Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47408 * 239.99886 * 3 2 1 5 5 H 1.48497 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47067 * 119.99867 * 3 2 1 7 7 C 1.37883 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47416 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47172 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99733 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00210 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99847 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99817 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.47159 * 34.99579 * 16 15 13 18 18 C 1.52994 * 109.47143 * 154.99696 * 16 15 13 19 19 H 1.09002 * 109.87128 * 184.29295 * 18 16 15 20 20 C 1.54096 * 109.87949 * 305.30169 * 18 16 15 21 21 C 1.54816 * 104.18948 * 121.45420 * 20 18 16 22 22 C 1.55001 * 102.09056 * 20.87851 * 21 20 18 23 23 O 1.43748 * 109.88196 * 63.28734 * 18 16 15 24 24 C 1.52998 * 109.46651 * 274.99695 * 16 15 13 25 25 C 1.52996 * 112.84880 * 191.19874 * 24 16 15 26 26 O 1.42898 * 109.47459 * 178.47083 * 25 24 16 27 27 C 1.53782 * 113.61779 * 59.99999 * 24 16 15 28 28 C 1.53781 * 87.08260 * 219.93457 * 27 24 16 29 29 C 1.53786 * 87.17350 * 25.39213 * 28 27 24 30 30 H 0.96994 * 119.99769 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47222 * 60.00368 * 9 7 2 32 32 H 1.09005 * 109.47545 * 300.00420 * 9 7 2 33 33 H 1.08992 * 109.47637 * 59.99942 * 10 9 7 34 34 H 1.09004 * 109.46706 * 299.99550 * 10 9 7 35 35 H 1.09009 * 109.46927 * 59.99441 * 11 10 9 36 36 H 1.08997 * 109.47150 * 300.00113 * 11 10 9 37 37 H 0.96995 * 120.00283 * 0.02562 * 12 11 10 38 38 H 0.96997 * 119.99907 * 359.97438 * 15 13 12 39 39 H 1.09002 * 110.49203 * 240.12721 * 20 18 16 40 40 H 1.09004 * 110.49038 * 2.64668 * 20 18 16 41 41 H 1.08995 * 110.91170 * 139.07929 * 21 20 18 42 42 H 1.09002 * 110.90575 * 262.64758 * 21 20 18 43 43 H 1.08999 * 110.61269 * 81.47797 * 22 21 20 44 44 H 1.08998 * 110.61858 * 204.31285 * 22 21 20 45 45 H 1.09007 * 109.47283 * 298.47041 * 25 24 16 46 46 H 1.09004 * 109.47455 * 58.46559 * 25 24 16 47 47 H 0.96701 * 114.00250 * 180.02562 * 26 25 24 48 48 H 1.09001 * 113.61250 * 105.38275 * 27 24 16 49 49 H 1.08996 * 113.68722 * 334.49589 * 27 24 16 50 50 H 1.09002 * 113.61445 * 139.98212 * 28 27 24 51 51 H 1.09002 * 113.61408 * 270.79943 * 28 27 24 52 52 H 1.08993 * 113.61491 * 89.15923 * 29 28 27 53 53 H 1.09000 * 113.61138 * 220.06261 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9872 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7877 -7.5935 -0.0020 15 7 2.8589 -8.3957 -0.0020 16 6 2.3705 -9.7770 -0.0026 17 1 1.4560 -9.8387 -0.5924 18 6 3.4333 -10.6934 -0.6122 19 1 3.0476 -11.7102 -0.6859 20 6 3.8281 -10.1801 -2.0105 21 6 5.3520 -9.9277 -1.9058 22 6 5.7447 -10.8102 -0.6936 23 8 4.6177 -10.6777 0.2021 24 6 2.0816 -10.2163 1.4341 25 6 1.8299 -11.7205 1.5562 26 8 1.6040 -12.0561 2.9267 27 6 1.0212 -9.3550 2.1403 28 6 1.8953 -9.4530 3.4018 29 6 3.0923 -9.6767 2.4625 30 1 -0.4849 0.8400 -0.0004 31 1 0.6242 -2.5568 -0.8903 32 1 0.6247 -2.5572 0.8897 33 1 2.8720 -3.6044 0.8893 34 1 2.8719 -3.6043 -0.8906 35 1 0.8539 -5.0446 -0.8914 36 1 0.8534 -5.0452 0.8885 37 1 3.3860 -5.9234 -0.0014 38 1 3.8126 -8.2185 -0.0023 39 1 3.6177 -10.9355 -2.7677 40 1 3.3009 -9.2540 -2.2400 41 1 5.8640 -10.2580 -2.8095 42 1 5.5592 -8.8764 -1.7057 43 1 5.8692 -11.8489 -0.9995 44 1 6.6560 -10.4370 -0.2264 45 1 0.9539 -11.9914 0.9667 46 1 2.6988 -12.2655 1.1871 47 1 1.4374 -12.9964 3.0791 48 1 0.0541 -9.8478 2.2399 49 1 0.9420 -8.3438 1.7415 50 1 1.9518 -8.5228 3.9671 51 1 1.6641 -10.3151 4.0274 52 1 3.5814 -8.7538 2.1512 53 1 3.7947 -10.4288 2.8219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266570.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -133.262614 kcal Electronic energy + Delta-G solvation = -31523.692614 eV Core-core repulsion = 27394.951655 eV Total energy + Delta-G solvation = -4128.740959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13857 -40.26788 -39.68330 -37.11906 -36.56357 -35.36173 -35.14022 -33.14144 -32.82397 -31.60827 -28.86856 -28.50155 -26.48216 -26.16657 -24.75563 -23.90155 -22.54471 -22.28184 -21.93302 -21.50328 -19.44968 -19.22985 -18.60948 -18.46759 -17.60830 -17.14364 -16.89890 -16.59703 -16.38517 -16.19311 -15.99721 -15.89347 -15.62073 -15.16669 -15.09603 -14.49586 -14.38794 -14.24997 -13.77173 -13.69297 -13.62022 -13.56313 -13.13998 -12.89525 -12.70274 -12.59062 -12.54551 -12.53130 -12.39002 -12.22696 -11.94860 -11.65757 -11.62925 -11.61397 -11.38983 -11.23537 -11.13181 -11.07450 -10.87881 -10.73028 -10.54323 -10.47632 -10.13649 -9.70941 -8.18894 -6.30520 1.41538 1.44819 1.52588 1.70884 2.18190 2.42341 2.92763 3.14690 3.23886 3.40615 3.47433 3.73060 3.76287 3.90614 4.02621 4.07032 4.13564 4.17761 4.23319 4.24859 4.37818 4.39711 4.52050 4.56704 4.57596 4.69407 4.82767 4.85700 4.87582 4.95060 4.97074 4.97731 5.01101 5.04491 5.09180 5.15586 5.17504 5.17744 5.24011 5.26824 5.46265 5.48848 5.56527 5.65319 5.71949 5.75596 5.84870 5.97727 6.06157 6.23339 6.86688 7.00565 7.13743 7.38957 7.63505 8.93135 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002357 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.324372 B =11876.961864 C =12947.012365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.100 4.100 11 C 0.153 3.847 12 N -0.732 5.732 13 C 0.700 3.300 14 O -0.623 6.623 15 N -0.715 5.715 16 C 0.186 3.814 17 H 0.084 0.916 18 C 0.076 3.924 19 H 0.097 0.903 20 C -0.153 4.153 21 C -0.151 4.151 22 C 0.041 3.959 23 O -0.374 6.374 24 C -0.083 4.083 25 C 0.105 3.895 26 O -0.580 6.580 27 C -0.142 4.142 28 C -0.143 4.143 29 C -0.089 4.089 30 H 0.263 0.737 31 H -0.008 1.008 32 H -0.010 1.010 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.391 0.609 48 H 0.042 0.958 49 H 0.080 0.920 50 H 0.038 0.962 51 H 0.093 0.907 52 H 0.069 0.931 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.816 -30.543 -1.988 33.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.138 4.138 11 C 0.028 3.972 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.505 6.505 15 N -0.370 5.370 16 C 0.080 3.920 17 H 0.102 0.898 18 C 0.018 3.982 19 H 0.115 0.885 20 C -0.191 4.191 21 C -0.188 4.188 22 C -0.035 4.035 23 O -0.294 6.294 24 C -0.085 4.085 25 C 0.027 3.973 26 O -0.388 6.388 27 C -0.180 4.180 28 C -0.180 4.180 29 C -0.126 4.126 30 H 0.072 0.928 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.245 0.755 38 H 0.245 0.755 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.241 0.759 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.057 0.943 51 H 0.112 0.888 52 H 0.087 0.913 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.687 -29.973 -1.698 32.592 hybrid contribution 0.279 0.810 -0.175 0.875 sum 12.965 -29.163 -1.873 31.970 Atomic orbital electron populations 1.70110 1.07967 1.27860 1.51640 1.26034 0.95744 1.03573 0.94777 0.85468 0.78193 0.77908 0.79280 1.18913 1.21170 1.19084 1.21655 0.93735 0.92020 1.50545 0.91539 1.18923 0.94417 0.92945 0.94998 1.21576 0.98406 0.91808 1.01974 1.21024 0.91267 0.84607 1.00306 1.45045 1.10660 1.03718 1.79340 1.16089 0.85215 0.81189 0.77488 1.90871 1.16019 1.84494 1.59100 1.44809 1.09027 1.04071 1.79121 1.20721 0.96826 0.79633 0.94860 0.89788 1.23045 0.86599 0.98558 0.90016 0.88540 1.23001 0.97078 1.02621 0.96429 1.23123 0.94752 1.01161 0.99801 1.23745 0.90116 0.99763 0.89873 1.89019 1.14565 1.94731 1.31054 1.22193 0.97431 0.94615 0.94250 1.21805 0.99788 0.92595 0.83117 1.86511 1.94614 1.31734 1.25921 1.23197 0.96558 1.01000 0.97215 1.22922 0.97810 1.00611 0.96638 1.22497 0.95042 1.00117 0.94966 0.92810 0.98914 0.99154 0.91646 0.91320 0.93400 0.93886 0.75518 0.75506 0.89148 0.91305 0.88853 0.90746 0.91083 0.88159 0.93084 0.91240 0.75918 0.93873 0.90227 0.94284 0.88833 0.91254 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -3.90 5.27 30.59 0.16 -3.73 16 11 C 0.15 5.54 5.67 86.38 0.49 6.03 16 12 N -0.73 -20.66 5.56 -478.53 -2.66 -23.32 16 13 C 0.70 20.54 7.36 179.05 1.32 21.86 16 14 O -0.62 -23.66 13.51 -3.98 -0.05 -23.71 16 15 N -0.71 -14.79 2.64 -457.82 -1.21 -16.00 16 16 C 0.19 3.54 1.78 44.99 0.08 3.62 16 17 H 0.08 1.92 7.58 -2.39 -0.02 1.90 16 18 C 0.08 0.95 2.44 30.96 0.08 1.02 16 19 H 0.10 0.92 6.86 -2.39 -0.02 0.91 16 20 C -0.15 -1.61 6.29 31.59 0.20 -1.41 16 21 C -0.15 -1.19 7.16 31.90 0.23 -0.97 16 22 C 0.04 0.34 7.72 72.67 0.56 0.90 16 23 O -0.37 -4.94 9.41 -148.98 -1.40 -6.34 16 24 C -0.08 -1.76 0.83 -51.59 -0.04 -1.80 16 25 C 0.10 1.67 5.96 71.98 0.43 2.10 16 26 O -0.58 -9.70 10.53 -148.98 -1.57 -11.27 16 27 C -0.14 -4.10 6.66 31.12 0.21 -3.89 16 28 C -0.14 -3.77 7.52 31.12 0.23 -3.54 16 29 C -0.09 -2.00 5.74 31.18 0.18 -1.82 16 30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 8.87 8.49 -92.71 -0.79 8.08 16 38 H 0.41 6.75 8.12 -92.71 -0.75 5.99 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.99 7.15 -2.38 -0.02 0.97 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 0.87 6.62 -2.39 -0.02 0.85 16 47 H 0.39 2.85 9.12 -74.06 -0.68 2.17 16 48 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 49 H 0.08 2.78 4.13 -2.39 -0.01 2.77 16 50 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.09 2.44 6.15 -2.39 -0.01 2.43 16 52 H 0.07 1.61 6.79 -2.39 -0.02 1.60 16 53 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -74.58 404.85 -0.91 -75.49 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -1.29 Total: 26.68 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.96 Total: -10.16 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.59 Total: -96.80 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -3.02 Total: -41.32 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.58 -0.91 -75.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266570.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.775 kcal (2) G-P(sol) polarization free energy of solvation -74.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds