Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35040 * 125.92894 * 2 1 4 4 C 1.35084 * 107.97783 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.07467 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46855 * 105.57978 * 5 4 3 7 7 C 1.46895 * 111.00123 * 174.80966 * 6 5 4 8 8 C 1.53039 * 109.46377 * 204.99872 * 7 6 5 9 9 C 1.53193 * 109.31315 * 178.61343 * 8 7 6 10 10 N 1.46927 * 108.89207 * 54.56712 * 9 8 7 11 11 C 1.36933 * 120.62935 * 126.46152 * 10 9 8 12 12 H 1.08002 * 120.00311 * 332.47134 * 11 10 9 13 13 C 1.38819 * 119.99873 * 152.47470 * 11 10 9 14 14 N 1.31618 * 119.99773 * 158.31203 * 13 11 10 15 15 Si 1.86796 * 119.99817 * 338.30669 * 13 11 10 16 16 H 1.48500 * 109.47007 * 91.10941 * 15 13 11 17 17 H 1.48498 * 109.47031 * 211.10769 * 15 13 11 18 18 H 1.48491 * 109.47404 * 331.10994 * 15 13 11 19 19 C 1.46963 * 118.71529 * 306.63759 * 10 9 8 20 20 C 1.53043 * 109.46219 * 84.93026 * 7 6 5 21 21 C 1.40844 * 107.85027 * 0.22674 * 4 3 2 22 22 C 1.48419 * 126.04094 * 179.77251 * 21 4 3 23 23 C 1.39324 * 120.11694 * 316.53650 * 22 21 4 24 24 C 1.38023 * 119.87792 * 179.71593 * 23 22 21 25 25 C 1.38321 * 120.11770 * 0.55693 * 24 23 22 26 26 C 1.38326 * 120.24332 * 359.72190 * 25 24 23 27 27 C 1.38021 * 120.11465 * 359.97438 * 26 25 24 28 28 N 1.31624 * 107.92225 * 359.61692 * 21 4 3 29 29 H 1.08998 * 109.47496 * 90.00465 * 1 2 3 30 30 H 1.09007 * 109.47354 * 210.00622 * 1 2 3 31 31 H 1.08998 * 109.47408 * 330.00023 * 1 2 3 32 32 H 1.07999 * 126.00799 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46831 * 345.57916 * 5 4 3 34 34 H 1.09001 * 109.47029 * 225.58158 * 5 4 3 35 35 H 1.00900 * 111.00547 * 298.76529 * 6 5 4 36 36 H 1.09002 * 109.46244 * 324.97490 * 7 6 5 37 37 H 1.08997 * 109.49443 * 58.66573 * 8 7 6 38 38 H 1.08999 * 109.50163 * 298.56780 * 8 7 6 39 39 H 1.08997 * 109.58803 * 174.42439 * 9 8 7 40 40 H 1.09001 * 109.58702 * 294.70815 * 9 8 7 41 41 H 0.97000 * 119.99910 * 179.97438 * 14 13 11 42 42 H 1.08993 * 109.46528 * 293.57729 * 19 10 9 43 43 H 1.09001 * 109.70989 * 173.28787 * 19 10 9 44 44 H 1.09001 * 109.49535 * 301.34497 * 20 7 6 45 45 H 1.09009 * 109.49265 * 61.40141 * 20 7 6 46 46 H 1.07998 * 120.06480 * 359.97438 * 23 22 21 47 47 H 1.08000 * 119.94140 * 180.27510 * 24 23 22 48 48 H 1.08001 * 119.88158 * 179.73853 * 25 24 23 49 49 H 1.07998 * 119.94106 * 180.02562 * 26 25 24 50 50 H 1.08000 * 120.05660 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.0935 0.0000 4 6 3.5425 0.6771 0.0006 5 6 4.7621 1.5624 0.0002 6 7 5.3765 1.5499 1.3345 7 6 6.6373 2.3037 1.3406 8 6 7.5344 1.7878 2.4680 9 6 8.8618 2.5524 2.4494 10 7 8.5816 3.9933 2.5129 11 6 9.1690 4.7768 3.4701 12 1 9.4632 4.3451 4.4154 13 6 9.3864 6.1258 3.2254 14 7 9.5389 6.9608 4.2314 15 14 9.4627 6.7560 1.4686 16 1 8.1059 7.1745 1.0336 17 1 10.3851 7.9176 1.3991 18 1 9.9575 5.6768 0.5767 19 6 7.6559 4.5766 1.5317 20 6 6.3421 3.7892 1.5606 21 6 3.5400 -0.7313 -0.0044 22 6 4.7386 -1.6066 -0.0103 23 6 5.8170 -1.3096 -0.8409 24 6 6.9316 -2.1237 -0.8381 25 6 6.9743 -3.2391 -0.0212 26 6 5.9040 -3.5419 0.8011 27 6 4.7871 -2.7311 0.8108 28 7 2.2869 -1.1341 0.0006 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5140 31 1 -0.3634 0.8900 0.5138 32 1 1.9225 2.1202 -0.0004 33 1 4.4715 2.5811 -0.2565 34 1 5.4788 1.1932 -0.7334 35 1 4.7385 1.9068 2.0299 36 1 7.1437 2.1721 0.3844 37 1 7.7252 0.7244 2.3233 38 1 7.0391 1.9419 3.4266 39 1 9.4645 2.2592 3.3089 40 1 9.4015 2.3253 1.5300 41 1 9.6912 7.9034 4.0605 42 1 8.0961 4.5164 0.5365 43 1 7.4625 5.6194 1.7834 44 1 5.6841 4.1503 0.7702 45 1 5.8574 3.9244 2.5275 46 1 5.7827 -0.4417 -1.4826 47 1 7.7700 -1.8920 -1.4783 48 1 7.8467 -3.8759 -0.0253 49 1 5.9428 -4.4138 1.4372 50 1 3.9522 -2.9682 1.4535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611314485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = 111.294847 kcal Electronic energy + Delta-G solvation = -29516.373165 eV Core-core repulsion = 25737.838684 eV Total energy + Delta-G solvation = -3778.534481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21352 -39.77078 -39.65440 -36.85777 -34.81192 -34.05965 -32.54983 -31.84990 -31.72366 -31.51069 -30.42302 -27.85754 -26.48702 -25.09026 -24.20495 -23.64007 -23.35083 -22.82258 -21.42916 -21.08877 -20.56049 -18.85283 -17.97981 -17.36911 -17.20901 -16.50492 -16.17474 -16.03440 -15.87060 -15.73010 -15.58284 -15.30964 -14.96174 -14.76979 -14.53725 -14.41237 -14.25155 -14.07336 -13.84444 -13.72916 -13.61512 -13.43574 -13.24573 -13.06003 -12.75259 -12.53929 -12.30508 -12.21599 -12.02166 -11.92749 -11.87499 -11.69892 -11.54667 -11.33219 -11.19835 -10.69772 -10.55304 -9.74662 -9.64034 -9.20869 -9.05763 -8.88959 -8.15790 -5.46033 0.24501 0.60090 1.00649 1.29880 1.41949 1.51752 1.62296 1.80737 2.43101 3.02207 3.06413 3.31145 3.43784 3.57556 3.86860 3.92644 4.08341 4.11512 4.13568 4.18800 4.27203 4.34928 4.36038 4.43724 4.45837 4.51791 4.59924 4.64577 4.68038 4.69014 4.73271 4.79024 4.86320 4.95404 4.98802 5.02145 5.07047 5.17979 5.22240 5.23130 5.25261 5.29043 5.45021 5.54315 5.69483 5.70162 5.75914 5.89459 6.12285 6.14211 6.16439 6.26992 6.57737 6.71727 6.94737 7.65316 8.06181 9.04514 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.002988 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.158917 B = 9367.846161 C =10832.870565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.377 5.377 3 C 0.066 3.934 4 C -0.233 4.233 5 C 0.140 3.860 6 N -0.675 5.675 7 C 0.110 3.890 8 C -0.105 4.105 9 C 0.144 3.856 10 N -0.620 5.620 11 C -0.248 4.248 12 H 0.048 0.952 13 C -0.036 4.036 14 N -0.958 5.958 15 Si 0.948 3.052 16 H -0.272 1.272 17 H -0.311 1.311 18 H -0.262 1.262 19 C 0.125 3.875 20 C -0.149 4.149 21 C 0.119 3.881 22 C -0.014 4.014 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.111 4.111 28 N -0.325 5.325 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.207 0.793 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.338 0.662 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.126 0.874 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.141 0.859 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 -18.470 -14.094 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.159 5.159 3 C -0.081 4.081 4 C -0.245 4.245 5 C 0.010 3.990 6 N -0.304 5.304 7 C 0.000 4.000 8 C -0.144 4.144 9 C 0.019 3.981 10 N -0.345 5.345 11 C -0.378 4.378 12 H 0.066 0.934 13 C -0.231 4.231 14 N -0.605 5.605 15 Si 0.777 3.223 16 H -0.199 1.199 17 H -0.240 1.240 18 H -0.187 1.187 19 C -0.001 4.001 20 C -0.190 4.190 21 C -0.046 4.046 22 C -0.016 4.016 23 C -0.118 4.118 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.131 4.131 28 N -0.148 5.148 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.160 0.840 48 H 0.162 0.838 49 H 0.158 0.842 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.102 -19.957 -14.148 30.432 hybrid contribution 0.325 2.452 -0.107 2.476 sum -17.777 -17.504 -14.254 28.733 Atomic orbital electron populations 1.22194 0.71804 1.05894 1.04631 1.48695 1.07824 1.03133 1.56245 1.22813 0.90163 0.94592 1.00529 1.20085 0.94938 0.92634 1.16820 1.20175 0.91973 0.95798 0.91012 1.60586 1.05854 1.57615 1.06387 1.21269 0.90790 0.89218 0.98685 1.21778 0.95396 0.99293 0.97955 1.21098 0.95610 0.82061 0.99296 1.44504 1.49651 1.05098 1.35235 1.18872 1.33874 0.91338 0.93696 0.93399 1.25918 1.00028 0.96475 1.00668 1.69990 1.54752 1.03379 1.32353 0.85887 0.77188 0.76968 0.82300 1.19865 1.24017 1.18687 1.21315 0.90463 0.96512 0.91782 1.22588 0.97308 0.97684 1.01393 1.20760 0.91204 0.93105 0.99501 1.17850 0.91483 0.94085 0.98225 1.21200 0.92777 0.99569 0.98268 1.21340 0.98021 0.95001 0.99756 1.21514 0.98968 0.97495 0.95760 1.21307 0.93292 1.00078 0.99683 1.21216 0.98750 0.94381 0.98732 1.77519 1.01366 1.09258 1.26696 0.89456 0.89389 0.86671 0.77655 0.93617 0.90491 0.84418 0.90525 0.90542 0.93832 0.93060 0.94639 0.92995 0.94991 0.93604 0.90531 0.92996 0.85591 0.83973 0.83783 0.84165 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.46 127.77 1.46 2.31 16 2 N -0.38 -7.04 4.01 -369.68 -1.48 -8.52 16 3 C 0.07 1.14 11.37 83.47 0.95 2.09 16 4 C -0.23 -5.07 5.64 -19.95 -0.11 -5.19 16 5 C 0.14 2.94 5.50 85.56 0.47 3.41 16 6 N -0.68 -16.61 6.21 -495.45 -3.08 -19.69 16 7 C 0.11 3.14 2.43 44.94 0.11 3.25 16 8 C -0.10 -3.39 5.69 30.67 0.17 -3.22 16 9 C 0.14 5.64 6.51 86.36 0.56 6.20 16 10 N -0.62 -29.39 2.77 -699.01 -1.93 -31.32 16 11 C -0.25 -14.33 10.02 84.04 0.84 -13.49 16 12 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 13 C -0.04 -2.15 5.21 84.86 0.44 -1.71 16 14 N -0.96 -61.04 13.97 21.65 0.30 -60.73 16 15 Si 0.95 46.79 24.39 68.60 1.67 48.47 16 16 H -0.27 -12.55 6.54 99.48 0.65 -11.90 16 17 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 18 H -0.26 -12.41 6.84 99.48 0.68 -11.72 16 19 C 0.12 5.20 4.22 86.35 0.36 5.57 16 20 C -0.15 -4.80 5.33 30.67 0.16 -4.64 16 21 C 0.12 3.02 6.66 42.53 0.28 3.30 16 22 C -0.01 -0.36 5.73 -20.04 -0.11 -0.47 16 23 C -0.10 -2.18 8.88 22.48 0.20 -1.98 16 24 C -0.12 -2.34 10.03 22.24 0.22 -2.12 16 25 C -0.12 -2.13 10.04 22.31 0.22 -1.91 16 26 C -0.13 -2.46 10.03 22.24 0.22 -2.23 16 27 C -0.11 -2.64 9.78 22.48 0.22 -2.42 16 28 N -0.33 -8.36 12.61 -48.16 -0.61 -8.97 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.05 0.85 7.52 -2.39 -0.02 0.84 16 34 H 0.08 1.63 5.57 -2.39 -0.01 1.62 16 35 H 0.34 8.42 8.53 -89.69 -0.77 7.66 16 36 H 0.08 2.13 7.72 -2.39 -0.02 2.11 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 43 H 0.05 2.14 4.57 -2.39 -0.01 2.13 16 44 H 0.08 2.05 7.52 -2.39 -0.02 2.04 16 45 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.13 2.55 6.28 -2.91 -0.02 2.53 16 47 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 48 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 49 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 50 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -74.97 395.48 1.66 -73.31 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.09 Total: 20.72 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 6.69 Total: -13.26 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -6.80 Total: -129.24 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.67 Total: 48.47 kcal Total: -74.97 1.66 -73.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611314485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.609 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds