Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35040 * 125.92894 * 2 1 4 4 C 1.35084 * 107.97783 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.07467 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46855 * 105.57978 * 5 4 3 7 7 C 1.46895 * 111.00123 * 174.80966 * 6 5 4 8 8 C 1.53039 * 109.46377 * 204.99872 * 7 6 5 9 9 C 1.53193 * 109.31315 * 178.61343 * 8 7 6 10 10 N 1.46927 * 108.89207 * 54.56712 * 9 8 7 11 11 C 1.36933 * 120.62935 * 126.46152 * 10 9 8 12 12 H 1.08002 * 120.00311 * 332.47134 * 11 10 9 13 13 C 1.38819 * 119.99873 * 152.47470 * 11 10 9 14 14 N 1.31618 * 119.99773 * 158.31203 * 13 11 10 15 15 Si 1.86796 * 119.99817 * 338.30669 * 13 11 10 16 16 H 1.48500 * 109.47007 * 91.10941 * 15 13 11 17 17 H 1.48498 * 109.47031 * 211.10769 * 15 13 11 18 18 H 1.48491 * 109.47404 * 331.10994 * 15 13 11 19 19 C 1.46963 * 118.71529 * 306.63759 * 10 9 8 20 20 C 1.53043 * 109.46219 * 84.93026 * 7 6 5 21 21 C 1.40844 * 107.85027 * 0.22674 * 4 3 2 22 22 C 1.48419 * 126.04094 * 179.77251 * 21 4 3 23 23 C 1.39324 * 120.11694 * 316.53650 * 22 21 4 24 24 C 1.38023 * 119.87792 * 179.71593 * 23 22 21 25 25 C 1.38321 * 120.11770 * 0.55693 * 24 23 22 26 26 C 1.38326 * 120.24332 * 359.72190 * 25 24 23 27 27 C 1.38021 * 120.11465 * 359.97438 * 26 25 24 28 28 N 1.31624 * 107.92225 * 359.61692 * 21 4 3 29 29 H 1.08998 * 109.47496 * 90.00465 * 1 2 3 30 30 H 1.09007 * 109.47354 * 210.00622 * 1 2 3 31 31 H 1.08998 * 109.47408 * 330.00023 * 1 2 3 32 32 H 1.07999 * 126.00799 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46831 * 345.57916 * 5 4 3 34 34 H 1.09001 * 109.47029 * 225.58158 * 5 4 3 35 35 H 1.00900 * 111.00547 * 298.76529 * 6 5 4 36 36 H 1.09002 * 109.46244 * 324.97490 * 7 6 5 37 37 H 1.08997 * 109.49443 * 58.66573 * 8 7 6 38 38 H 1.08999 * 109.50163 * 298.56780 * 8 7 6 39 39 H 1.08997 * 109.58803 * 174.42439 * 9 8 7 40 40 H 1.09001 * 109.58702 * 294.70815 * 9 8 7 41 41 H 0.97000 * 119.99910 * 179.97438 * 14 13 11 42 42 H 1.08993 * 109.46528 * 293.57729 * 19 10 9 43 43 H 1.09001 * 109.70989 * 173.28787 * 19 10 9 44 44 H 1.09001 * 109.49535 * 301.34497 * 20 7 6 45 45 H 1.09009 * 109.49265 * 61.40141 * 20 7 6 46 46 H 1.07998 * 120.06480 * 359.97438 * 23 22 21 47 47 H 1.08000 * 119.94140 * 180.27510 * 24 23 22 48 48 H 1.08001 * 119.88158 * 179.73853 * 25 24 23 49 49 H 1.07998 * 119.94106 * 180.02562 * 26 25 24 50 50 H 1.08000 * 120.05660 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.0935 0.0000 4 6 3.5425 0.6771 0.0006 5 6 4.7621 1.5624 0.0002 6 7 5.3765 1.5499 1.3345 7 6 6.6373 2.3037 1.3406 8 6 7.5344 1.7878 2.4680 9 6 8.8618 2.5524 2.4494 10 7 8.5816 3.9933 2.5129 11 6 9.1690 4.7768 3.4701 12 1 9.4632 4.3451 4.4154 13 6 9.3864 6.1258 3.2254 14 7 9.5389 6.9608 4.2314 15 14 9.4627 6.7560 1.4686 16 1 8.1059 7.1745 1.0336 17 1 10.3851 7.9176 1.3991 18 1 9.9575 5.6768 0.5767 19 6 7.6559 4.5766 1.5317 20 6 6.3421 3.7892 1.5606 21 6 3.5400 -0.7313 -0.0044 22 6 4.7386 -1.6066 -0.0103 23 6 5.8170 -1.3096 -0.8409 24 6 6.9316 -2.1237 -0.8381 25 6 6.9743 -3.2391 -0.0212 26 6 5.9040 -3.5419 0.8011 27 6 4.7871 -2.7311 0.8108 28 7 2.2869 -1.1341 0.0006 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5140 31 1 -0.3634 0.8900 0.5138 32 1 1.9225 2.1202 -0.0004 33 1 4.4715 2.5811 -0.2565 34 1 5.4788 1.1932 -0.7334 35 1 4.7385 1.9068 2.0299 36 1 7.1437 2.1721 0.3844 37 1 7.7252 0.7244 2.3233 38 1 7.0391 1.9419 3.4266 39 1 9.4645 2.2592 3.3089 40 1 9.4015 2.3253 1.5300 41 1 9.6912 7.9034 4.0605 42 1 8.0961 4.5164 0.5365 43 1 7.4625 5.6194 1.7834 44 1 5.6841 4.1503 0.7702 45 1 5.8574 3.9244 2.5275 46 1 5.7827 -0.4417 -1.4826 47 1 7.7700 -1.8920 -1.4783 48 1 7.8467 -3.8759 -0.0253 49 1 5.9428 -4.4138 1.4372 50 1 3.9522 -2.9682 1.4535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611314485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = 132.568579 kcal Electronic energy + Delta-G solvation = -29515.450667 eV Core-core repulsion = 25737.838684 eV Total energy + Delta-G solvation = -3777.611983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42552 -38.89170 -38.28249 -35.48923 -33.87010 -32.41558 -31.23781 -30.95850 -30.59951 -30.26287 -29.21680 -26.99350 -25.10805 -23.76475 -22.86710 -22.62207 -22.42385 -21.35904 -20.62614 -19.99978 -19.32999 -17.27866 -16.83332 -16.50615 -15.79708 -15.39806 -15.33250 -15.01117 -14.75543 -14.44291 -14.14885 -14.05280 -13.89907 -13.56973 -13.45868 -13.25622 -13.06553 -12.99227 -12.78114 -12.68180 -12.53082 -12.13227 -12.08585 -11.75118 -11.53777 -11.23132 -11.09220 -10.82728 -10.74900 -10.65598 -10.44726 -10.14956 -9.94812 -9.77228 -9.68654 -9.45480 -8.93467 -8.81604 -8.59566 -8.32798 -8.01066 -6.92126 -5.92349 -3.26223 1.06026 1.41334 1.76815 2.26482 2.65321 3.33003 3.49812 3.53793 3.83184 4.16442 4.48713 4.56064 4.60524 4.69899 4.80625 4.87779 4.95135 5.02021 5.04812 5.05514 5.12505 5.23686 5.32725 5.40704 5.42395 5.46587 5.56179 5.62069 5.75229 5.78169 5.88827 5.93731 5.99844 6.04352 6.16182 6.24185 6.25624 6.39759 6.40888 6.48396 6.51222 6.57493 6.57680 6.70340 6.74682 6.76680 6.79048 6.94289 7.01770 7.37366 7.52158 7.66005 8.01478 8.36924 8.99213 9.76407 10.15658 11.23971 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.002988 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.158917 B = 9367.846161 C =10832.870565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.378 5.378 3 C 0.056 3.944 4 C -0.212 4.212 5 C 0.134 3.866 6 N -0.677 5.677 7 C 0.097 3.903 8 C -0.117 4.117 9 C 0.148 3.852 10 N -0.606 5.606 11 C -0.257 4.257 12 H 0.085 0.915 13 C 0.022 3.978 14 N -0.909 5.909 15 Si 0.881 3.119 16 H -0.289 1.289 17 H -0.304 1.304 18 H -0.272 1.272 19 C 0.131 3.869 20 C -0.161 4.161 21 C 0.134 3.866 22 C 0.003 3.997 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.122 4.122 27 C -0.093 4.093 28 N -0.290 5.290 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.337 0.663 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -17.757 -11.640 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.160 5.160 3 C -0.090 4.090 4 C -0.223 4.223 5 C 0.004 3.996 6 N -0.306 5.306 7 C -0.012 4.012 8 C -0.157 4.157 9 C 0.022 3.978 10 N -0.330 5.330 11 C -0.385 4.385 12 H 0.102 0.898 13 C -0.177 4.177 14 N -0.552 5.552 15 Si 0.712 3.288 16 H -0.217 1.217 17 H -0.232 1.232 18 H -0.197 1.197 19 C 0.005 3.995 20 C -0.202 4.202 21 C -0.032 4.032 22 C 0.001 3.999 23 C -0.107 4.107 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.112 4.112 28 N -0.112 5.112 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.716 -19.187 -11.660 27.992 hybrid contribution -0.012 2.342 -0.930 2.520 sum -16.728 -16.845 -12.590 26.872 Atomic orbital electron populations 1.21834 0.74155 1.04492 1.03249 1.48313 1.06460 1.03693 1.57496 1.22296 0.90719 0.93350 1.02610 1.20024 0.94149 0.93131 1.15016 1.20206 0.91945 0.95143 0.92310 1.60651 1.06389 1.58416 1.05192 1.21479 0.89955 0.90483 0.99279 1.21949 0.96893 0.98909 0.97929 1.20950 0.93801 0.83946 0.99121 1.44374 1.49062 1.03950 1.35598 1.18937 1.34728 0.90873 0.93946 0.89770 1.25285 0.99372 0.96161 0.96837 1.69857 1.52196 1.03074 1.30103 0.86964 0.76673 0.77813 0.87345 1.21735 1.23198 1.19682 1.21237 0.88769 0.97210 0.92309 1.22711 0.99504 0.96968 1.00993 1.20555 0.91082 0.92306 0.99210 1.17639 0.90988 0.93647 0.97591 1.21068 0.92557 0.98986 0.98118 1.21032 0.97837 0.95159 0.99629 1.21183 0.98398 0.97386 0.96417 1.21029 0.93707 0.99797 0.99483 1.21114 0.98147 0.93728 0.98211 1.77590 1.00788 1.07469 1.25333 0.90865 0.89346 0.89456 0.80989 0.94883 0.90458 0.84481 0.91314 0.92117 0.92228 0.91909 0.96166 0.92851 0.96102 0.91112 0.93381 0.91670 0.85998 0.85886 0.86169 0.86069 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.46 59.85 0.69 1.28 16 2 N -0.38 -3.89 4.01 -68.20 -0.27 -4.16 16 3 C 0.06 0.56 11.37 -17.26 -0.20 0.36 16 4 C -0.21 -2.51 5.64 -104.76 -0.59 -3.11 16 5 C 0.13 1.60 5.50 -4.98 -0.03 1.57 16 6 N -0.68 -9.17 6.21 -107.95 -0.67 -9.84 16 7 C 0.10 1.52 2.43 -67.67 -0.16 1.35 16 8 C -0.12 -1.99 5.69 -26.61 -0.15 -2.15 16 9 C 0.15 2.97 6.51 -3.71 -0.02 2.94 16 10 N -0.61 -14.52 2.77 -172.29 -0.48 -15.00 16 11 C -0.26 -7.25 10.02 -15.06 -0.15 -7.40 16 12 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 13 C 0.02 0.64 5.21 -17.43 -0.09 0.55 16 14 N -0.91 -28.13 13.97 55.49 0.78 -27.35 16 15 Si 0.88 22.58 24.39 -169.99 -4.15 18.44 16 16 H -0.29 -7.13 6.54 56.52 0.37 -6.76 16 17 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 18 H -0.27 -6.87 6.84 56.52 0.39 -6.48 16 19 C 0.13 2.87 4.22 -3.69 -0.02 2.85 16 20 C -0.16 -2.80 5.33 -26.61 -0.14 -2.95 16 21 C 0.13 1.75 6.66 -82.78 -0.55 1.20 16 22 C 0.00 0.04 5.73 -104.90 -0.60 -0.56 16 23 C -0.09 -1.02 8.88 -39.26 -0.35 -1.37 16 24 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 25 C -0.12 -1.15 10.04 -39.52 -0.40 -1.55 16 26 C -0.12 -1.27 10.03 -39.63 -0.40 -1.66 16 27 C -0.09 -1.11 9.78 -39.26 -0.38 -1.49 16 28 N -0.29 -3.81 12.61 33.43 0.42 -3.39 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.03 0.37 7.52 -51.93 -0.39 -0.02 16 34 H 0.08 0.92 5.57 -51.93 -0.29 0.63 16 35 H 0.34 4.60 8.53 -39.29 -0.34 4.26 16 36 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 42 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 43 H 0.07 1.71 4.57 -51.93 -0.24 1.47 16 44 H 0.05 0.74 7.52 -51.93 -0.39 0.35 16 45 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 46 H 0.12 1.32 6.28 -52.49 -0.33 0.99 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 50 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -33.70 395.48 -10.19 -43.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.84 Total: 3.22 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.95 Total: -11.76 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.22 Total: -59.75 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.15 Total: 18.44 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.70 -10.19 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611314485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.457 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds