Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47028 * 2 1 4 4 C 1.53000 * 109.46612 * 240.00366 * 2 1 3 5 5 O 1.45199 * 109.47052 * 120.00399 * 2 1 3 6 6 C 1.34637 * 116.99925 * 59.99800 * 5 2 1 7 7 O 1.21508 * 120.00224 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00049 * 179.97438 * 6 5 2 9 9 C 1.46491 * 120.00072 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47507 * 34.99912 * 9 8 6 11 11 C 1.52996 * 109.47168 * 155.00356 * 9 8 6 12 12 C 1.53001 * 109.47241 * 294.99612 * 11 9 8 13 13 C 1.50701 * 109.47529 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99657 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99896 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99593 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00162 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47061 * 89.99837 * 17 15 13 19 19 H 1.48502 * 109.47039 * 209.99856 * 17 15 13 20 20 H 1.48497 * 109.47328 * 329.99685 * 17 15 13 21 21 C 1.50702 * 109.46957 * 274.99939 * 9 8 6 22 22 O 1.21283 * 120.00262 * 0.02562 * 21 9 8 23 23 N 1.34777 * 119.99928 * 179.72354 * 21 9 8 24 24 C 1.47067 * 136.05683 * 359.91428 * 23 21 9 25 25 C 1.53242 * 88.08123 * 207.19809 * 24 23 21 26 26 C 1.53004 * 114.32574 * 220.46689 * 25 24 23 27 27 C 1.53004 * 114.19881 * 87.72707 * 25 24 23 28 28 C 1.47072 * 136.05745 * 180.27198 * 23 21 9 29 29 H 1.09004 * 109.47060 * 299.99547 * 1 2 3 30 30 H 1.09000 * 109.47484 * 59.99509 * 1 2 3 31 31 H 1.09000 * 109.47242 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47088 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47388 * 300.00549 * 3 2 1 34 34 H 1.09004 * 109.46830 * 60.00312 * 3 2 1 35 35 H 1.08993 * 109.47393 * 299.99648 * 4 2 1 36 36 H 1.09003 * 109.47211 * 60.00403 * 4 2 1 37 37 H 1.09001 * 109.46458 * 180.02562 * 4 2 1 38 38 H 0.96997 * 119.99595 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.47201 * 54.99467 * 11 9 8 40 40 H 1.09003 * 109.47459 * 175.00018 * 11 9 8 41 41 H 1.08997 * 109.47176 * 300.00690 * 12 11 9 42 42 H 1.09011 * 109.46880 * 59.99882 * 12 11 9 43 43 H 0.96999 * 119.99644 * 179.97438 * 16 15 13 44 44 H 1.09000 * 113.46426 * 321.92357 * 24 23 21 45 45 H 1.08998 * 113.47159 * 92.37047 * 24 23 21 46 46 H 1.08998 * 109.46822 * 153.75854 * 26 25 24 47 47 H 1.08999 * 109.47112 * 273.75936 * 26 25 24 48 48 H 1.09001 * 109.46856 * 33.75694 * 26 25 24 49 49 H 1.08997 * 109.46779 * 326.30199 * 27 25 24 50 50 H 1.08994 * 109.46914 * 86.30167 * 27 25 24 51 51 H 1.09003 * 109.47095 * 206.30140 * 27 25 24 52 52 H 1.08991 * 113.47060 * 267.62729 * 28 23 21 53 53 H 1.08997 * 113.46223 * 38.07259 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0680 -2.6659 2.4165 9 6 1.6748 -4.0673 2.5823 10 1 1.6282 -4.5496 1.6060 11 6 2.7039 -4.7856 3.4574 12 6 4.0505 -4.8263 2.7322 13 6 5.0644 -5.5332 3.5944 14 1 4.7769 -5.9157 4.5627 15 6 6.3586 -5.6926 3.1467 16 7 7.2432 -6.3100 3.8989 17 14 6.8556 -5.0317 1.4717 18 1 7.3406 -3.6355 1.6146 19 1 7.9387 -5.8767 0.9076 20 1 5.6826 -5.0576 0.5614 21 6 0.3210 -4.1346 3.2410 22 8 -0.2585 -3.1125 3.5418 23 7 -0.2484 -5.3304 3.4903 24 6 0.1132 -6.7402 3.2787 25 6 -1.3840 -7.0624 3.2239 26 6 -1.7771 -8.3550 3.9420 27 6 -2.0029 -6.9324 1.8306 28 6 -1.5076 -5.7997 4.0879 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2072 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 2.6276 -2.2371 3.0827 39 1 2.8153 -4.2508 4.4007 40 1 2.3665 -5.8032 3.6543 41 1 3.9392 -5.3609 1.7889 42 1 4.3880 -3.8086 2.5353 43 1 8.1537 -6.4225 3.5838 44 1 0.6289 -6.9190 2.3352 45 1 0.6232 -7.1901 4.1305 46 1 -2.8160 -8.2893 4.2654 47 1 -1.6610 -9.1985 3.2615 48 1 -1.1345 -8.4978 4.8108 49 1 -1.5111 -6.1248 1.2886 50 1 -1.8722 -7.8677 1.2864 51 1 -3.0663 -6.7123 1.9246 52 1 -1.4337 -5.9966 5.1573 53 1 -2.3671 -5.1806 3.8311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819515544.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -116.130290 kcal Electronic energy + Delta-G solvation = -31778.381024 eV Core-core repulsion = 27650.382978 eV Total energy + Delta-G solvation = -4127.998046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.15405 -41.58646 -39.75830 -38.22780 -36.89389 -35.35794 -34.81874 -33.65127 -32.91307 -30.06984 -28.38532 -28.33851 -28.31387 -27.58878 -27.04279 -25.44251 -23.53266 -22.27174 -21.16136 -20.71419 -19.49901 -19.39000 -18.96245 -18.06708 -17.94379 -17.23712 -16.96986 -16.78154 -16.32201 -16.09727 -15.61036 -15.38089 -15.26206 -15.11953 -14.88935 -14.68826 -14.61069 -14.39181 -14.10605 -13.72918 -13.37551 -13.20475 -13.12136 -13.02150 -12.93835 -12.92036 -12.88613 -12.74438 -12.67107 -12.57913 -12.42760 -12.35291 -12.09338 -11.97714 -11.87686 -11.72767 -11.42736 -11.38818 -11.23511 -11.18026 -11.11449 -10.76069 -10.17552 -9.76940 -8.28566 -6.31633 1.01524 1.34799 1.37489 1.45771 1.47459 1.59671 1.94895 2.35034 3.07327 3.08791 3.15855 3.35950 3.72256 3.74297 3.78079 3.87877 3.92718 3.95366 3.99519 4.26380 4.38999 4.44261 4.51925 4.56291 4.57669 4.59182 4.65146 4.72486 4.73838 4.78371 4.81424 4.85371 4.86489 4.88597 4.92610 4.98974 5.08336 5.10421 5.13870 5.16085 5.26696 5.32651 5.32916 5.33908 5.44405 5.50966 5.51815 5.62606 6.26732 6.29202 6.60973 6.75885 6.98764 7.26518 7.33031 8.87575 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005800 B = 0.005432 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4826.781206 B = 5153.790837 C = 9108.373727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.121 3.879 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.656 3.344 7 O -0.590 6.590 8 N -0.685 5.685 9 C 0.161 3.839 10 H 0.109 0.891 11 C -0.091 4.091 12 C -0.004 4.004 13 C -0.524 4.524 14 H 0.043 0.957 15 C 0.015 3.985 16 N -0.946 5.946 17 Si 0.936 3.064 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.252 1.252 21 C 0.532 3.468 22 O -0.577 6.577 23 N -0.646 5.646 24 C 0.095 3.905 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.124 4.124 28 C 0.105 3.895 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.266 0.734 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.033 0.967 50 H 0.079 0.921 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 4.170 -6.756 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.410 3.590 7 O -0.481 6.481 8 N -0.343 5.343 9 C 0.053 3.947 10 H 0.127 0.873 11 C -0.129 4.129 12 C -0.042 4.042 13 C -0.562 4.562 14 H 0.061 0.939 15 C -0.183 4.183 16 N -0.586 5.586 17 Si 0.761 3.239 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.176 1.176 21 C 0.321 3.679 22 O -0.457 6.457 23 N -0.381 5.381 24 C -0.027 4.027 25 C -0.087 4.087 26 C -0.186 4.186 27 C -0.181 4.181 28 C -0.017 4.017 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.123 0.877 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.098 0.902 51 H 0.088 0.912 52 H 0.119 0.881 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.568 4.694 -7.103 20.427 hybrid contribution 0.982 0.416 -0.028 1.067 sum -17.586 5.110 -7.131 19.653 Atomic orbital electron populations 1.22436 0.94039 1.03376 1.03454 1.22505 0.94623 0.92956 0.81456 1.21888 1.02412 0.90359 1.04455 1.22480 1.01560 1.02223 0.97423 1.86314 1.71676 1.22730 1.47780 1.18083 0.78062 0.80934 0.81970 1.90837 1.41961 1.70922 1.44334 1.44350 1.54360 1.11713 1.23897 1.20826 0.91331 0.81079 1.01432 0.87324 1.21631 0.93334 1.00430 0.97511 1.19471 0.92503 0.96410 0.95804 1.21346 0.94750 1.36322 1.03756 0.93852 1.25800 0.96680 0.95049 1.00756 1.70036 1.04550 1.44547 1.39509 0.85865 0.78604 0.78654 0.80782 1.19592 1.20999 1.17603 1.20799 0.87101 0.81742 0.78241 1.90641 1.65134 1.34699 1.55234 1.49578 1.22864 1.05345 1.60288 1.23549 0.97923 0.77800 1.03414 1.22132 0.94305 0.95499 0.96721 1.21638 1.02526 0.94063 1.00335 1.21523 1.00710 1.02143 0.93742 1.23370 0.86118 0.93154 0.99073 0.92543 0.88436 0.92539 0.91287 0.87354 0.91349 0.92154 0.88433 0.92178 0.74801 0.91539 0.88872 0.96072 0.96371 0.92529 0.89946 0.87658 0.90796 0.90792 0.91381 0.94789 0.90174 0.91228 0.88136 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 2 C 0.12 3.10 1.13 -10.79 -0.01 3.09 16 3 C -0.13 -2.42 8.85 71.98 0.64 -1.78 16 4 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 5 O -0.37 -12.16 9.94 -55.47 -0.55 -12.71 16 6 C 0.66 24.16 7.89 129.79 1.02 25.19 16 7 O -0.59 -23.33 11.54 19.82 0.23 -23.10 16 8 N -0.69 -24.40 4.06 -573.75 -2.33 -26.73 16 9 C 0.16 5.59 2.25 44.25 0.10 5.69 16 10 H 0.11 3.86 7.58 -2.39 -0.02 3.84 16 11 C -0.09 -3.27 4.62 30.59 0.14 -3.13 16 12 C 0.00 -0.19 3.93 29.85 0.12 -0.08 16 13 C -0.52 -28.31 9.66 25.60 0.25 -28.06 16 14 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 15 C 0.01 0.83 5.47 84.65 0.46 1.29 16 16 N -0.95 -57.30 13.96 21.45 0.30 -57.00 16 17 Si 0.94 43.49 27.47 68.60 1.88 45.38 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 21 C 0.53 18.75 7.43 87.66 0.65 19.40 16 22 O -0.58 -24.28 17.10 -3.04 -0.05 -24.33 16 23 N -0.65 -17.83 3.45 -858.59 -2.96 -20.79 16 24 C 0.10 1.98 5.81 83.10 0.48 2.47 16 25 C -0.09 -1.40 1.53 -51.93 -0.08 -1.48 16 26 C -0.13 -1.38 9.30 71.98 0.67 -0.71 16 27 C -0.12 -2.08 9.22 71.98 0.66 -1.42 16 28 C 0.10 2.20 7.79 83.18 0.65 2.85 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.86 5.88 -2.39 -0.01 1.85 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.42 13.83 8.71 -92.71 -0.81 13.02 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.09 3.10 6.21 -2.39 -0.01 3.09 16 41 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 42 H 0.02 0.79 7.18 -2.38 -0.02 0.77 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 45 H 0.11 1.96 7.84 -2.39 -0.02 1.94 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.69 8.13 -2.39 -0.02 0.68 16 48 H 0.07 0.70 7.90 -2.39 -0.02 0.69 16 49 H 0.03 0.76 7.93 -2.39 -0.02 0.74 16 50 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 53 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 Total: -1.00 -75.02 420.52 3.50 -71.53 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.02 Total: 32.12 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.96 Total: 15.63 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.99 Total: -104.53 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -0.37 Total: -60.13 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -75.02 3.50 -71.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819515544.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.605 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds