Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 O 1.42974 * 109.47408 * 120.00262 * 2 1 3 5 5 C 1.43092 * 113.76743 * 61.20130 * 4 2 1 6 6 C 1.53251 * 108.94302 * 57.97563 * 5 4 2 7 7 C 1.53000 * 109.57457 * 185.53731 * 6 5 4 8 8 C 1.50701 * 109.58047 * 65.28041 * 6 5 4 9 9 O 1.21280 * 119.99250 * 0.02562 * 8 6 5 10 10 N 1.34771 * 120.00333 * 180.02562 * 8 6 5 11 11 C 1.46495 * 120.00016 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47051 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49668 * 305.05231 * 12 11 10 14 14 C 1.53047 * 109.49534 * 184.99831 * 12 11 10 15 15 C 1.53039 * 109.53698 * 178.68261 * 14 12 11 16 16 C 1.53192 * 109.31794 * 61.35851 * 15 14 12 17 17 N 1.46933 * 108.77675 * 305.37134 * 16 15 14 18 18 C 1.36932 * 120.62631 * 233.60341 * 17 16 15 19 19 H 1.07999 * 119.99579 * 151.81982 * 18 17 16 20 20 C 1.38811 * 120.00158 * 331.82686 * 18 17 16 21 21 N 1.31613 * 120.00020 * 343.07554 * 20 18 17 22 22 Si 1.86798 * 119.99923 * 163.08576 * 20 18 17 23 23 H 1.48503 * 109.47705 * 59.99335 * 22 20 18 24 24 H 1.48499 * 109.47223 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47114 * 299.99538 * 22 20 18 26 26 C 1.46921 * 118.73663 * 53.60155 * 17 16 15 27 27 C 1.53260 * 108.84444 * 305.47164 * 6 5 4 28 28 O 1.42972 * 109.46962 * 239.99834 * 2 1 3 29 29 H 1.09001 * 109.46508 * 299.99719 * 1 2 3 30 30 H 1.08994 * 109.47070 * 59.99933 * 1 2 3 31 31 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46998 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47279 * 300.00050 * 3 2 1 34 34 H 1.08998 * 109.47113 * 59.99874 * 3 2 1 35 35 H 1.08999 * 109.55835 * 298.13267 * 5 4 2 36 36 H 1.09001 * 109.55507 * 177.81186 * 5 4 2 37 37 H 1.09004 * 109.47127 * 299.73972 * 7 6 5 38 38 H 1.09002 * 109.47468 * 59.74332 * 7 6 5 39 39 H 1.09003 * 109.47400 * 179.73972 * 7 6 5 40 40 H 0.97002 * 120.00150 * 359.97438 * 10 8 6 41 41 H 1.08999 * 109.47980 * 59.99568 * 11 10 8 42 42 H 1.09006 * 109.46641 * 299.99294 * 11 10 8 43 43 H 1.09002 * 109.45765 * 298.69580 * 14 12 11 44 44 H 1.08991 * 109.46106 * 58.67206 * 14 12 11 45 45 H 1.08997 * 109.50074 * 181.31596 * 15 14 12 46 46 H 1.09002 * 109.49753 * 301.40931 * 15 14 12 47 47 H 1.09002 * 109.58071 * 65.15307 * 16 15 14 48 48 H 1.08995 * 109.59160 * 185.57961 * 16 15 14 49 49 H 0.97003 * 119.99932 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.58167 * 186.60890 * 26 17 16 51 51 H 1.08994 * 109.58874 * 66.18519 * 26 17 16 52 52 H 1.09003 * 109.55918 * 174.36430 * 27 6 5 53 53 H 1.09004 * 109.55942 * 294.68607 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0067 -0.6740 1.1673 5 6 1.6042 -2.0449 1.2465 6 6 2.1043 -2.7830 0.0000 7 6 1.5656 -4.2150 0.0016 8 6 3.6111 -2.8103 -0.0001 9 8 4.2269 -2.2916 0.9068 10 7 4.2741 -3.4112 -1.0079 11 6 5.7388 -3.4383 -1.0077 12 6 6.2355 -4.1744 -2.2536 13 1 5.7820 -5.1647 -2.2960 14 6 7.7585 -4.3123 -2.1922 15 6 8.2531 -5.0773 -3.4219 16 6 7.8892 -4.2933 -4.6867 17 7 6.4435 -4.0304 -4.6806 18 6 5.6655 -4.3849 -5.7503 19 1 4.6223 -4.6226 -5.6039 20 6 6.2178 -4.4388 -7.0226 21 7 7.3663 -3.8443 -7.2673 22 14 5.3309 -5.3550 -8.3877 23 1 3.9926 -4.7484 -8.6029 24 1 6.1225 -5.2637 -9.6407 25 1 5.1721 -6.7810 -8.0048 26 6 5.8488 -3.3800 -3.5051 27 6 1.6041 -2.0448 -1.2465 28 8 2.0065 -0.6740 -1.1673 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.5168 -2.1038 1.2937 36 1 2.0350 -2.5007 2.1379 37 1 1.9188 -4.7351 0.8922 38 1 0.4758 -4.1934 0.0017 39 1 1.9186 -4.7370 -0.8878 40 1 3.7815 -3.8265 -1.7331 41 1 6.0927 -3.9542 -0.1152 42 1 6.1210 -2.4174 -1.0128 43 1 8.2124 -3.3215 -2.1742 44 1 8.0377 -4.8562 -1.2899 45 1 9.3352 -5.1956 -3.3660 46 1 7.7806 -6.0591 -3.4540 47 1 8.4323 -3.3483 -4.6997 48 1 8.1503 -4.8794 -5.5678 49 1 7.7520 -3.8818 -8.1565 50 1 4.7636 -3.3636 -3.6066 51 1 6.2255 -2.3607 -3.4218 52 1 2.0348 -2.5007 -2.1380 53 1 0.5167 -2.1038 -1.2937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775607756.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -141.237164 kcal Electronic energy + Delta-G solvation = -32186.151653 eV Core-core repulsion = 28057.064892 eV Total energy + Delta-G solvation = -4129.086762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12530 -40.28852 -39.27017 -36.79765 -36.19509 -35.88487 -34.59398 -32.54823 -32.30499 -31.74789 -28.78018 -27.43762 -27.20190 -27.00524 -26.77258 -24.15731 -23.71898 -22.59143 -22.03530 -20.92322 -19.98084 -18.75356 -18.65330 -17.80368 -17.36652 -17.07884 -16.82397 -16.51674 -16.17340 -16.04362 -15.66242 -15.61645 -15.16182 -14.97357 -14.74659 -14.53951 -14.37057 -14.00700 -13.76239 -13.67995 -13.60703 -13.29111 -13.27935 -13.19999 -13.07900 -13.03332 -13.01680 -12.84775 -12.76774 -12.48005 -12.30757 -12.04392 -11.97876 -11.95530 -11.83873 -11.59558 -11.34692 -11.11854 -10.94904 -10.88044 -10.52150 -10.38703 -10.04744 -8.67710 -7.85919 -5.32437 1.48173 1.50624 1.57290 1.64715 2.16254 2.52089 2.60461 2.74817 3.29004 3.35748 3.46780 3.58343 3.71617 3.84642 3.89765 3.97260 3.98048 4.01263 4.05336 4.28508 4.34332 4.39235 4.55611 4.56493 4.58917 4.62624 4.65890 4.72147 4.73345 4.74198 4.76685 4.81800 4.84506 4.86777 4.89806 5.00151 5.08897 5.09994 5.17393 5.20588 5.23325 5.31748 5.37923 5.48794 5.56557 5.66562 5.77354 5.91341 6.26597 6.39260 6.54664 7.15283 7.26003 7.86145 8.39248 9.20491 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003050 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.048788 B = 9178.557323 C =10058.066424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.248 3.752 3 C -0.130 4.130 4 O -0.397 6.397 5 C 0.078 3.922 6 C -0.147 4.147 7 C -0.136 4.136 8 C 0.526 3.474 9 O -0.572 6.572 10 N -0.718 5.718 11 C 0.140 3.860 12 C -0.098 4.098 13 H 0.080 0.920 14 C -0.098 4.098 15 C -0.129 4.129 16 C 0.173 3.827 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.072 0.928 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.156 3.844 27 C 0.062 3.938 28 O -0.407 6.407 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.408 0.592 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.056 0.944 47 H -0.011 1.011 48 H 0.053 0.947 49 H 0.249 0.751 50 H 0.055 0.945 51 H -0.002 1.002 52 H 0.102 0.898 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.037 1.035 16.985 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.172 3.828 3 C -0.187 4.187 4 O -0.317 6.317 5 C 0.001 3.999 6 C -0.151 4.151 7 C -0.193 4.193 8 C 0.313 3.687 9 O -0.451 6.451 10 N -0.369 5.369 11 C 0.016 3.984 12 C -0.118 4.118 13 H 0.099 0.901 14 C -0.136 4.136 15 C -0.168 4.168 16 C 0.047 3.953 17 N -0.331 5.331 18 C -0.394 4.394 19 H 0.090 0.910 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.030 3.970 27 C -0.015 4.015 28 O -0.329 6.329 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.008 0.992 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.016 0.984 52 H 0.120 0.880 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.284 1.617 17.467 23.266 hybrid contribution -0.082 -0.495 -1.506 1.588 sum -15.366 1.122 15.961 22.184 Atomic orbital electron populations 1.22780 0.93350 1.04308 1.04975 1.23156 0.93001 0.91204 0.75409 1.21657 1.01571 0.91072 1.04400 1.88219 1.76785 1.23994 1.42744 1.22663 0.99938 0.80851 0.96428 1.22177 0.91653 1.01181 1.00099 1.21783 1.03394 0.90263 1.03907 1.20636 0.90345 0.76579 0.81181 1.90678 1.70454 1.46184 1.37786 1.45960 1.07416 1.58001 1.25553 1.21200 0.79669 0.99769 0.97756 1.21702 0.97156 0.99657 0.93300 0.90122 1.21342 0.93940 1.00208 0.98080 1.21992 1.00167 0.99019 0.95602 1.20635 0.83448 0.95290 0.95910 1.44300 1.04514 1.68596 1.15717 1.19523 0.94711 1.38951 0.86197 0.91033 1.25833 0.98716 1.00681 0.99437 1.70200 1.21619 1.45449 1.21064 0.85336 0.77899 0.79026 0.78157 1.19935 1.22405 1.20145 1.20963 0.96580 0.92729 0.86712 1.22951 1.01364 0.80894 0.96273 1.88194 1.76944 1.24149 1.43567 0.89336 0.89623 0.90541 0.93560 0.89068 0.88709 0.88775 0.88846 0.91245 0.88185 0.90604 0.75599 0.91083 0.93651 0.93083 0.90118 0.91256 0.92561 0.99245 0.92863 0.94205 0.92628 0.98390 0.88029 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 8.11 71.98 0.58 -2.14 16 2 C 0.25 5.53 1.50 30.59 0.05 5.57 16 3 C -0.13 -2.70 9.21 71.98 0.66 -2.04 16 4 O -0.40 -10.45 9.59 -120.80 -1.16 -11.61 16 5 C 0.08 1.55 4.82 72.07 0.35 1.90 16 6 C -0.15 -2.89 0.64 -52.76 -0.03 -2.92 16 7 C -0.14 -1.64 8.40 71.98 0.60 -1.04 16 8 C 0.53 14.97 6.13 87.66 0.54 15.51 16 9 O -0.57 -21.26 15.43 10.58 0.16 -21.09 16 10 N -0.72 -19.18 5.09 -463.07 -2.36 -21.53 16 11 C 0.14 4.16 5.07 86.38 0.44 4.59 16 12 C -0.10 -3.13 2.37 -10.72 -0.03 -3.15 16 13 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.10 -3.10 5.17 30.62 0.16 -2.94 16 15 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 16 C 0.17 8.41 5.30 86.36 0.46 8.86 16 17 N -0.61 -30.25 2.99 -699.11 -2.09 -32.35 16 18 C -0.26 -14.21 9.58 84.03 0.81 -13.41 16 19 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 21 N -0.94 -55.76 11.20 21.65 0.24 -55.52 16 22 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.16 6.37 5.60 86.36 0.48 6.85 16 27 C 0.06 1.19 5.23 72.07 0.38 1.56 16 28 O -0.41 -10.68 10.10 -126.22 -1.28 -11.96 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.08 0.84 5.11 -2.39 -0.01 0.83 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.19 6.53 -2.39 -0.02 1.17 16 36 H 0.09 2.00 7.95 -2.39 -0.02 1.98 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.86 7.56 -2.39 -0.02 0.85 16 40 H 0.41 9.45 6.53 -92.71 -0.61 8.85 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.05 2.92 6.06 -2.39 -0.01 2.91 16 49 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 50 H 0.06 2.15 7.15 -2.38 -0.02 2.13 16 51 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 52 H 0.10 1.97 7.48 -2.39 -0.02 1.95 16 53 H 0.10 1.26 6.53 -2.38 -0.02 1.24 16 Total: -1.00 -74.96 400.80 1.88 -73.08 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.28 Total: 24.64 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.05 Total: 10.24 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.21 Total: -109.40 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -2.27 Total: -44.66 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.96 1.88 -73.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775607756.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.154 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds