Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47246 * 270.00039 * 3 2 1 5 5 H 1.48497 * 109.47178 * 30.00697 * 3 2 1 6 6 H 1.48499 * 109.46847 * 150.00200 * 3 2 1 7 7 C 1.37874 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47349 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46939 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46637 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99738 * 180.02562 * 12 11 10 14 14 O 1.21594 * 119.99721 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99939 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99808 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.47615 * 325.00245 * 16 15 13 18 18 C 1.52998 * 109.46937 * 205.00041 * 16 15 13 19 19 H 1.09002 * 109.83133 * 295.44446 * 18 16 15 20 20 C 1.54388 * 109.83130 * 56.42488 * 18 16 15 21 21 C 1.55304 * 102.25492 * 140.86989 * 20 18 16 22 22 C 1.54946 * 100.94296 * 325.86457 * 21 20 18 23 23 O 1.43238 * 109.83117 * 174.55249 * 18 16 15 24 24 C 1.53005 * 109.47075 * 85.00707 * 16 15 13 25 25 C 1.52993 * 112.84974 * 53.82698 * 24 16 15 26 26 O 1.42904 * 109.46897 * 185.07416 * 25 24 16 27 27 C 1.53778 * 113.60758 * 282.52422 * 24 16 15 28 28 C 1.53789 * 87.07950 * 220.01765 * 27 24 16 29 29 C 1.53779 * 113.61244 * 185.02911 * 24 16 15 30 30 H 0.96998 * 119.99693 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47414 * 59.99752 * 9 7 2 32 32 H 1.09004 * 109.46864 * 299.99926 * 9 7 2 33 33 H 1.09004 * 109.47074 * 60.00283 * 10 9 7 34 34 H 1.08991 * 109.46977 * 300.00030 * 10 9 7 35 35 H 1.08995 * 109.46864 * 60.00149 * 11 10 9 36 36 H 1.08995 * 109.46861 * 299.99757 * 11 10 9 37 37 H 0.96995 * 120.00131 * 0.02562 * 12 11 10 38 38 H 0.97003 * 120.00251 * 0.02562 * 15 13 12 39 39 H 1.09002 * 110.84223 * 259.05819 * 20 18 16 40 40 H 1.09001 * 110.84809 * 22.47149 * 20 18 16 41 41 H 1.08997 * 111.12650 * 83.78427 * 21 20 18 42 42 H 1.09002 * 111.12265 * 207.90842 * 21 20 18 43 43 H 1.09002 * 110.30898 * 277.53342 * 22 21 20 44 44 H 1.08997 * 110.31433 * 155.35865 * 22 21 20 45 45 H 1.08997 * 109.47190 * 305.07465 * 25 24 16 46 46 H 1.08994 * 109.47436 * 65.07804 * 25 24 16 47 47 H 0.96703 * 114.00090 * 179.97438 * 26 25 24 48 48 H 1.09002 * 113.62093 * 334.56232 * 27 24 16 49 49 H 1.09000 * 113.61717 * 105.47122 * 27 24 16 50 50 H 1.09000 * 113.61182 * 270.88396 * 28 27 24 51 51 H 1.08999 * 113.68669 * 139.99296 * 28 27 24 52 52 H 1.08998 * 113.60869 * 254.52478 * 29 24 16 53 53 H 1.09000 * 113.61872 * 25.34094 * 29 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9872 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3714 -0.0019 14 8 0.7872 -7.5935 -0.0010 15 7 2.8584 -8.3958 -0.0030 16 6 2.3700 -9.7770 -0.0025 17 1 1.4559 -9.8390 0.5878 18 6 3.4332 -10.6937 0.6058 19 1 4.3222 -10.6984 -0.0250 20 6 3.7977 -10.2040 2.0239 21 6 3.9562 -11.5383 2.8027 22 6 2.8817 -12.4131 2.1092 23 8 2.9162 -12.0240 0.7269 24 6 2.0799 -10.2158 -1.4393 25 6 3.2746 -10.0165 -2.3741 26 8 2.8904 -10.3360 -3.7129 27 6 0.7590 -9.6610 -1.9979 28 6 0.5471 -11.0381 -2.6489 29 6 1.4449 -11.6127 -1.5404 30 1 -0.4849 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8902 32 1 0.6246 -2.5571 0.8897 33 1 2.8725 -3.6048 0.8878 34 1 2.8710 -3.6040 -0.8922 35 1 0.8524 -5.0447 -0.8905 36 1 0.8544 -5.0450 0.8895 37 1 3.3856 -5.9235 -0.0021 38 1 3.8121 -8.2186 -0.0033 39 1 4.7348 -9.6474 2.0131 40 1 2.9940 -9.5992 2.4439 41 1 4.9529 -11.9575 2.6650 42 1 3.7317 -11.4045 3.8609 43 1 1.8983 -12.2123 2.5343 44 1 3.1303 -13.4695 2.2112 45 1 3.6025 -8.9780 -2.3282 46 1 4.0908 -10.6692 -2.0648 47 1 3.6001 -10.2317 -4.3613 48 1 0.0244 -9.4243 -1.2281 49 1 0.8941 -8.8539 -2.7179 50 1 0.9783 -11.1204 -3.6466 51 1 -0.4833 -11.3905 -2.6027 52 1 2.1339 -12.3811 -1.8910 53 1 0.8992 -11.9102 -0.6449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266572.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -143.024410 kcal Electronic energy + Delta-G solvation = -31178.155898 eV Core-core repulsion = 27048.991635 eV Total energy + Delta-G solvation = -4129.164262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.93657 -40.38051 -39.74867 -37.08524 -36.60169 -35.73903 -35.15165 -33.11979 -32.87592 -31.22201 -29.02057 -28.43619 -26.45682 -26.42362 -24.89366 -23.80968 -22.49356 -22.28281 -21.99376 -21.45609 -19.59675 -19.17453 -18.56765 -18.47596 -17.92306 -17.05437 -16.86160 -16.79427 -16.49279 -16.16019 -15.99352 -15.61806 -15.48242 -15.25067 -15.05184 -14.87565 -14.27623 -14.19841 -13.85197 -13.72050 -13.55513 -13.42157 -13.14819 -12.95298 -12.76698 -12.67387 -12.55491 -12.53332 -12.36365 -12.26466 -12.11274 -11.74807 -11.65528 -11.61454 -11.48576 -11.28021 -11.19889 -11.12609 -10.90906 -10.75454 -10.55148 -10.43158 -10.17372 -9.69940 -8.19079 -6.30685 1.41743 1.43319 1.54061 1.62249 2.21263 2.42113 2.89820 3.14742 3.29140 3.35398 3.41683 3.59715 3.79282 3.88606 3.97696 4.04565 4.10750 4.18371 4.20725 4.24934 4.28988 4.40746 4.44172 4.57395 4.57704 4.67541 4.79187 4.84934 4.88771 4.94918 4.97234 4.97585 4.99412 4.99852 5.02870 5.08256 5.16840 5.18131 5.23101 5.27832 5.42141 5.48982 5.56710 5.58248 5.71833 5.71911 5.84942 6.03137 6.08491 6.23046 6.86962 6.97745 7.15974 7.38985 7.65878 8.93179 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.002227 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.720829 B =12567.570392 C =13554.244255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.153 3.847 12 N -0.730 5.730 13 C 0.701 3.299 14 O -0.627 6.627 15 N -0.720 5.720 16 C 0.180 3.820 17 H 0.064 0.936 18 C 0.082 3.918 19 H 0.104 0.896 20 C -0.150 4.150 21 C -0.149 4.149 22 C 0.039 3.961 23 O -0.377 6.377 24 C -0.087 4.087 25 C 0.106 3.894 26 O -0.580 6.580 27 C -0.115 4.115 28 C -0.141 4.141 29 C -0.089 4.089 30 H 0.263 0.737 31 H -0.010 1.010 32 H -0.009 1.009 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.411 0.589 38 H 0.411 0.589 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.391 0.609 48 H 0.059 0.941 49 H 0.034 0.966 50 H 0.094 0.906 51 H 0.052 0.948 52 H 0.071 0.929 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.179 -28.828 1.124 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.028 3.972 12 N -0.386 5.386 13 C 0.401 3.599 14 O -0.508 6.508 15 N -0.378 5.378 16 C 0.073 3.927 17 H 0.082 0.918 18 C 0.024 3.976 19 H 0.121 0.879 20 C -0.188 4.188 21 C -0.186 4.186 22 C -0.037 4.037 23 O -0.296 6.296 24 C -0.089 4.089 25 C 0.028 3.972 26 O -0.388 6.388 27 C -0.153 4.153 28 C -0.179 4.179 29 C -0.127 4.127 30 H 0.072 0.928 31 H 0.008 0.992 32 H 0.010 0.990 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.247 0.753 38 H 0.248 0.752 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.118 0.882 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.241 0.759 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.112 0.888 51 H 0.071 0.929 52 H 0.090 0.910 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.319 -29.173 1.266 32.095 hybrid contribution 0.753 1.721 -0.103 1.881 sum 14.071 -27.452 1.163 30.870 Atomic orbital electron populations 1.70122 1.08003 1.27777 1.51759 1.26044 0.95741 1.03626 0.94827 0.85406 0.78708 0.78236 0.78441 1.19855 1.21114 1.18283 1.21681 0.93765 0.91946 1.50336 0.91423 1.18941 0.94472 0.93064 0.94956 1.21572 0.98362 0.91641 1.02097 1.21011 0.91324 0.84720 1.00158 1.44986 1.10695 1.03508 1.79427 1.16068 0.85144 0.81178 0.77543 1.90904 1.16240 1.84487 1.59147 1.44705 1.09163 1.03924 1.79978 1.20976 0.97774 0.79433 0.94475 0.91782 1.22905 0.94743 0.82447 0.97531 0.87868 1.23183 1.03444 0.98559 0.93588 1.23251 1.00314 0.94317 1.00740 1.23580 0.98565 1.00418 0.81112 1.88491 1.85878 1.29097 1.26118 1.22204 0.94649 0.97885 0.94137 1.21749 0.94530 0.98964 0.81961 1.86510 1.42834 1.91487 1.18001 1.22668 0.97354 0.96423 0.98819 1.22973 0.99142 0.95891 0.99849 1.22513 0.97911 0.94618 0.97698 0.92844 0.99189 0.99027 0.91241 0.91416 0.94004 0.93688 0.75271 0.75215 0.87798 0.91849 0.88931 0.89170 0.92997 0.88160 0.93441 0.91330 0.75945 0.92250 0.94707 0.88771 0.92941 0.91043 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 11 C 0.15 5.46 5.67 86.38 0.49 5.95 16 12 N -0.73 -19.62 5.56 -478.52 -2.66 -22.28 16 13 C 0.70 20.06 8.32 179.06 1.49 21.55 16 14 O -0.63 -24.25 13.78 -4.01 -0.06 -24.30 16 15 N -0.72 -13.41 3.76 -457.82 -1.72 -15.13 16 16 C 0.18 3.51 1.32 44.99 0.06 3.57 16 17 H 0.06 1.72 7.49 -2.39 -0.02 1.70 16 18 C 0.08 1.08 3.01 31.06 0.09 1.17 16 19 H 0.10 0.97 6.83 -2.39 -0.02 0.95 16 20 C -0.15 -1.58 6.05 31.86 0.19 -1.39 16 21 C -0.15 -1.25 7.16 32.05 0.23 -1.02 16 22 C 0.04 0.46 7.78 72.65 0.57 1.02 16 23 O -0.38 -5.93 8.77 -148.98 -1.31 -7.24 16 24 C -0.09 -1.84 0.68 -51.66 -0.04 -1.88 16 25 C 0.11 1.71 6.08 71.98 0.44 2.15 16 26 O -0.58 -10.07 10.54 -148.98 -1.57 -11.64 16 27 C -0.11 -3.31 5.76 31.12 0.18 -3.13 16 28 C -0.14 -3.48 7.54 31.12 0.23 -3.24 16 29 C -0.09 -1.92 5.48 31.12 0.17 -1.75 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 16 33 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.41 7.93 8.49 -92.71 -0.79 7.14 16 38 H 0.41 4.54 8.58 -92.71 -0.80 3.75 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.94 7.85 -2.39 -0.02 0.92 16 41 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.75 7.54 -2.39 -0.02 0.73 16 46 H 0.07 0.79 7.07 -2.39 -0.02 0.78 16 47 H 0.39 3.26 9.12 -74.06 -0.68 2.59 16 48 H 0.06 2.05 6.84 -2.39 -0.02 2.03 16 49 H 0.03 1.13 8.10 -2.39 -0.02 1.12 16 50 H 0.09 2.32 6.18 -2.39 -0.01 2.31 16 51 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 53 H 0.07 1.66 7.57 -2.39 -0.02 1.64 16 Total: -1.00 -76.67 409.71 -1.23 -77.90 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -1.34 Total: 23.09 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.11 Total: -8.86 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -4.10 Total: -94.71 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.93 Total: -43.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.67 -1.23 -77.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266572.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.124 kcal (2) G-P(sol) polarization free energy of solvation -76.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds