Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46955 * 2 1 4 4 C 1.53001 * 109.46984 * 240.00263 * 2 1 3 5 5 O 1.45193 * 109.47179 * 120.00476 * 2 1 3 6 6 C 1.34633 * 117.00361 * 58.99539 * 5 2 1 7 7 O 1.21510 * 120.00024 * 5.23115 * 6 5 2 8 8 N 1.34779 * 120.00221 * 185.22731 * 6 5 2 9 9 C 1.47975 * 126.93995 * 184.95595 * 8 6 5 10 10 H 1.08993 * 110.75390 * 82.76901 * 9 8 6 11 11 C 1.52999 * 110.75204 * 319.58643 * 9 8 6 12 12 N 1.46502 * 109.47002 * 177.90022 * 11 9 8 13 13 C 1.36932 * 119.99862 * 94.95108 * 12 11 9 14 14 H 1.08004 * 119.99739 * 218.67190 * 13 12 11 15 15 C 1.38811 * 120.00292 * 38.67421 * 13 12 11 16 16 N 1.31618 * 120.00128 * 198.81784 * 15 13 12 17 17 Si 1.86798 * 119.99817 * 19.09571 * 15 13 12 18 18 H 1.48500 * 109.47311 * 265.12210 * 17 15 13 19 19 H 1.48504 * 109.47140 * 25.12252 * 17 15 13 20 20 H 1.48500 * 109.47251 * 145.12118 * 17 15 13 21 21 C 1.46500 * 120.00038 * 274.95339 * 12 11 9 22 22 C 1.53004 * 117.49899 * 183.85152 * 21 12 11 23 23 C 1.52994 * 117.49992 * 115.22691 * 21 12 11 24 24 C 1.54929 * 102.75215 * 201.27045 * 9 8 6 25 25 O 1.44636 * 102.34472 * 323.88001 * 24 9 8 26 26 C 1.43729 * 105.58187 * 37.53871 * 25 24 9 27 27 C 1.52997 * 109.71628 * 215.12900 * 26 25 24 28 28 C 1.53004 * 109.71555 * 94.57806 * 26 25 24 29 29 H 1.09001 * 109.47117 * 301.44548 * 1 2 3 30 30 H 1.08997 * 109.47722 * 61.45064 * 1 2 3 31 31 H 1.09004 * 109.46974 * 181.45410 * 1 2 3 32 32 H 1.09003 * 109.47176 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47476 * 300.00233 * 3 2 1 34 34 H 1.09005 * 109.46891 * 60.00800 * 3 2 1 35 35 H 1.09002 * 109.47552 * 306.75563 * 4 2 1 36 36 H 1.09010 * 109.47059 * 66.74661 * 4 2 1 37 37 H 1.08997 * 109.47247 * 186.75019 * 4 2 1 38 38 H 1.09003 * 109.47606 * 57.90293 * 11 9 8 39 39 H 1.09003 * 109.47429 * 297.89680 * 11 9 8 40 40 H 0.96998 * 120.00261 * 180.27015 * 16 15 13 41 41 H 1.09001 * 115.54911 * 329.55416 * 21 12 11 42 42 H 1.09004 * 117.49659 * 359.97438 * 22 21 12 43 43 H 1.09001 * 117.49864 * 145.01885 * 22 21 12 44 44 H 1.09004 * 117.50059 * 214.97766 * 23 21 12 45 45 H 1.08999 * 117.50336 * 359.97438 * 23 21 12 46 46 H 1.09006 * 110.82822 * 82.09690 * 24 9 8 47 47 H 1.09001 * 110.82707 * 205.66359 * 24 9 8 48 48 H 1.09003 * 109.46853 * 178.84335 * 27 26 25 49 49 H 1.09001 * 109.47358 * 298.84910 * 27 26 25 50 50 H 1.09004 * 109.46832 * 58.84702 * 27 26 25 51 51 H 1.09001 * 109.46954 * 301.15491 * 28 26 25 52 52 H 1.09001 * 109.46824 * 61.15427 * 28 26 25 53 53 H 1.09002 * 109.46950 * 181.15608 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6352 -1.9661 1.3487 7 8 0.9995 -2.5274 0.4785 8 7 1.9612 -2.6266 2.4775 9 6 1.7159 -4.0555 2.7741 10 1 2.4958 -4.6798 2.3382 11 6 0.3363 -4.4846 2.2708 12 7 0.1432 -5.9129 2.5334 13 6 -0.5050 -6.3186 3.6693 14 1 -0.1623 -7.1923 4.2038 15 6 -1.6027 -5.6071 4.1338 16 7 -1.9977 -5.7470 5.3815 17 14 -2.5240 -4.4569 2.9858 18 1 -2.0037 -3.0754 3.1469 19 1 -2.3292 -4.8986 1.5814 20 1 -3.9715 -4.4824 3.3165 21 6 0.6437 -6.9071 1.5809 22 6 0.3323 -8.3778 1.8657 23 6 1.7540 -7.8456 2.0574 24 6 1.7736 -4.0983 4.3217 25 8 2.8076 -3.1318 4.6194 26 6 2.6322 -2.0721 3.6644 27 6 3.9962 -1.5037 3.2678 28 6 1.7704 -0.9648 4.2744 29 1 -0.3633 0.5361 0.8767 30 1 -0.3634 0.4911 -0.9026 31 1 -0.3633 -1.0274 0.0261 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9562 0.8901 35 1 1.5813 -1.7080 -1.3119 36 1 1.7785 -0.1423 -2.1352 37 1 3.1232 -0.8270 -1.1910 38 1 0.2668 -4.2997 1.1988 39 1 -0.4336 -3.9126 2.7888 40 1 -2.7671 -5.2527 5.7050 41 1 0.6658 -6.5898 0.5383 42 1 -0.2445 -8.6056 2.7621 43 1 0.1494 -9.0283 1.0105 44 1 2.5064 -8.1462 1.3282 45 1 2.1125 -7.7232 3.0794 46 1 0.8208 -3.7922 4.7537 47 1 2.0581 -5.0906 4.6716 48 1 3.8598 -0.7146 2.5283 49 1 4.4895 -1.0943 4.1493 50 1 4.6110 -2.2974 2.8431 51 1 0.8034 -1.3755 4.5650 52 1 2.2708 -0.5572 5.1527 53 1 1.6229 -0.1730 3.5399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862232539.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -71.224934 kcal Electronic energy + Delta-G solvation = -33714.019299 eV Core-core repulsion = 29587.968496 eV Total energy + Delta-G solvation = -4126.050804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.31696 -40.86177 -38.98384 -37.99875 -35.78381 -35.64291 -34.57924 -34.06143 -32.68159 -29.73569 -28.48202 -28.32725 -28.26957 -27.29259 -25.56613 -25.02549 -22.97193 -22.47478 -22.16125 -21.54432 -20.39311 -18.90476 -18.40776 -18.18300 -17.32584 -17.26753 -17.04922 -16.77646 -16.22974 -16.02948 -15.76513 -15.40272 -15.30414 -15.04395 -14.64436 -14.57967 -14.41893 -14.18773 -13.98519 -13.87708 -13.54707 -13.28257 -13.16118 -13.14304 -13.03612 -12.93140 -12.82221 -12.79370 -12.69420 -12.65476 -12.48296 -12.32210 -12.26949 -12.11121 -12.00114 -11.76638 -11.42350 -11.38942 -11.02331 -10.95165 -10.90206 -10.66643 -10.01557 -8.66790 -8.24533 -5.65167 0.87214 1.18917 1.30715 1.42168 1.66508 2.32327 2.47245 2.78349 3.00252 3.11760 3.33344 3.53586 3.71971 3.75662 3.79718 3.85913 3.94758 3.97304 4.02331 4.24948 4.26998 4.36203 4.43469 4.46875 4.55340 4.59889 4.60755 4.64657 4.68492 4.73541 4.76088 4.76309 4.80737 4.85510 4.88969 4.89410 4.95501 4.99027 5.05304 5.09129 5.13882 5.20090 5.27574 5.33437 5.35792 5.45360 5.54108 5.71617 5.88677 6.17587 6.35855 6.90858 7.18689 7.56287 7.99897 8.93358 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004768 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.830026 B = 5870.954348 C = 6103.143696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.123 3.877 3 C -0.131 4.131 4 C -0.176 4.176 5 O -0.354 6.354 6 C 0.678 3.322 7 O -0.580 6.580 8 N -0.619 5.619 9 C 0.118 3.882 10 H 0.091 0.909 11 C 0.140 3.860 12 N -0.581 5.581 13 C -0.239 4.239 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.922 3.078 18 H -0.292 1.292 19 H -0.270 1.270 20 H -0.306 1.306 21 C 0.094 3.906 22 C -0.182 4.182 23 C -0.195 4.195 24 C 0.075 3.925 25 O -0.368 6.368 26 C 0.306 3.694 27 C -0.144 4.144 28 C -0.170 4.170 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.060 0.940 51 H 0.035 0.965 52 H 0.097 0.903 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 13.986 -10.378 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.087 3.913 3 C -0.188 4.188 4 C -0.233 4.233 5 O -0.269 6.269 6 C 0.434 3.566 7 O -0.470 6.470 8 N -0.367 5.367 9 C 0.014 3.986 10 H 0.109 0.891 11 C 0.014 3.986 12 N -0.301 5.301 13 C -0.369 4.369 14 H 0.079 0.921 15 C -0.196 4.196 16 N -0.578 5.578 17 Si 0.753 3.247 18 H -0.221 1.221 19 H -0.195 1.195 20 H -0.235 1.235 21 C -0.013 4.013 22 C -0.220 4.220 23 C -0.235 4.235 24 C -0.002 4.002 25 O -0.285 6.285 26 C 0.184 3.816 27 C -0.202 4.202 28 C -0.229 4.229 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.128 0.872 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.116 0.884 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.061 13.977 -10.485 21.231 hybrid contribution -1.421 0.067 -0.084 1.425 sum 10.641 14.044 -10.568 20.546 Atomic orbital electron populations 1.22493 0.94903 1.02941 1.03711 1.22481 0.93936 0.93152 0.81766 1.21865 1.02720 0.89877 1.04352 1.22452 1.01633 1.02038 0.97157 1.86343 1.70016 1.22749 1.47783 1.17275 0.77594 0.81031 0.80660 1.90874 1.44236 1.69264 1.42669 1.48264 1.62160 1.11254 1.14975 1.23301 1.00176 0.79187 0.95979 0.89088 1.21403 0.92726 0.84582 0.99931 1.43684 1.64602 0.99868 1.21944 1.18500 1.06515 1.12494 0.99369 0.92139 1.25789 0.97498 0.99975 0.96300 1.69889 1.27962 1.45054 1.14859 0.86225 0.77625 0.79129 0.81697 1.22067 1.19502 1.23496 1.21355 1.00950 0.86504 0.92462 1.23075 0.99102 0.96639 1.03208 1.23341 0.91870 1.06303 1.01998 1.23553 0.90676 0.93515 0.92428 1.89131 1.52891 1.33035 1.53473 1.22261 0.94399 0.86552 0.78420 1.22113 0.92857 1.01655 1.03582 1.22462 0.99313 0.98185 1.02922 0.92255 0.88584 0.93248 0.90578 0.87875 0.91248 0.92338 0.88896 0.91789 0.91026 0.94775 0.92793 0.87871 0.90540 0.87444 0.87342 0.90813 0.93155 0.87219 0.89144 0.88821 0.92060 0.94562 0.88431 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 8.38 71.98 0.60 -3.78 16 2 C 0.12 2.66 1.13 -10.80 -0.01 2.65 16 3 C -0.13 -1.76 8.85 71.98 0.64 -1.12 16 4 C -0.18 -3.70 8.27 71.98 0.60 -3.11 16 5 O -0.35 -9.60 6.82 -55.42 -0.38 -9.98 16 6 C 0.68 23.23 7.32 129.79 0.95 24.18 16 7 O -0.58 -22.53 9.85 19.81 0.20 -22.33 16 8 N -0.62 -21.60 2.74 -986.96 -2.71 -24.31 16 9 C 0.12 4.57 3.67 45.37 0.17 4.74 16 10 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 11 C 0.14 6.26 3.51 86.38 0.30 6.56 16 12 N -0.58 -26.81 2.34 -678.03 -1.58 -28.40 16 13 C -0.24 -12.74 8.22 84.03 0.69 -12.05 16 14 H 0.06 3.51 7.16 -2.91 -0.02 3.49 16 15 C 0.00 0.12 5.32 84.86 0.45 0.57 16 16 N -0.93 -56.14 13.97 21.65 0.30 -55.83 16 17 Si 0.92 47.97 24.88 68.60 1.71 49.68 16 18 H -0.29 -15.21 6.69 99.48 0.67 -14.54 16 19 H -0.27 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 21 C 0.09 3.69 6.59 44.99 0.30 3.99 16 22 C -0.18 -6.62 9.78 30.60 0.30 -6.32 16 23 C -0.19 -6.58 10.35 30.59 0.32 -6.26 16 24 C 0.07 2.97 6.62 72.64 0.48 3.46 16 25 O -0.37 -12.83 10.95 -148.98 -1.63 -14.46 16 26 C 0.31 9.32 1.08 44.86 0.05 9.37 16 27 C -0.14 -3.33 8.91 71.98 0.64 -2.69 16 28 C -0.17 -4.80 8.90 71.98 0.64 -4.15 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.58 5.96 -2.39 -0.01 1.56 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.06 1.64 5.99 -2.39 -0.01 1.63 16 36 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 3.30 5.86 -2.39 -0.01 3.29 16 39 H 0.03 1.72 3.33 -2.39 -0.01 1.71 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.08 3.25 6.61 -2.38 -0.02 3.23 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 45 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.05 2.31 7.98 -2.38 -0.02 2.29 16 47 H 0.11 4.45 8.14 -2.39 -0.02 4.43 16 48 H 0.09 1.91 6.49 -2.39 -0.02 1.90 16 49 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.08 2.15 7.03 -2.39 -0.02 2.13 16 Total: -1.00 -65.51 402.47 3.85 -61.66 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.84 Total: 27.95 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 7.11 Total: 16.03 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.99 Total: -108.54 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.81 Total: -46.78 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.71 Total: 49.68 kcal Total: -65.51 3.85 -61.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862232539.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.566 kcal (2) G-P(sol) polarization free energy of solvation -65.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds