Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00166 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47309 * 300.00100 * 9 8 6 11 11 C 1.53000 * 109.47155 * 60.00246 * 9 8 6 12 12 C 1.52995 * 109.47504 * 59.99706 * 11 9 8 13 13 C 1.53003 * 109.47085 * 60.00050 * 12 11 9 14 14 C 1.53000 * 109.46909 * 300.00314 * 13 12 11 15 15 C 1.52995 * 109.47131 * 59.99903 * 14 13 12 16 16 H 1.09002 * 109.47199 * 59.99984 * 15 14 13 17 17 C 1.50709 * 109.47107 * 179.97438 * 15 14 13 18 18 O 1.21284 * 119.99723 * 119.99927 * 17 15 14 19 19 N 1.34774 * 120.00231 * 300.00597 * 17 15 14 20 20 C 1.46495 * 119.99967 * 179.97438 * 19 17 15 21 21 C 1.50705 * 109.47160 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00049 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00097 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99949 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00181 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46758 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47060 * 119.99792 * 25 23 21 28 28 H 1.48502 * 109.47159 * 239.99840 * 25 23 21 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.97000 * 119.99457 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.47534 * 60.00252 * 10 9 8 40 40 H 1.09002 * 109.47199 * 180.02562 * 10 9 8 41 41 H 1.08998 * 109.47026 * 299.99573 * 10 9 8 42 42 H 1.09006 * 109.47540 * 180.02562 * 11 9 8 43 43 H 1.09003 * 109.46810 * 299.99643 * 11 9 8 44 44 H 1.09002 * 109.47045 * 300.00149 * 12 11 9 45 45 H 1.08999 * 109.47346 * 180.02562 * 12 11 9 46 46 H 1.08994 * 109.47314 * 180.02562 * 13 12 11 47 47 H 1.09002 * 109.47099 * 60.00132 * 13 12 11 48 48 H 1.08993 * 109.47217 * 299.99593 * 14 13 12 49 49 H 1.09003 * 109.46810 * 180.02562 * 14 13 12 50 50 H 0.97003 * 119.99810 * 359.97438 * 19 17 15 51 51 H 1.08991 * 109.47378 * 299.99924 * 20 19 17 52 52 H 1.09004 * 109.47126 * 59.99559 * 20 19 17 53 53 H 0.97006 * 120.00104 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 1.6740 -0.2034 -4.8136 10 6 0.1484 -0.2107 -4.9293 11 6 2.1873 1.2333 -4.9293 12 6 3.7129 1.2407 -4.8136 13 6 4.3136 0.3925 -5.9364 14 6 3.8003 -1.0442 -5.8206 15 6 2.2747 -1.0515 -5.9364 16 1 1.9815 -0.6375 -6.9011 17 6 1.7691 -2.4667 -5.8230 18 8 1.0037 -2.7676 -4.9316 19 7 2.1676 -3.3980 -6.7120 20 6 1.6765 -4.7737 -6.6014 21 6 2.2678 -5.6086 -7.7080 22 1 2.9415 -5.1593 -8.4225 23 6 1.9477 -6.9459 -7.8090 24 7 1.1260 -7.4928 -6.9398 25 14 2.6810 -7.9810 -9.1802 26 1 3.5685 -7.1352 -10.0182 27 1 3.4690 -9.0941 -8.5928 28 1 1.5889 -8.5365 -10.0192 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 2.6282 -1.5508 -3.4787 39 1 -0.2796 0.3935 -4.1295 40 1 -0.1448 0.2029 -5.8942 41 1 -0.2173 -1.2342 -4.8469 42 1 1.8937 1.6475 -5.8939 43 1 1.7593 1.8375 -4.1294 44 1 4.0061 0.8267 -3.8488 45 1 4.0785 2.2642 -4.8956 46 1 5.4004 0.3974 -5.8537 47 1 4.0204 0.8065 -6.9011 48 1 4.0935 -1.4582 -4.8560 49 1 4.2286 -1.6486 -6.6203 50 1 2.7796 -3.1573 -7.4251 51 1 1.9701 -5.1879 -5.6369 52 1 0.5896 -4.7793 -6.6835 53 1 0.9010 -8.4337 -7.0106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621297.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -160.203573 kcal Electronic energy + Delta-G solvation = -32359.247775 eV Core-core repulsion = 28229.338568 eV Total energy + Delta-G solvation = -4129.909207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33859 -41.12910 -39.25748 -37.58570 -36.19476 -35.28218 -34.70392 -34.19111 -32.25334 -31.95618 -29.25866 -28.33576 -28.28031 -27.52541 -25.18955 -24.16775 -23.90310 -22.09484 -21.46667 -20.95921 -20.14981 -19.22125 -18.89517 -17.65464 -17.29339 -17.09254 -17.03190 -16.45133 -16.19923 -15.87997 -15.63862 -15.52939 -15.29425 -14.86985 -14.84171 -14.49207 -14.38082 -14.09952 -13.68271 -13.59017 -13.53738 -13.29493 -13.14286 -13.04449 -12.91566 -12.84084 -12.82601 -12.77675 -12.67344 -12.52909 -12.40476 -12.21820 -12.16405 -12.12517 -11.62835 -11.47706 -11.44476 -11.31636 -11.19782 -10.80294 -10.67732 -10.42503 -9.92764 -9.75405 -8.28475 -6.44435 1.29795 1.43565 1.44055 1.57476 1.79096 1.91340 2.32078 2.57558 3.06918 3.19267 3.43861 3.74399 3.78287 3.79298 3.83395 3.97815 4.07454 4.16063 4.32463 4.39176 4.44040 4.47370 4.57529 4.63776 4.67971 4.72475 4.77332 4.78055 4.86525 4.89342 4.93912 4.98958 5.07710 5.10178 5.13045 5.17033 5.21588 5.27282 5.28858 5.31191 5.32573 5.38579 5.46085 5.49852 5.54831 5.59098 5.69163 5.74600 5.87498 6.53214 6.67637 6.94844 7.25265 7.46630 7.54194 8.83632 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.002988 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.154090 B = 9367.935479 C =10495.219211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.173 4.173 4 C -0.137 4.137 5 O -0.382 6.382 6 C 0.651 3.349 7 O -0.581 6.581 8 N -0.684 5.684 9 C 0.221 3.779 10 C -0.175 4.175 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.108 4.108 14 C -0.111 4.111 15 C -0.099 4.099 16 H 0.137 0.863 17 C 0.496 3.504 18 O -0.581 6.581 19 N -0.704 5.704 20 C 0.269 3.731 21 C -0.552 4.552 22 H 0.084 0.916 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.982 3.018 26 H -0.251 1.251 27 H -0.280 1.280 28 H -0.281 1.281 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.399 0.601 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.407 0.593 51 H -0.013 1.013 52 H -0.016 1.016 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.451 21.015 7.661 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.230 4.230 4 C -0.194 4.194 5 O -0.297 6.297 6 C 0.404 3.596 7 O -0.472 6.472 8 N -0.342 5.342 9 C 0.136 3.864 10 C -0.233 4.233 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.120 4.120 16 H 0.155 0.845 17 C 0.283 3.717 18 O -0.462 6.462 19 N -0.354 5.354 20 C 0.146 3.854 21 C -0.590 4.590 22 H 0.102 0.898 23 C -0.196 4.196 24 N -0.570 5.570 25 Si 0.805 3.195 26 H -0.175 1.175 27 H -0.206 1.206 28 H -0.207 1.207 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.243 0.757 51 H 0.005 0.995 52 H 0.002 0.998 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.479 21.114 8.378 23.622 hybrid contribution 0.010 -1.574 -0.529 1.661 sum 6.489 19.540 7.849 22.035 Atomic orbital electron populations 1.22464 0.94487 1.02218 1.04426 1.22384 0.94281 0.93072 0.81540 1.22416 1.01496 0.94556 1.04512 1.21889 1.02419 1.00865 0.94224 1.86326 1.71870 1.57178 1.14369 1.18119 0.78644 0.81575 0.81234 1.90782 1.41683 1.27681 1.87043 1.44843 1.54385 1.31927 1.03027 1.20019 0.93921 0.93285 0.79193 1.22425 0.95436 1.02789 1.02604 1.21977 0.96713 0.93674 1.03886 1.21483 0.94166 1.00769 0.98691 1.21520 1.00835 0.92615 0.99557 1.21596 0.90705 0.99668 1.02903 1.21715 0.98566 0.90154 1.01566 0.84514 1.21260 0.80758 0.88289 0.81381 1.90647 1.37284 1.82377 1.35887 1.46189 1.48026 1.10111 1.31038 1.18482 0.92859 0.78358 0.95688 1.21653 1.29172 0.94999 1.13143 0.89780 1.26038 0.95160 0.99385 0.99037 1.70147 1.35650 1.13463 1.37762 0.85156 0.78159 0.78135 0.78049 1.17462 1.20619 1.20676 0.91707 0.93392 0.88801 0.89085 0.91976 0.91421 0.92258 0.91133 0.87626 0.76607 0.91931 0.90661 0.92924 0.88915 0.90966 0.93693 0.90315 0.90140 0.89633 0.92680 0.89557 0.75738 0.99523 0.99769 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 8.37 71.98 0.60 -3.66 16 2 C 0.12 2.86 1.13 -10.79 -0.01 2.85 16 3 C -0.17 -3.46 8.37 71.98 0.60 -2.86 16 4 C -0.14 -2.37 8.85 71.98 0.64 -1.73 16 5 O -0.38 -11.50 9.94 -55.38 -0.55 -12.05 16 6 C 0.65 20.48 7.48 129.79 0.97 21.45 16 7 O -0.58 -18.74 8.09 19.80 0.16 -18.58 16 8 N -0.68 -20.66 3.14 -550.35 -1.73 -22.39 16 9 C 0.22 5.88 0.26 3.60 0.00 5.88 16 10 C -0.17 -5.46 8.08 71.98 0.58 -4.87 16 11 C -0.12 -2.61 4.52 30.59 0.14 -2.47 16 12 C -0.11 -1.97 5.77 30.59 0.18 -1.80 16 13 C -0.11 -1.57 5.92 30.60 0.18 -1.39 16 14 C -0.11 -2.20 4.93 30.59 0.15 -2.05 16 15 C -0.10 -2.46 1.82 -11.54 -0.02 -2.48 16 16 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 17 C 0.50 18.33 6.43 87.66 0.56 18.89 16 18 O -0.58 -26.78 12.68 -3.04 -0.04 -26.82 16 19 N -0.70 -27.93 5.44 -466.79 -2.54 -30.47 16 20 C 0.27 14.35 5.43 85.64 0.46 14.82 16 21 C -0.55 -29.29 9.28 25.60 0.24 -29.05 16 22 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 23 C 0.00 0.18 5.46 84.65 0.46 0.64 16 24 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 25 Si 0.98 41.80 29.54 68.60 2.03 43.82 16 26 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 29 H 0.06 1.88 5.88 -2.39 -0.01 1.86 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.68 5.88 -2.39 -0.01 1.66 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.40 12.68 6.75 -92.71 -0.63 12.05 16 39 H 0.06 2.08 6.17 -2.39 -0.01 2.07 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 2.06 5.51 -2.39 -0.01 2.05 16 42 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.07 1.82 6.16 -2.39 -0.01 1.81 16 44 H 0.04 0.93 7.60 -2.39 -0.02 0.91 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 1.24 6.86 -2.39 -0.02 1.23 16 49 H 0.09 1.56 7.57 -2.39 -0.02 1.54 16 50 H 0.41 13.21 7.74 -92.71 -0.72 12.49 16 51 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 52 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 53 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -72.05 399.68 2.92 -69.13 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.43 Total: 40.73 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.74 Total: 12.17 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.98 Total: -108.42 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.43 Total: -57.44 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.05 2.92 -69.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621297.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.071 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds