 21 C -0.155 4.155 22 C 0.050 3.950 23 O -0.381 6.381 24 C -0.081 4.081 25 C 0.103 3.897 26 O -0.575 6.575 27 C -0.103 4.103 28 C -0.134 4.134 29 C -0.120 4.120 30 H 0.263 0.737 31 H -0.008 1.008 32 H -0.009 1.009 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.411 0.589 38 H 0.411 0.589 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.393 0.607 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.100 0.900 51 H 0.057 0.943 52 H 0.073 0.927 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.389 -28.194 -3.644 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.028 3.972 12 N -0.386 5.386 13 C 0.400 3.600 14 O -0.504 6.504 15 N -0.378 5.378 16 C 0.087 3.913 17 H 0.087 0.913 18 C 0.017 3.983 19 H 0.101 0.899 20 C -0.185 4.185 21 C -0.192 4.192 22 C -0.027 4.027 23 O -0.300 6.300 24 C -0.082 4.082 25 C 0.025 3.975 26 O -0.383 6.383 27 C -0.141 4.141 28 C -0.171 4.171 29 C -0.158 4.158 30 H 0.072 0.928 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.243 0.757 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.118 0.882 51 H 0.076 0.924 52 H 0.092 0.908 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.771 -28.452 -3.053 30.575 hybrid contribution 0.642 1.581 -0.592 1.806 sum 11.413 -26.870 -3.644 29.420 Atomic orbital electron populations 1.70118 1.07949 1.27697 1.51840 1.26022 0.95732 1.03550 0.94858 0.85377 0.79238 0.78699 0.77589 1.18149 1.20608 1.20654 1.21713 0.93744 0.92001 1.50198 0.91526 1.18941 0.94456 0.92979 0.95031 1.21579 0.98399 0.91779 1.02053 1.21029 0.91264 0.84545 1.00376 1.45026 1.10767 1.03552 1.79239 1.16078 0.85168 0.81157 0.77572 1.90877 1.15986 1.84394 1.59189 1.44787 1.09265 1.03816 1.79901 1.20614 0.96899 0.79025 0.94793 0.91297 1.23467 0.96742 0.81986 0.96102 0.89877 1.23406 0.98729 0.97957 0.98392 1.23146 1.02893 0.94335 0.98837 1.23218 0.91945 0.97221 0.90288 1.88378 1.56422 1.28292 1.56904 1.22019 0.94518 0.96575 0.95085 1.21784 0.88200 0.93751 0.93717 1.86472 1.33585 1.69321 1.48923 1.22621 0.98154 0.96044 0.97325 1.22888 1.00761 0.95957 0.97462 1.22781 1.01292 0.97282 0.94443 0.92843 0.98958 0.99049 0.91490 0.91350 0.93465 0.93707 0.75328 0.75271 0.91770 0.90944 0.89614 0.89997 0.91399 0.89712 0.92642 0.92146 0.75691 0.91540 0.91424 0.88189 0.92377 0.90799 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 11 C 0.15 5.28 5.67 86.38 0.49 5.77 16 12 N -0.73 -19.15 5.56 -478.53 -2.66 -21.81 16 13 C 0.70 19.36 7.70 179.05 1.38 20.74 16 14 O -0.62 -22.66 13.10 -3.99 -0.05 -22.71 16 15 N -0.72 -13.82 4.78 -457.83 -2.19 -16.01 16 16 C 0.19 3.88 1.60 44.99 0.07 3.95 16 17 H 0.07 1.86 7.38 -2.39 -0.02 1.84 16 18 C 0.08 1.47 2.51 31.45 0.08 1.55 16 19 H 0.08 1.35 6.69 -2.39 -0.02 1.33 16 20 C -0.15 -3.41 4.88 32.25 0.16 -3.26 16 21 C -0.15 -2.71 7.00 31.86 0.22 -2.48 16 22 C 0.05 0.83 7.80 72.45 0.56 1.39 16 23 O -0.38 -7.66 9.87 -148.98 -1.47 -9.13 16 24 C -0.08 -1.32 0.54 -51.65 -0.03 -1.35 16 25 C 0.10 1.22 5.83 71.98 0.42 1.64 16 26 O -0.57 -6.38 10.54 -148.98 -1.57 -7.95 16 27 C -0.10 -1.89 6.06 31.12 0.19 -1.70 16 28 C -0.13 -2.27 7.53 31.12 0.23 -2.04 16 29 C -0.12 -2.06 6.82 31.12 0.21 -1.85 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 7.94 8.49 -92.71 -0.79 7.15 16 38 H 0.41 5.35 7.84 -92.71 -0.73 4.63 16 39 H 0.06 1.60 7.96 -2.39 -0.02 1.58 16 40 H 0.07 2.19 6.13 -2.39 -0.01 2.18 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 0.67 6.68 -2.39 -0.02 0.65 16 46 H 0.06 0.52 7.42 -2.39 -0.02 0.50 16 47 H 0.39 1.10 9.12 -74.06 -0.68 0.42 16 48 H 0.07 1.36 7.96 -2.39 -0.02 1.34 16 49 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 50 H 0.10 1.70 6.15 -2.39 -0.01 1.69 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 53 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -72.12 408.46 -1.90 -74.02 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -1.27 Total: 24.01 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.00 Total: -9.24 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.56 Total: -94.59 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -3.09 Total: -39.79 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.12 -1.90 -74.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.406 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds