Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48525 * 110.99889 * 2 1 4 4 C 1.54940 * 103.22617 * 200.27733 * 3 2 1 5 5 C 1.54591 * 102.92095 * 37.41489 * 4 3 2 6 6 H 1.09000 * 110.39389 * 97.00620 * 5 4 3 7 7 N 1.46907 * 110.30844 * 219.12581 * 5 4 3 8 8 C 1.46896 * 110.99958 * 202.16833 * 7 5 4 9 9 C 1.50709 * 109.46931 * 180.02562 * 8 7 5 10 10 C 1.35084 * 126.07456 * 260.02366 * 9 8 7 11 11 N 1.35037 * 107.97878 * 179.73882 * 10 9 8 12 12 C 1.46503 * 125.93210 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47156 * 124.99624 * 12 11 10 14 14 H 1.08001 * 120.00482 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99752 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99817 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99813 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46805 * 90.00031 * 17 15 13 19 19 H 1.48494 * 109.46911 * 209.99721 * 17 15 13 20 20 H 1.48503 * 109.46969 * 329.99655 * 17 15 13 21 21 N 1.40070 * 108.13914 * 359.97438 * 11 10 9 22 22 C 1.31629 * 108.11074 * 359.97438 * 21 11 10 23 23 C 1.48411 * 126.03984 * 179.97438 * 22 21 11 24 24 C 1.39326 * 120.11755 * 144.72934 * 23 22 21 25 25 C 1.38023 * 119.87747 * 179.72336 * 24 23 22 26 26 C 1.38317 * 120.12028 * 0.55209 * 25 24 23 27 27 C 1.38321 * 120.24220 * 359.72153 * 26 25 24 28 28 C 1.38021 * 120.11776 * 0.02562 * 27 26 25 29 29 C 1.47900 * 110.99912 * 242.60096 * 2 1 3 30 30 H 1.09004 * 109.47074 * 177.39518 * 1 2 3 31 31 H 1.08991 * 109.46971 * 297.39622 * 1 2 3 32 32 H 1.09002 * 109.46592 * 57.40239 * 1 2 3 33 33 H 1.09000 * 110.66925 * 318.70725 * 3 2 1 34 34 H 1.09000 * 110.66981 * 81.84601 * 3 2 1 35 35 H 1.08999 * 110.72464 * 279.05339 * 4 3 2 36 36 H 1.08999 * 110.72724 * 155.77525 * 4 3 2 37 37 H 1.00897 * 110.99866 * 326.12610 * 7 5 4 38 38 H 1.09000 * 109.47364 * 60.00066 * 8 7 5 39 39 H 1.09004 * 109.47391 * 299.99941 * 8 7 5 40 40 H 1.08001 * 126.01133 * 359.73638 * 10 9 8 41 41 H 1.08999 * 109.46814 * 244.99798 * 12 11 10 42 42 H 1.09004 * 109.46473 * 4.99231 * 12 11 10 43 43 H 0.96999 * 119.99714 * 180.02562 * 16 15 13 44 44 H 1.08004 * 120.06356 * 359.97438 * 24 23 22 45 45 H 1.08005 * 119.94046 * 180.27790 * 25 24 23 46 46 H 1.08003 * 119.88316 * 179.74454 * 26 25 24 47 47 H 1.08002 * 119.94490 * 180.02562 * 27 26 25 48 48 H 1.08003 * 120.06277 * 179.97438 * 28 27 26 49 49 H 1.08991 * 109.92113 * 26.49373 * 29 2 1 50 50 H 1.08997 * 110.08356 * 265.28536 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1053 -1.5930 6 1 3.2144 0.5470 -2.5859 7 7 4.4422 -0.8150 -1.5403 8 6 4.6074 -1.5230 -2.8168 9 6 5.7873 -2.4561 -2.7245 10 6 7.0274 -2.2202 -3.2052 11 7 7.7966 -3.2923 -2.9182 12 6 9.2122 -3.4512 -3.2607 13 6 10.0001 -3.7541 -2.0123 14 1 9.4969 -3.8211 -1.0590 15 6 11.3636 -3.9446 -2.0869 16 7 11.9764 -3.8626 -3.2476 17 14 12.3404 -4.3193 -0.5393 18 1 12.3966 -5.7888 -0.3332 19 1 13.7191 -3.7866 -0.6831 20 1 11.6821 -3.6803 0.6284 21 7 7.0065 -4.2256 -2.2352 22 6 5.7947 -3.7259 -2.1152 23 6 4.6397 -4.3850 -1.4562 24 6 3.7125 -3.6248 -0.7465 25 6 2.6371 -4.2422 -0.1404 26 6 2.4853 -5.6143 -0.2268 27 6 3.4059 -6.3744 -0.9252 28 6 4.4821 -5.7668 -1.5396 29 6 1.9991 -0.6354 -1.2259 30 1 -0.3633 -1.0266 -0.0467 31 1 -0.3633 0.4728 0.9123 32 1 -0.3632 0.5537 -0.8658 33 1 1.4238 2.0204 -0.6730 34 1 2.0041 1.7976 1.0095 35 1 4.1115 0.8836 0.2788 36 1 3.8124 2.1351 -0.9715 37 1 5.2876 -0.3267 -1.2855 38 1 4.7773 -0.7996 -3.6142 39 1 3.7065 -2.0973 -3.0330 40 1 7.3475 -1.3306 -3.7273 41 1 9.3246 -4.2717 -3.9693 42 1 9.5829 -2.5298 -3.7098 43 1 12.9356 -3.9970 -3.3002 44 1 3.8328 -2.5539 -0.6743 45 1 1.9153 -3.6533 0.4062 46 1 1.6446 -6.0938 0.2525 47 1 3.2824 -7.4454 -0.9900 48 1 5.2007 -6.3613 -2.0844 49 1 1.2760 -0.5404 -2.0358 50 1 2.2117 -1.6881 -1.0399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733327019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = 94.357770 kcal Electronic energy + Delta-G solvation = -29457.103200 eV Core-core repulsion = 25677.834272 eV Total energy + Delta-G solvation = -3779.268928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07575 -40.04060 -39.56373 -36.63791 -35.62473 -33.92153 -32.66743 -31.67190 -31.52919 -30.72402 -29.23744 -28.44108 -26.47309 -25.42472 -24.78253 -23.37518 -23.06836 -22.12327 -21.24740 -21.11899 -20.47249 -18.66640 -17.95171 -17.57492 -17.07729 -16.68557 -16.39264 -16.10494 -15.82533 -15.62071 -15.41250 -15.24366 -15.01447 -14.76157 -14.57071 -14.15551 -14.09254 -13.98791 -13.78318 -13.62403 -13.35621 -13.25284 -13.03406 -12.80040 -12.76504 -12.42125 -12.30975 -12.26740 -12.15779 -12.03869 -11.96414 -11.77960 -11.68812 -11.67382 -11.24387 -10.77479 -10.48364 -9.69917 -9.52640 -9.33260 -9.18481 -8.99970 -8.36864 -6.50875 0.29250 0.65166 1.21796 1.34462 1.36467 1.47466 1.89061 1.97327 2.32241 2.94626 3.07719 3.19508 3.38611 3.69565 3.76335 3.86573 3.92241 4.19715 4.25442 4.28924 4.31084 4.37318 4.42481 4.48485 4.52294 4.59743 4.61836 4.71022 4.74451 4.78686 4.84222 4.85343 4.90683 4.98441 5.02774 5.08846 5.12366 5.14303 5.20863 5.25024 5.28413 5.40798 5.54066 5.58843 5.75599 5.77562 5.89276 5.94698 5.98925 6.18499 6.21360 6.26445 6.30851 6.51776 6.61998 7.03815 7.19376 8.70754 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.003053 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.767570 B = 9167.877485 C =10556.322510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.532 5.532 3 C 0.037 3.963 4 C -0.123 4.123 5 C 0.077 3.923 6 H 0.059 0.941 7 N -0.678 5.678 8 C 0.155 3.845 9 C -0.240 4.240 10 C 0.050 3.950 11 N -0.350 5.350 12 C 0.273 3.727 13 C -0.547 4.547 14 H 0.048 0.952 15 C 0.020 3.980 16 N -0.920 5.920 17 Si 0.969 3.031 18 H -0.275 1.275 19 H -0.268 1.268 20 H -0.273 1.273 21 N -0.325 5.325 22 C 0.095 3.905 23 C -0.029 4.029 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.131 4.131 28 C -0.121 4.121 29 C 0.036 3.964 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.347 0.653 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.194 0.806 41 H 0.016 0.984 42 H 0.057 0.943 43 H 0.273 0.727 44 H 0.174 0.826 45 H 0.144 0.856 46 H 0.150 0.850 47 H 0.140 0.860 48 H 0.100 0.900 49 H 0.044 0.956 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.509 9.942 3.742 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.257 5.257 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.033 4.033 6 H 0.077 0.923 7 N -0.310 5.310 8 C 0.026 3.974 9 C -0.252 4.252 10 C -0.098 4.098 11 N -0.130 5.130 12 C 0.154 3.846 13 C -0.585 4.585 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.559 5.559 17 Si 0.793 3.207 18 H -0.200 1.200 19 H -0.193 1.193 20 H -0.197 1.197 21 N -0.149 5.149 22 C -0.068 4.068 23 C -0.031 4.031 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.149 4.149 28 C -0.140 4.140 29 C -0.093 4.093 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.166 0.834 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.211 0.789 41 H 0.034 0.966 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.191 0.809 45 H 0.162 0.838 46 H 0.168 0.832 47 H 0.158 0.842 48 H 0.119 0.881 49 H 0.062 0.938 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.553 8.147 4.569 25.338 hybrid contribution 0.898 1.130 -1.178 1.863 sum -22.655 9.277 3.391 24.715 Atomic orbital electron populations 1.22550 0.87191 1.02367 1.01213 1.64729 1.08752 1.15264 1.36932 1.23218 0.94528 0.89790 1.01526 1.22672 0.97308 0.97917 0.98183 1.22413 0.90954 0.91632 0.98277 0.92284 1.60448 1.07824 1.31549 1.31229 1.20005 0.93632 0.93556 0.90242 1.20001 0.96207 0.97407 1.11572 1.22845 0.91237 0.93910 1.01831 1.49078 1.10540 1.12433 1.40910 1.19256 0.71314 0.97885 0.96123 1.21366 0.92961 1.50412 0.93750 0.93335 1.25715 0.98167 0.94217 0.99937 1.69986 1.10922 1.49345 1.25604 0.85384 0.77838 0.78615 0.78829 1.20013 1.19304 1.19738 1.77579 1.02926 1.16929 1.17454 1.21060 0.91862 0.94610 0.99306 1.18059 0.92792 0.92963 0.99328 1.22358 0.92618 1.03448 0.94405 1.21382 0.98029 0.95083 0.99757 1.21556 0.99346 0.94207 0.98233 1.21256 0.94386 1.00858 0.98371 1.21302 0.98439 0.93941 1.00337 1.23112 0.94708 1.00710 0.90736 0.91138 0.90687 0.95133 0.93010 0.89607 0.90681 0.89628 0.83389 0.92990 0.90740 0.78875 0.96565 0.92544 0.91783 0.80926 0.83825 0.83227 0.84227 0.88135 0.93769 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.40 127.69 1.20 1.40 16 2 N -0.53 -8.87 5.55 -909.18 -5.05 -13.92 16 3 C 0.04 0.52 6.56 86.65 0.57 1.09 16 4 C -0.12 -1.79 6.52 31.80 0.21 -1.59 16 5 C 0.08 1.29 3.31 45.79 0.15 1.44 16 6 H 0.06 0.90 7.86 -2.39 -0.02 0.88 16 7 N -0.68 -14.51 3.89 -491.02 -1.91 -16.42 16 8 C 0.15 3.74 4.93 85.56 0.42 4.16 16 9 C -0.24 -8.16 5.59 -19.95 -0.11 -8.27 16 10 C 0.05 1.86 11.33 83.47 0.95 2.81 16 11 N -0.35 -16.55 3.67 -351.92 -1.29 -17.84 16 12 C 0.27 14.45 6.26 85.63 0.54 14.98 16 13 C -0.55 -31.67 9.23 25.60 0.24 -31.44 16 14 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 15 C 0.02 1.13 5.46 84.66 0.46 1.60 16 16 N -0.92 -52.87 13.29 21.45 0.28 -52.59 16 17 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 N -0.33 -15.92 12.40 -48.16 -0.60 -16.52 16 22 C 0.10 3.87 6.74 42.52 0.29 4.15 16 23 C -0.03 -1.04 5.80 -20.04 -0.12 -1.16 16 24 C -0.11 -3.17 7.85 22.48 0.18 -2.99 16 25 C -0.12 -2.93 9.74 22.24 0.22 -2.71 16 26 C -0.12 -2.54 10.04 22.31 0.22 -2.31 16 27 C -0.13 -3.40 10.03 22.24 0.22 -3.18 16 28 C -0.12 -4.07 9.75 22.48 0.22 -3.85 16 29 C 0.04 0.62 6.40 86.45 0.55 1.18 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.36 8.00 -2.39 -0.02 0.34 16 33 H 0.05 0.62 7.96 -2.39 -0.02 0.60 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.31 8.00 -2.39 -0.02 1.29 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.35 7.64 8.39 -89.70 -0.75 6.88 16 38 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 39 H 0.07 1.82 7.75 -2.39 -0.02 1.80 16 40 H 0.19 5.61 8.06 -2.91 -0.02 5.59 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 2.89 8.07 -2.38 -0.02 2.87 16 43 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.17 4.82 3.43 -2.91 -0.01 4.81 16 45 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 46 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 48 H 0.10 3.70 8.06 -2.91 -0.02 3.68 16 49 H 0.04 0.71 7.73 -2.39 -0.02 0.69 16 50 H 0.09 1.78 5.19 -2.39 -0.01 1.76 16 Total: -1.00 -68.36 402.15 0.05 -68.31 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.19 Total: 26.93 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 6.40 Total: -24.69 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -8.56 Total: -117.29 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.36 0.05 -68.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733327019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.665 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds