Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46844 * 110.99913 * 2 1 4 4 C 1.53040 * 109.52413 * 185.84411 * 3 2 1 5 5 C 1.53122 * 109.27396 * 300.82003 * 4 3 2 6 6 C 1.53003 * 109.51735 * 177.55932 * 5 4 3 7 7 N 1.46503 * 109.46664 * 174.99979 * 6 5 4 8 8 C 1.34781 * 119.99585 * 179.97438 * 7 6 5 9 9 S 1.71196 * 120.00064 * 354.92059 * 8 7 6 10 10 N 1.34778 * 119.99501 * 174.91803 * 8 7 6 11 11 C 1.47079 * 120.87796 * 184.76195 * 10 8 7 12 12 C 1.53696 * 108.27881 * 128.75766 * 11 10 8 13 13 N 1.46901 * 109.25707 * 54.07981 * 12 11 10 14 14 C 1.46900 * 110.99977 * 172.61311 * 13 12 11 15 15 C 1.50697 * 109.46979 * 294.30242 * 14 13 12 16 16 H 1.08002 * 120.00361 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99731 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47204 * 89.99968 * 19 17 15 21 21 H 1.48494 * 109.47084 * 210.00343 * 19 17 15 22 22 H 1.48507 * 109.47261 * 330.00299 * 19 17 15 23 23 C 1.46901 * 111.26629 * 296.75916 * 13 12 11 24 24 C 1.47073 * 120.88344 * 5.03924 * 10 8 7 25 25 C 1.53122 * 109.15958 * 57.65748 * 5 4 3 26 26 C 1.46848 * 111.00214 * 124.21517 * 2 1 3 27 27 H 1.08997 * 109.47567 * 59.99965 * 1 2 3 28 28 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46883 * 299.99291 * 1 2 3 30 30 H 1.09000 * 109.46082 * 65.82569 * 3 2 1 31 31 H 1.09004 * 109.45188 * 305.85512 * 3 2 1 32 32 H 1.08996 * 109.50019 * 180.87923 * 4 3 2 33 33 H 1.08997 * 109.50352 * 60.76349 * 4 3 2 34 34 H 1.08996 * 109.52435 * 297.68390 * 5 4 3 35 35 H 1.08994 * 109.47357 * 294.99868 * 6 5 4 36 36 H 1.08997 * 109.47183 * 55.00116 * 6 5 4 37 37 H 0.96993 * 120.00584 * 0.02562 * 7 6 5 38 38 H 1.09000 * 109.63153 * 248.52450 * 11 10 8 39 39 H 1.09001 * 109.62783 * 9.10422 * 11 10 8 40 40 H 1.09007 * 109.64545 * 294.07964 * 12 11 10 41 41 H 1.08995 * 109.42284 * 173.95113 * 12 11 10 42 42 H 1.08998 * 109.47308 * 54.30226 * 14 13 12 43 43 H 1.08995 * 109.46884 * 174.30324 * 14 13 12 44 44 H 0.97000 * 120.00351 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.49382 * 303.14187 * 23 13 12 46 46 H 1.09008 * 109.48905 * 183.06409 * 23 13 12 47 47 H 1.08993 * 109.63225 * 350.90190 * 24 10 8 48 48 H 1.09008 * 109.62720 * 111.47882 * 24 10 8 49 49 H 1.08994 * 109.50427 * 62.28240 * 25 5 4 50 50 H 1.09001 * 109.49533 * 182.40031 * 25 5 4 51 51 H 1.09006 * 109.45787 * 294.17265 * 26 2 1 52 52 H 1.08999 * 109.46553 * 54.14072 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1469 5 6 4.1188 0.5370 1.0143 6 6 5.6362 0.4450 0.8402 7 7 6.2227 -0.2134 2.0102 8 6 7.5551 -0.4057 2.0777 9 16 8.5473 0.0003 0.7430 10 7 8.1061 -0.9176 3.1962 11 6 9.5656 -1.0389 3.3312 12 6 9.9816 -0.3957 4.6636 13 7 9.2052 -0.9980 5.7556 14 6 9.6925 -0.5393 7.0633 15 6 11.0928 -1.0502 7.2850 16 1 11.5726 -1.6555 6.5301 17 6 11.7611 -0.7458 8.4519 18 7 12.9833 -1.1912 8.6451 19 14 10.9311 0.3005 9.7578 20 1 10.1942 -0.5780 10.7014 21 1 11.9592 1.0728 10.5006 22 1 9.9797 1.2387 9.1096 23 6 7.7700 -0.7241 5.6030 24 6 7.2637 -1.3752 4.3115 25 6 3.5182 -0.8715 1.0206 26 6 1.9953 -0.7709 1.1337 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.7325 1.8608 0.9376 31 1 1.5633 1.9255 -0.8330 32 1 3.9098 2.3512 -0.1311 33 1 3.7813 0.8569 -1.0908 34 1 3.8898 1.0360 1.9558 35 1 5.8648 -0.1334 -0.0548 36 1 6.0519 1.4476 0.7411 37 1 5.6523 -0.5116 2.7358 38 1 9.8476 -2.0918 3.3256 39 1 10.0540 -0.5218 2.5052 40 1 9.7890 0.6767 4.6288 41 1 11.0441 -0.5694 4.8339 42 1 9.6951 0.5504 7.0883 43 1 9.0387 -0.9191 7.8483 44 1 13.4534 -0.9774 9.4662 45 1 7.6083 0.3527 5.5552 46 1 7.2286 -1.1362 6.4546 47 1 6.2294 -1.0806 4.1341 48 1 7.3286 -2.4598 4.3984 49 1 3.7814 -1.3836 0.0952 50 1 3.9101 -1.4303 1.8705 51 1 1.7326 -0.2709 2.0660 52 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865268930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = 11.702803 kcal Electronic energy + Delta-G solvation = -27853.519658 eV Core-core repulsion = 24206.110493 eV Total energy + Delta-G solvation = -3647.409165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24319 -40.19846 -38.56029 -36.59163 -34.80867 -34.14797 -32.44539 -31.83244 -30.88172 -29.10664 -27.67638 -25.83369 -25.09911 -24.47311 -23.90151 -22.86039 -22.79926 -21.20936 -20.62905 -19.31614 -18.90735 -18.31594 -16.86535 -16.64615 -16.49054 -16.31967 -16.14180 -16.03559 -15.77791 -15.57186 -15.48301 -15.40300 -15.24686 -14.53460 -14.43770 -14.25070 -13.85917 -13.77773 -13.34841 -13.33476 -13.06379 -12.91623 -12.74420 -12.65275 -12.47556 -12.39683 -12.27738 -12.15336 -12.11272 -11.88452 -11.87554 -11.70482 -11.46356 -11.42266 -11.28578 -10.78389 -9.94322 -9.27114 -9.20669 -8.97398 -8.67838 -8.27977 -6.32001 0.34933 0.81593 1.34490 1.36747 1.45964 1.49161 2.18748 2.33731 3.00010 3.00974 3.07699 3.56926 3.66259 3.72155 3.80610 3.86026 3.94052 4.11475 4.19032 4.26080 4.27616 4.34795 4.37075 4.45817 4.54822 4.58871 4.62949 4.65801 4.68926 4.72499 4.74936 4.79520 4.85306 4.86617 4.91248 4.92548 5.00207 5.03546 5.03975 5.12117 5.14651 5.21254 5.41290 5.43338 5.50605 5.66921 5.90069 6.13241 6.14917 6.19607 6.27430 6.56780 6.75178 7.31468 8.88256 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002203 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.123769 B =12705.233579 C =13670.927101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.058 3.942 4 C -0.106 4.106 5 C -0.090 4.090 6 C 0.137 3.863 7 N -0.665 5.665 8 C 0.587 3.413 9 S -0.745 6.745 10 N -0.560 5.560 11 C 0.124 3.876 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.173 3.827 15 C -0.518 4.518 16 H 0.041 0.959 17 C 0.007 3.993 18 N -0.946 5.946 19 Si 0.947 3.053 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.252 1.252 23 C 0.036 3.964 24 C 0.106 3.894 25 C -0.111 4.111 26 C 0.056 3.944 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.022 0.978 41 H 0.076 0.924 42 H -0.015 1.015 43 H 0.039 0.961 44 H 0.266 0.734 45 H 0.032 0.968 46 H 0.108 0.892 47 H 0.117 0.883 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.037 0.963 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.087 3.322 -13.389 33.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.070 4.070 4 C -0.145 4.145 5 C -0.109 4.109 6 C 0.014 3.986 7 N -0.298 5.298 8 C 0.223 3.777 9 S -0.617 6.617 10 N -0.268 5.268 11 C 0.000 4.000 12 C -0.069 4.069 13 N -0.263 5.263 14 C 0.046 3.954 15 C -0.556 4.556 16 H 0.059 0.941 17 C -0.190 4.190 18 N -0.587 5.587 19 Si 0.771 3.229 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.176 1.176 23 C -0.093 4.093 24 C -0.019 4.019 25 C -0.149 4.149 26 C -0.072 4.072 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.253 0.747 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.040 0.960 41 H 0.095 0.905 42 H 0.003 0.997 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.126 0.874 47 H 0.135 0.865 48 H 0.121 0.879 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.055 0.945 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -29.168 2.861 -14.548 32.720 hybrid contribution -0.451 1.199 2.454 2.768 sum -29.619 4.060 -12.094 32.250 Atomic orbital electron populations 1.22375 0.86460 1.02525 1.00976 1.61939 1.08425 1.14207 1.43844 1.22085 0.95024 0.88944 1.00961 1.21519 0.94354 1.00547 0.98036 1.21427 0.91386 0.97500 1.00624 1.21735 0.92520 0.97849 0.86480 1.45058 1.02838 1.57994 1.23919 1.21648 0.86995 0.81011 0.88060 1.93574 1.62171 1.76260 1.29742 1.47439 1.09096 1.56929 1.13305 1.22281 0.77011 1.02816 0.97844 1.22321 0.99463 0.95170 0.89940 1.61841 1.02503 1.59289 1.02639 1.19932 0.94829 0.92823 0.87794 1.21249 0.98964 1.31962 1.03408 0.94076 1.25851 0.95319 0.97169 1.00705 1.70047 1.13472 1.47630 1.27550 0.85720 0.78664 0.79411 0.79122 1.18673 1.21279 1.17572 1.22578 0.89557 0.98545 0.98588 1.22333 0.94357 1.01559 0.83625 1.21661 0.94556 0.95870 1.02775 1.22093 0.95126 0.98569 0.91372 0.90907 0.90969 0.95480 0.94617 0.90013 0.90189 0.91203 0.89706 0.90646 0.90878 0.74696 0.89611 0.87023 0.95957 0.90536 0.99701 0.94314 0.92485 0.95017 0.87384 0.86528 0.87873 0.91612 0.90655 0.94474 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.59 127.69 1.22 1.43 16 2 N -0.56 -6.10 4.91 -922.57 -4.53 -10.63 16 3 C 0.06 0.55 5.46 86.33 0.47 1.02 16 4 C -0.11 -1.06 5.38 30.65 0.16 -0.90 16 5 C -0.09 -0.87 2.29 -10.71 -0.02 -0.90 16 6 C 0.14 2.12 4.54 86.38 0.39 2.51 16 7 N -0.67 -10.81 5.23 -350.17 -1.83 -12.64 16 8 C 0.59 14.80 7.72 179.05 1.38 16.18 16 9 S -0.74 -26.26 27.08 -56.49 -1.53 -27.79 16 10 N -0.56 -13.86 3.00 -705.07 -2.12 -15.97 16 11 C 0.12 3.83 6.49 86.50 0.56 4.39 16 12 C 0.06 2.19 5.47 86.54 0.47 2.67 16 13 N -0.54 -19.47 4.62 -898.88 -4.15 -23.62 16 14 C 0.17 7.60 3.79 85.56 0.32 7.92 16 15 C -0.52 -28.48 8.96 25.60 0.23 -28.25 16 16 H 0.04 2.54 7.37 -2.91 -0.02 2.52 16 17 C 0.01 0.40 5.47 84.66 0.46 0.86 16 18 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 19 Si 0.95 42.25 27.47 68.60 1.88 44.13 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 23 C 0.04 0.90 5.62 86.38 0.49 1.38 16 24 C 0.11 1.91 6.59 86.35 0.57 2.48 16 25 C -0.11 -1.03 5.22 30.65 0.16 -0.87 16 26 C 0.06 0.52 5.46 86.32 0.47 0.99 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 29 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 0.71 8.12 -2.39 -0.02 0.70 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.46 7.89 -2.39 -0.02 1.44 16 36 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 37 H 0.41 4.10 5.19 -92.71 -0.48 3.62 16 38 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.11 3.79 6.08 -2.69 -0.02 3.78 16 40 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 3.28 6.67 -2.39 -0.02 3.26 16 42 H -0.01 -0.66 7.18 -2.39 -0.02 -0.68 16 43 H 0.04 1.62 7.40 -2.39 -0.02 1.60 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.11 2.28 7.99 -2.38 -0.02 2.27 16 47 H 0.12 1.10 5.63 -2.39 -0.01 1.08 16 48 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.07 0.53 7.27 -2.39 -0.02 0.51 16 51 H 0.04 0.32 8.14 -2.38 -0.02 0.30 16 52 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 Total: -1.00 -73.78 402.15 -4.28 -78.06 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.35 Total: 15.19 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 7.35 Total: 10.92 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -12.33 Total: -120.50 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Atomic # 16 Polarization: -26.26 SS G_CDS: -1.53 Total: -27.79 kcal Total: -73.78 -4.28 -78.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.762 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds