Wall clock time and date at job start Sat Apr 11 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00169 * 2 1 4 4 C 1.50702 * 109.46897 * 89.99718 * 3 2 1 5 5 H 1.08003 * 119.99930 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99979 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99839 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00018 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46962 * 90.00320 * 8 6 4 10 10 H 1.48497 * 109.47133 * 210.00368 * 8 6 4 11 11 H 1.48499 * 109.47166 * 330.00410 * 8 6 4 12 12 C 1.34780 * 119.99975 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00135 * 184.10687 * 12 2 1 14 14 C 1.50703 * 119.99888 * 4.10730 * 12 2 1 15 15 H 1.09003 * 109.87534 * 26.79875 * 14 12 2 16 16 N 1.47020 * 109.88047 * 147.97440 * 14 12 2 17 17 C 1.34774 * 125.64949 * 300.42909 * 16 14 12 18 18 O 1.21516 * 120.00278 * 0.02562 * 17 16 14 19 19 O 1.34643 * 120.00398 * 180.02562 * 17 16 14 20 20 C 1.45191 * 117.00079 * 180.02562 * 19 17 16 21 21 C 1.53004 * 109.47821 * 60.00043 * 20 19 17 22 22 C 1.53000 * 109.47103 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47025 * 299.99466 * 20 19 17 24 24 C 1.47426 * 108.70548 * 120.47652 * 16 14 12 25 25 C 1.54908 * 104.82881 * 335.87196 * 24 16 14 26 26 C 1.54318 * 109.88148 * 265.78193 * 14 12 2 27 27 C 1.52999 * 110.72528 * 21.13913 * 26 14 12 28 28 C 1.53006 * 110.72041 * 144.23708 * 26 14 12 29 29 H 1.09002 * 109.47185 * 264.05389 * 1 2 3 30 30 H 1.08999 * 109.46590 * 144.05808 * 1 2 3 31 31 H 1.08993 * 109.46773 * 24.06015 * 1 2 3 32 32 H 1.08989 * 109.47192 * 209.99859 * 3 2 1 33 33 H 1.09004 * 109.46909 * 330.00452 * 3 2 1 34 34 H 0.97000 * 120.00094 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46863 * 59.99586 * 21 20 19 36 36 H 1.08997 * 109.46997 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46289 * 300.00265 * 21 20 19 38 38 H 1.09000 * 109.47015 * 59.99811 * 22 20 19 39 39 H 1.09001 * 109.47527 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.46952 * 300.00029 * 22 20 19 41 41 H 1.09004 * 109.46987 * 60.00591 * 23 20 19 42 42 H 1.08997 * 109.47314 * 180.02562 * 23 20 19 43 43 H 1.09000 * 109.47512 * 300.00444 * 23 20 19 44 44 H 1.08998 * 110.36766 * 217.03371 * 24 16 14 45 45 H 1.09001 * 110.36786 * 94.70834 * 24 16 14 46 46 H 1.09006 * 111.00569 * 278.93160 * 25 24 16 47 47 H 1.09000 * 111.03687 * 155.09777 * 25 24 16 48 48 H 1.09002 * 109.46746 * 62.19811 * 27 26 14 49 49 H 1.08999 * 109.47843 * 182.19583 * 27 26 14 50 50 H 1.09006 * 109.47130 * 302.19997 * 27 26 14 51 51 H 1.09000 * 109.46650 * 59.99943 * 28 26 14 52 52 H 1.08996 * 109.47042 * 179.97438 * 28 26 14 53 53 H 1.09002 * 109.46671 * 300.00059 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0980 1.0957 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.5525 3.6185 0.6733 8 14 3.4379 3.4168 3.4340 9 1 4.7334 2.8602 3.8999 10 1 3.4849 4.8997 3.4970 11 1 2.3432 2.9189 4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3494 -1.1686 0.0747 14 6 1.3883 -2.4706 -0.0946 15 1 0.4410 -2.3162 -0.6113 16 7 2.1985 -3.4633 -0.8154 17 6 2.6523 -3.3392 -2.0783 18 8 2.3977 -2.3392 -2.7200 19 8 3.3878 -4.3233 -2.6292 20 6 3.8433 -4.1214 -3.9930 21 6 4.7188 -2.8682 -4.0582 22 6 4.6565 -5.3362 -4.4443 23 6 2.6340 -3.9472 -4.9140 24 6 2.4315 -4.6175 0.0718 25 6 2.2828 -4.0515 1.5061 26 6 1.1294 -3.0304 1.3200 27 6 1.2171 -1.9181 2.3669 28 6 -0.2312 -3.7271 1.3859 29 1 -0.3634 -0.1065 1.0221 30 1 -0.3632 -0.8320 -0.6032 31 1 -0.3632 0.9383 -0.4190 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0284 -0.5138 34 1 4.0287 4.4448 0.8505 35 1 5.5803 -2.9924 -3.4020 36 1 5.0603 -2.7165 -5.0821 37 1 4.1390 -2.0030 -3.7368 38 1 4.0325 -6.2287 -4.3980 39 1 4.9981 -5.1849 -5.4682 40 1 5.5180 -5.4608 -3.7881 41 1 2.0543 -3.0819 -4.5927 42 1 2.9759 -3.7960 -5.9379 43 1 2.0104 -4.8399 -4.8677 44 1 3.4359 -5.0139 -0.0773 45 1 1.6863 -5.3920 -0.1096 46 1 3.1978 -3.5532 1.8264 47 1 2.0009 -4.8356 2.2088 48 1 0.4453 -1.1736 2.1714 49 1 1.0700 -2.3417 3.3604 50 1 2.1984 -1.4465 2.3146 51 1 -0.2527 -4.5505 0.6720 52 1 -0.3927 -4.1144 2.3918 53 1 -1.0173 -3.0128 1.1406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823446190.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:30 Heat of formation + Delta-G solvation = -130.915247 kcal Electronic energy + Delta-G solvation = -33186.291580 eV Core-core repulsion = 29057.652410 eV Total energy + Delta-G solvation = -4128.639170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.35386 -41.19468 -39.13652 -37.82085 -36.63082 -35.44256 -34.74800 -34.31886 -31.36080 -29.78100 -28.42734 -28.38835 -28.30250 -28.22892 -27.21098 -25.00878 -24.38026 -22.78689 -21.37734 -20.35073 -19.44776 -18.86008 -18.70696 -18.30810 -17.67195 -17.19994 -16.96528 -16.60809 -16.42935 -15.85781 -15.69279 -15.34697 -15.04557 -14.77109 -14.58052 -14.44951 -14.22935 -14.00777 -13.72296 -13.62078 -13.50500 -13.36768 -13.21438 -13.16656 -12.98186 -12.92804 -12.88276 -12.87529 -12.77988 -12.58530 -12.56407 -12.43634 -12.28468 -12.17219 -12.02944 -11.82458 -11.64639 -11.44585 -11.41382 -11.14798 -10.77147 -10.66616 -9.75007 -9.42873 -8.22523 -6.37649 0.90430 1.34274 1.38124 1.47910 1.70361 1.83427 2.28854 2.44426 2.90185 3.06606 3.29482 3.46951 3.61101 3.71861 3.76061 3.81534 3.91094 4.07956 4.22577 4.26317 4.36169 4.44851 4.53239 4.55970 4.58180 4.64344 4.66933 4.71598 4.76336 4.79531 4.82817 4.85310 4.89970 4.95499 4.99065 5.03932 5.09296 5.11698 5.15857 5.20083 5.22356 5.24246 5.32985 5.38759 5.42006 5.50891 5.57489 5.81883 6.04342 6.33669 6.68580 6.76404 7.21247 7.27929 7.47698 8.85276 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012089 B = 0.004025 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.594970 B = 6955.673837 C = 8217.789027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.266 3.734 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.255 1.255 12 C 0.507 3.493 13 O -0.593 6.593 14 C 0.146 3.854 15 H 0.107 0.893 16 N -0.591 5.591 17 C 0.662 3.338 18 O -0.594 6.594 19 O -0.360 6.360 20 C 0.124 3.876 21 C -0.181 4.181 22 C -0.130 4.130 23 C -0.175 4.175 24 C 0.104 3.896 25 C -0.119 4.119 26 C -0.053 4.053 27 C -0.147 4.147 28 C -0.129 4.129 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.071 0.929 32 H -0.018 1.018 33 H 0.018 0.982 34 H 0.266 0.734 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.049 0.951 47 H 0.133 0.867 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.020 0.980 51 H 0.074 0.926 52 H 0.091 0.909 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -23.715 -3.245 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.337 5.337 3 C 0.145 3.855 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.209 1.209 10 H -0.201 1.201 11 H -0.179 1.179 12 C 0.295 3.705 13 O -0.473 6.473 14 C 0.040 3.960 15 H 0.125 0.875 16 N -0.331 5.331 17 C 0.417 3.583 18 O -0.484 6.484 19 O -0.275 6.275 20 C 0.088 3.912 21 C -0.239 4.239 22 C -0.186 4.186 23 C -0.232 4.232 24 C -0.016 4.016 25 C -0.157 4.157 26 C -0.054 4.054 27 C -0.204 4.204 28 C -0.186 4.186 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.000 1.000 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.068 0.932 47 H 0.151 0.849 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.039 0.961 51 H 0.093 0.907 52 H 0.110 0.890 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.965 -23.262 -3.629 24.854 hybrid contribution 0.962 1.603 0.334 1.899 sum -7.003 -21.659 -3.295 23.000 Atomic orbital electron populations 1.22053 0.78328 1.03502 1.02769 1.48072 1.08100 1.06228 1.71287 1.18688 0.90336 0.80149 0.96336 1.21665 1.36479 1.06294 0.92629 0.92088 1.25940 0.94959 0.96474 1.02155 1.70086 1.39172 1.14846 1.33290 0.85383 0.78742 0.77482 0.79030 1.20854 1.20071 1.17865 1.21136 0.87774 0.86283 0.75314 1.90614 1.16820 1.87769 1.52135 1.21950 0.92909 0.85203 0.95941 0.87510 1.47003 1.54698 1.21294 1.10132 1.17711 0.77515 0.81308 0.81734 1.90921 1.62962 1.32054 1.62495 1.86273 1.64686 1.43610 1.32893 1.22465 0.94838 0.97546 0.76370 1.22473 0.99523 0.98157 1.03723 1.21857 0.99327 0.94782 1.02683 1.22438 0.97541 1.03052 1.00218 1.22640 1.03110 0.87500 0.88396 1.22985 0.97356 0.98923 0.96424 1.21641 0.99087 0.95993 0.88725 1.22006 1.01101 0.97701 0.99611 1.21851 0.91749 1.00546 1.04463 0.90661 0.89793 0.91003 1.00019 0.96397 0.92541 0.93116 0.88575 0.93748 0.90095 0.87733 0.91656 0.92770 0.88930 0.90778 0.90545 0.87172 0.93183 0.84875 0.91610 0.88912 0.96105 0.90729 0.89023 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.51 9.67 127.77 1.24 3.75 16 2 N -0.61 -28.34 2.68 -851.13 -2.28 -30.62 16 3 C 0.27 15.63 5.17 85.63 0.44 16.07 16 4 C -0.53 -31.81 9.39 25.60 0.24 -31.57 16 5 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 6 C 0.00 0.18 5.46 84.66 0.46 0.64 16 7 N -0.93 -59.28 13.29 21.45 0.28 -59.00 16 8 Si 0.97 46.13 29.54 68.60 2.03 48.16 16 9 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.25 -11.25 7.11 99.48 0.71 -10.55 16 12 C 0.51 23.47 3.75 87.66 0.33 23.80 16 13 O -0.59 -34.15 16.09 -3.04 -0.05 -34.20 16 14 C 0.15 4.79 2.25 44.59 0.10 4.89 16 15 H 0.11 3.15 5.60 -2.39 -0.01 3.14 16 16 N -0.59 -19.31 2.81 -922.37 -2.59 -21.90 16 17 C 0.66 24.76 7.59 129.79 0.99 25.74 16 18 O -0.59 -26.31 11.62 19.79 0.23 -26.08 16 19 O -0.36 -11.29 9.42 -55.53 -0.52 -11.81 16 20 C 0.12 3.23 1.13 -10.79 -0.01 3.21 16 21 C -0.18 -5.57 8.37 71.98 0.60 -4.97 16 22 C -0.13 -2.16 8.85 71.98 0.64 -1.52 16 23 C -0.18 -4.17 8.37 71.98 0.60 -3.57 16 24 C 0.10 2.35 6.61 86.85 0.57 2.92 16 25 C -0.12 -2.57 6.03 31.99 0.19 -2.38 16 26 C -0.05 -1.26 0.85 -50.99 -0.04 -1.30 16 27 C -0.15 -4.21 7.52 71.98 0.54 -3.66 16 28 C -0.13 -1.75 8.45 71.98 0.61 -1.14 16 29 H 0.08 2.17 6.13 -2.39 -0.01 2.15 16 30 H 0.08 2.26 5.94 -2.39 -0.01 2.24 16 31 H 0.07 2.37 7.83 -2.39 -0.02 2.36 16 32 H -0.02 -1.27 7.48 -2.39 -0.02 -1.29 16 33 H 0.02 1.08 7.86 -2.39 -0.02 1.06 16 34 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.79 5.88 -2.39 -0.01 1.78 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.70 5.88 -2.39 -0.01 1.69 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 45 H 0.11 1.64 7.71 -2.39 -0.02 1.62 16 46 H 0.05 1.45 8.04 -2.38 -0.02 1.43 16 47 H 0.13 1.65 8.04 -2.39 -0.02 1.64 16 48 H 0.07 1.89 5.36 -2.39 -0.01 1.88 16 49 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.02 0.81 6.80 -2.38 -0.02 0.79 16 51 H 0.07 0.83 7.43 -2.39 -0.02 0.81 16 52 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -89.49 407.78 5.48 -84.02 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.88 Total: 20.52 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 7.50 Total: 30.92 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.59 Total: -111.52 kcal Atomic # 8 Polarization: -71.75 SS G_CDS: -0.34 Total: -72.09 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -89.49 5.48 -84.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823446190.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.897 kcal (2) G-P(sol) polarization free energy of solvation -89.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds