Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 C 1.53000 * 109.46751 * 239.99952 * 2 1 3 5 5 O 1.45204 * 109.47328 * 120.00459 * 2 1 3 6 6 C 1.34640 * 116.99866 * 59.99290 * 5 2 1 7 7 O 1.21511 * 119.99725 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99913 * 180.02562 * 6 5 2 9 9 C 1.47430 * 125.64440 * 359.95315 * 8 6 5 10 10 C 1.54916 * 104.82659 * 155.91736 * 9 8 6 11 11 C 1.55149 * 101.58563 * 37.00578 * 10 9 8 12 12 C 1.52998 * 110.72050 * 206.13548 * 11 10 9 13 13 C 1.53003 * 110.72077 * 82.86022 * 11 10 9 14 14 C 1.47019 * 125.65042 * 180.02562 * 8 6 5 15 15 H 1.08999 * 110.01181 * 61.52523 * 14 8 6 16 16 C 1.50700 * 109.88091 * 300.43176 * 14 8 6 17 17 O 1.21283 * 120.00275 * 342.18985 * 16 14 8 18 18 N 1.34777 * 120.00075 * 162.18886 * 16 14 8 19 19 C 1.46499 * 120.00065 * 180.02562 * 18 16 14 20 20 C 1.53004 * 109.47198 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.47211 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99761 * 359.97438 * 21 20 19 23 23 C 1.37871 * 119.99694 * 180.27574 * 21 20 19 24 24 N 1.31514 * 120.00482 * 359.71466 * 23 21 20 25 25 Si 1.86801 * 119.99746 * 179.72062 * 23 21 20 26 26 H 1.48504 * 109.47209 * 89.99886 * 25 23 21 27 27 H 1.48501 * 109.47358 * 209.99377 * 25 23 21 28 28 H 1.48496 * 109.47341 * 329.99989 * 25 23 21 29 29 H 1.09005 * 109.46564 * 299.99714 * 1 2 3 30 30 H 1.09001 * 109.47150 * 59.99584 * 1 2 3 31 31 H 1.08998 * 109.47581 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47593 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47272 * 300.00341 * 3 2 1 34 34 H 1.08997 * 109.47166 * 60.00214 * 3 2 1 35 35 H 1.08998 * 109.47534 * 300.00664 * 4 2 1 36 36 H 1.09001 * 109.46915 * 60.00320 * 4 2 1 37 37 H 1.09002 * 109.47194 * 179.97438 * 4 2 1 38 38 H 1.08990 * 110.37077 * 37.07663 * 9 8 6 39 39 H 1.09005 * 110.45640 * 274.79564 * 9 8 6 40 40 H 1.08996 * 111.00259 * 278.92506 * 10 9 8 41 41 H 1.09003 * 111.03294 * 155.09910 * 10 9 8 42 42 H 1.09001 * 109.47175 * 173.52644 * 12 11 10 43 43 H 1.09002 * 109.47408 * 293.52315 * 12 11 10 44 44 H 1.08998 * 109.47387 * 53.52294 * 12 11 10 45 45 H 1.08992 * 109.46953 * 306.48187 * 13 11 10 46 46 H 1.09002 * 109.46994 * 66.47832 * 13 11 10 47 47 H 1.08998 * 109.46889 * 186.47402 * 13 11 10 48 48 H 0.97000 * 120.00140 * 0.02562 * 18 16 14 49 49 H 1.09000 * 109.47602 * 60.00059 * 19 18 16 50 50 H 1.09007 * 109.47337 * 299.99774 * 19 18 16 51 51 H 1.09000 * 109.47211 * 59.99311 * 20 19 18 52 52 H 1.09007 * 109.46376 * 299.99853 * 20 19 18 53 53 H 0.96995 * 120.00207 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5096 0.5035 8 7 2.0672 -2.6656 2.4170 9 6 2.9173 -2.1403 3.5009 10 6 2.5998 -3.0368 4.7237 11 6 2.4149 -4.4238 4.0535 12 6 1.4980 -5.3137 4.8950 13 6 3.7684 -5.1000 3.8262 14 6 1.7483 -4.0712 2.7070 15 1 2.1418 -4.7132 1.9190 16 6 0.2553 -4.2466 2.8130 17 8 -0.4580 -3.2812 2.9863 18 7 -0.2873 -5.4765 2.7153 19 6 -1.7387 -5.6470 2.8178 20 6 -2.0894 -7.1294 2.6750 21 6 -3.5825 -7.3048 2.7798 22 1 -4.2177 -6.4449 2.9334 23 6 -4.1370 -8.5636 2.6859 24 7 -3.3635 -9.6107 2.4993 25 14 -5.9871 -8.7818 2.8236 26 1 -6.5991 -8.6826 1.4742 27 1 -6.2864 -10.1147 3.4060 28 1 -6.5468 -7.7217 3.7000 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2496 38 1 2.6615 -1.1026 3.7146 39 1 3.9707 -2.2232 3.2330 40 1 1.6821 -2.7153 5.2160 41 1 3.4333 -3.0502 5.4260 42 1 1.2896 -6.2362 4.3530 43 1 1.9880 -5.5502 5.8395 44 1 0.5632 -4.7890 5.0921 45 1 4.4234 -4.4255 3.2749 46 1 4.2208 -5.3400 4.7884 47 1 3.6251 -6.0163 3.2535 48 1 0.2832 -6.2487 2.5770 49 1 -2.2281 -5.0797 2.0261 50 1 -2.0795 -5.2852 3.7879 51 1 -1.6001 -7.6965 3.4669 52 1 -1.7486 -7.4915 1.7050 53 1 -3.7536 -10.4963 2.4336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832022522.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -148.089356 kcal Electronic energy + Delta-G solvation = -32019.366770 eV Core-core repulsion = 27889.982875 eV Total energy + Delta-G solvation = -4129.383895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.35850 -41.18907 -39.23594 -37.83201 -36.63159 -35.48225 -34.88288 -34.28048 -32.02997 -30.67262 -28.54572 -28.41586 -28.31107 -28.23595 -26.59089 -24.39194 -23.45814 -22.66110 -22.00416 -20.42676 -20.24992 -18.88268 -18.67990 -18.27839 -17.61496 -17.09138 -16.88879 -16.69495 -16.46182 -16.01353 -15.90879 -15.38720 -15.12246 -15.04797 -14.81066 -14.44086 -14.35632 -14.23743 -14.03058 -13.71008 -13.36209 -13.26122 -13.17115 -13.02149 -12.97298 -12.94630 -12.90468 -12.88310 -12.60791 -12.55390 -12.48412 -12.31441 -12.27305 -12.10052 -11.83719 -11.67835 -11.52822 -11.47959 -11.42230 -11.14002 -10.93207 -10.62562 -10.02486 -9.84626 -8.26259 -6.36870 0.90339 1.39050 1.39888 1.51280 1.60259 1.71066 2.23450 2.42717 2.87660 3.08047 3.25787 3.43058 3.61919 3.72544 3.76483 3.86753 3.91468 4.14312 4.20642 4.22649 4.42922 4.44073 4.46918 4.55071 4.56671 4.61149 4.66984 4.71950 4.79120 4.79463 4.79971 4.85375 4.86361 4.91871 5.00858 5.07229 5.10207 5.16294 5.18244 5.23862 5.24949 5.32091 5.32936 5.42137 5.45866 5.47362 5.54962 5.75649 6.13847 6.32044 6.57763 6.75250 7.19805 7.27022 7.32178 8.85572 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003021 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.697381 B = 9266.718298 C =10944.753551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.130 4.130 4 C -0.177 4.177 5 O -0.361 6.361 6 C 0.665 3.335 7 O -0.592 6.592 8 N -0.590 5.590 9 C 0.102 3.898 10 C -0.118 4.118 11 C -0.054 4.054 12 C -0.145 4.145 13 C -0.133 4.133 14 C 0.144 3.856 15 H 0.105 0.895 16 C 0.508 3.492 17 O -0.581 6.581 18 N -0.714 5.714 19 C 0.147 3.853 20 C 0.028 3.972 21 C -0.549 4.549 22 H 0.054 0.946 23 C 0.010 3.990 24 N -0.924 5.924 25 Si 0.964 3.036 26 H -0.274 1.274 27 H -0.276 1.276 28 H -0.267 1.267 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.131 0.869 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.408 0.592 49 H 0.031 0.969 50 H 0.046 0.954 51 H 0.015 0.985 52 H 0.004 0.996 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.001 17.548 1.331 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.187 4.187 4 C -0.234 4.234 5 O -0.276 6.276 6 C 0.420 3.580 7 O -0.483 6.483 8 N -0.330 5.330 9 C -0.018 4.018 10 C -0.155 4.155 11 C -0.055 4.055 12 C -0.202 4.202 13 C -0.189 4.189 14 C 0.038 3.962 15 H 0.123 0.877 16 C 0.294 3.706 17 O -0.460 6.460 18 N -0.366 5.366 19 C 0.023 3.977 20 C -0.010 4.010 21 C -0.587 4.587 22 H 0.072 0.928 23 C -0.189 4.189 24 N -0.563 5.563 25 Si 0.788 3.212 26 H -0.199 1.199 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.084 0.916 48 H 0.245 0.755 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.034 0.966 52 H 0.023 0.977 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.245 18.024 1.045 27.880 hybrid contribution -1.562 -0.831 -0.383 1.810 sum 19.683 17.193 0.661 26.143 Atomic orbital electron populations 1.22461 0.95217 1.02887 1.03188 1.22446 0.93729 0.93262 0.81716 1.21857 1.02768 0.89817 1.04288 1.22449 1.01963 1.01834 0.97169 1.86273 1.71445 1.22327 1.47519 1.17665 0.77995 0.80925 0.81387 1.90920 1.41662 1.71130 1.44549 1.46894 1.52837 1.11431 1.21809 1.22644 0.95155 0.98911 0.85127 1.22996 1.03824 0.91950 0.96779 1.21647 0.97227 0.96976 0.89678 1.21997 0.98015 0.99049 1.01172 1.21860 0.92557 1.00461 1.04071 1.21835 0.90282 0.82607 1.01527 0.87685 1.21271 0.91667 0.82616 0.75048 1.90636 1.64067 1.40573 1.50754 1.46159 1.08568 1.08878 1.72958 1.21131 0.79230 0.98292 0.99037 1.19094 0.96015 0.89605 0.96267 1.21435 0.93189 0.93430 1.50692 0.92753 1.25842 1.03272 0.95486 0.94342 1.70046 1.37124 0.99220 1.49944 0.85464 0.79309 0.77783 0.78612 1.19925 1.20077 1.19168 0.92768 0.88816 0.93410 0.90320 0.87857 0.91437 0.92761 0.89027 0.91028 0.90237 0.87782 0.92234 0.85082 0.91944 0.88682 0.95055 0.91012 0.89064 0.91646 0.75538 0.95102 0.93572 0.96635 0.97728 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 8.37 71.98 0.60 -4.26 16 2 C 0.12 2.90 1.13 -10.80 -0.01 2.89 16 3 C -0.13 -1.88 8.85 71.98 0.64 -1.24 16 4 C -0.18 -3.89 8.37 71.98 0.60 -3.29 16 5 O -0.36 -10.12 9.42 -55.50 -0.52 -10.64 16 6 C 0.66 22.18 7.26 129.79 0.94 23.12 16 7 O -0.59 -23.94 11.49 20.54 0.24 -23.70 16 8 N -0.59 -16.44 2.79 -922.37 -2.57 -19.01 16 9 C 0.10 1.85 6.60 86.86 0.57 2.42 16 10 C -0.12 -1.86 6.02 31.99 0.19 -1.67 16 11 C -0.05 -0.99 0.85 -51.00 -0.04 -1.03 16 12 C -0.14 -3.09 7.32 71.98 0.53 -2.56 16 13 C -0.13 -1.48 8.44 71.98 0.61 -0.87 16 14 C 0.14 3.95 2.82 44.60 0.13 4.08 16 15 H 0.11 2.70 7.84 -2.39 -0.02 2.68 16 16 C 0.51 19.16 4.54 87.66 0.40 19.56 16 17 O -0.58 -27.13 15.93 -3.04 -0.05 -27.17 16 18 N -0.71 -27.21 4.43 -463.04 -2.05 -29.26 16 19 C 0.15 6.86 5.61 86.38 0.48 7.35 16 20 C 0.03 1.45 5.09 29.85 0.15 1.60 16 21 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 22 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 23 C 0.01 0.55 5.46 84.65 0.46 1.01 16 24 N -0.92 -54.89 13.29 21.45 0.28 -54.61 16 25 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.73 5.88 -2.39 -0.01 1.71 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.60 5.88 -2.39 -0.01 1.59 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 39 H 0.10 1.24 7.70 -2.38 -0.02 1.23 16 40 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 41 H 0.13 1.04 8.04 -2.39 -0.02 1.02 16 42 H 0.06 1.40 6.69 -2.39 -0.02 1.38 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.03 0.88 6.98 -2.39 -0.02 0.86 16 45 H 0.07 0.68 7.41 -2.39 -0.02 0.66 16 46 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.41 13.34 7.57 -92.71 -0.70 12.64 16 49 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 51 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 53 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -80.40 414.14 4.02 -76.39 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.18 Total: 25.79 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.48 Total: 15.52 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.34 Total: -102.88 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -0.34 Total: -61.52 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -80.40 4.02 -76.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022522.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.702 kcal (2) G-P(sol) polarization free energy of solvation -80.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds