Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00149 * 2 1 4 4 H 1.48505 * 109.46958 * 269.99924 * 3 2 1 5 5 H 1.48504 * 109.46980 * 29.99496 * 3 2 1 6 6 H 1.48496 * 109.47442 * 149.99833 * 3 2 1 7 7 C 1.37884 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99512 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46857 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46964 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47049 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46832 * 55.00084 * 12 11 10 14 14 N 1.46899 * 109.47254 * 294.99897 * 12 11 10 15 15 C 1.50706 * 109.47238 * 174.99770 * 12 11 10 16 16 O 1.21277 * 119.99595 * 100.00083 * 15 12 11 17 17 N 1.34776 * 119.99828 * 280.00543 * 15 12 11 18 18 C 1.46506 * 119.99362 * 179.97438 * 17 15 12 19 19 C 1.53006 * 109.46805 * 179.97438 * 18 17 15 20 20 H 1.09000 * 110.25715 * 60.59607 * 19 18 17 21 21 C 1.55077 * 110.29226 * 182.75438 * 19 18 17 22 22 C 1.54536 * 100.86644 * 154.63634 * 21 19 18 23 23 C 1.53611 * 103.09458 * 326.66052 * 22 21 19 24 24 O 1.43430 * 107.39211 * 20.58646 * 23 22 21 25 25 C 1.52266 * 110.37206 * 85.12289 * 22 21 19 26 26 C 1.53258 * 109.24319 * 177.63744 * 25 22 21 27 27 O 1.42916 * 109.30278 * 303.76501 * 26 25 22 28 28 C 1.42924 * 114.25166 * 61.81235 * 27 26 25 29 29 C 1.52269 * 110.37522 * 208.20132 * 22 21 19 30 30 H 0.96997 * 119.99956 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47345 * 60.00374 * 9 7 2 32 32 H 1.09002 * 109.47150 * 299.99744 * 9 7 2 33 33 H 1.08998 * 109.47254 * 59.99808 * 10 9 7 34 34 H 1.08998 * 109.46957 * 299.99910 * 10 9 7 35 35 H 1.08998 * 109.47252 * 59.99856 * 11 10 9 36 36 H 1.08998 * 109.47250 * 299.99780 * 11 10 9 37 37 H 1.00897 * 110.99782 * 299.99929 * 14 12 11 38 38 H 1.00900 * 110.99667 * 63.95815 * 14 12 11 39 39 H 0.96999 * 120.00350 * 359.97438 * 17 15 12 40 40 H 1.08993 * 109.47302 * 299.99609 * 18 17 15 41 41 H 1.09001 * 109.47054 * 59.99910 * 18 17 15 42 42 H 1.09000 * 111.13686 * 272.53453 * 21 19 18 43 43 H 1.08994 * 111.14093 * 36.73685 * 21 19 18 44 44 H 1.09004 * 109.86070 * 261.12966 * 23 22 21 45 45 H 1.09004 * 109.97190 * 140.10455 * 23 22 21 46 46 H 1.08990 * 109.51117 * 297.56614 * 25 22 21 47 47 H 1.08999 * 109.50763 * 57.71427 * 25 22 21 48 48 H 1.08998 * 109.49902 * 183.81725 * 26 25 22 49 49 H 1.09000 * 109.50123 * 63.71008 * 26 25 22 50 50 H 1.09006 * 109.50066 * 178.24052 * 28 27 26 51 51 H 1.08994 * 109.50482 * 58.13402 * 28 27 26 52 52 H 1.09006 * 109.50812 * 302.28626 * 29 22 21 53 53 H 1.08994 * 109.50686 * 62.37948 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0615 -4.0790 0.0015 13 1 5.6269 -4.6183 -0.8402 14 7 5.6730 -4.7353 1.2569 15 6 7.5635 -4.0809 -0.1225 16 8 8.2530 -4.2335 0.8634 17 7 8.1403 -3.9129 -1.3289 18 6 9.6004 -3.9142 -1.4492 19 6 9.9916 -3.7069 -2.9138 20 1 9.6140 -2.7496 -3.2735 21 6 11.5326 -3.7741 -3.0736 22 6 11.6536 -4.2077 -4.5519 23 6 10.4243 -5.1067 -4.7527 24 8 9.4812 -4.7796 -3.7227 25 6 11.5923 -2.9926 -5.4675 26 6 11.7737 -3.4452 -6.9204 27 8 13.0019 -4.1658 -7.0409 28 6 13.0631 -5.3574 -6.2540 29 6 12.9405 -4.9917 -4.7709 30 1 -0.4850 0.8400 -0.0004 31 1 3.8746 -0.6801 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.6585 -3.1502 -0.8892 34 1 3.6578 -3.1505 0.8907 35 1 5.9149 -2.1228 0.8909 36 1 5.9149 -2.1227 -0.8890 37 1 6.0639 -4.2537 2.0527 38 1 4.6693 -4.8044 1.3332 39 1 7.5887 -3.7911 -2.1175 40 1 10.0155 -3.1081 -0.8444 41 1 9.9928 -4.8694 -1.1004 42 1 11.9875 -2.7968 -2.9121 43 1 11.9646 -4.5215 -2.4082 44 1 10.7142 -6.1543 -4.6703 45 1 9.9829 -4.9207 -5.7318 46 1 10.6254 -2.5020 -5.3571 47 1 12.3873 -2.2959 -5.2014 48 1 11.7984 -2.5725 -7.5729 49 1 10.9435 -4.0908 -7.2067 50 1 14.0149 -5.8595 -6.4275 51 1 12.2449 -6.0208 -6.5340 52 1 13.7936 -4.3810 -4.4748 53 1 12.9187 -5.9017 -4.1714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867993254.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -180.332250 kcal Electronic energy + Delta-G solvation = -29966.387248 eV Core-core repulsion = 25835.605196 eV Total energy + Delta-G solvation = -4130.782052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83696 -40.87436 -39.15603 -37.47405 -35.94923 -35.21582 -34.95756 -33.26044 -32.21324 -32.00627 -29.78650 -28.64808 -27.42443 -26.06926 -24.73722 -24.17452 -23.45882 -22.38523 -21.81547 -21.05448 -20.01423 -18.89247 -18.48238 -17.79226 -17.55345 -17.04291 -16.84578 -16.52808 -16.46526 -16.13462 -16.09853 -15.90547 -15.62326 -15.48655 -14.96435 -14.92298 -14.74753 -14.40282 -14.30026 -14.00455 -13.76998 -13.66763 -13.52423 -13.22924 -13.05110 -13.00696 -12.67126 -12.63035 -12.43315 -12.31651 -12.27101 -11.92331 -11.80742 -11.71408 -11.46361 -11.45624 -11.33752 -11.13608 -10.79580 -10.76728 -10.61485 -10.36975 -10.12739 -9.66607 -8.29700 -6.33616 1.34369 1.36948 1.48338 1.59848 2.08379 2.35212 2.73300 2.95125 3.05675 3.24127 3.49733 3.65260 3.67682 3.75765 3.93591 3.98676 4.00593 4.04796 4.05855 4.08722 4.11614 4.20046 4.37947 4.46256 4.49449 4.52505 4.59220 4.61013 4.65612 4.68943 4.74125 4.76831 4.83856 4.93975 4.95211 4.96148 5.01929 5.05766 5.09402 5.10930 5.22600 5.24814 5.39871 5.50769 5.58873 5.66723 5.96723 6.06336 6.25311 6.28140 6.48467 6.52618 6.75005 7.22163 7.31124 8.86916 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.001964 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.127610 B =14256.191096 C =15548.728858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.135 4.135 12 C 0.082 3.918 13 H 0.116 0.884 14 N -0.835 5.835 15 C 0.523 3.477 16 O -0.574 6.574 17 N -0.715 5.715 18 C 0.123 3.877 19 C 0.074 3.926 20 H 0.089 0.911 21 C -0.133 4.133 22 C -0.088 4.088 23 C 0.056 3.944 24 O -0.393 6.393 25 C -0.140 4.140 26 C 0.054 3.946 27 O -0.403 6.403 28 C 0.054 3.946 29 C -0.136 4.136 30 H 0.265 0.735 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.346 0.654 38 H 0.356 0.644 39 H 0.414 0.586 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.056 0.944 50 H 0.105 0.895 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.214 -9.059 -13.914 35.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.175 4.175 12 C -0.033 4.033 13 H 0.134 0.866 14 N -0.367 5.367 15 C 0.309 3.691 16 O -0.453 6.453 17 N -0.368 5.368 18 C 0.000 4.000 19 C 0.016 3.984 20 H 0.107 0.893 21 C -0.171 4.171 22 C -0.088 4.088 23 C -0.021 4.021 24 O -0.313 6.313 25 C -0.177 4.177 26 C -0.022 4.022 27 O -0.322 6.322 28 C -0.022 4.022 29 C -0.174 4.174 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.121 0.879 49 H 0.074 0.926 50 H 0.123 0.877 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 31.922 -9.759 -13.584 36.039 hybrid contribution -1.209 1.634 0.175 2.040 sum 30.713 -8.125 -13.409 34.483 Atomic orbital electron populations 1.70072 1.08287 1.28093 1.52750 1.26054 0.95635 1.03604 0.94286 0.85644 0.79362 0.78297 0.79232 1.18941 1.21211 1.17265 1.21534 0.92266 0.93076 1.50114 0.94822 1.19534 0.93739 0.95354 0.96375 1.21330 0.93262 0.97220 1.01328 1.22257 0.96308 0.95851 1.03119 1.21381 0.90892 0.94867 0.96186 0.86650 1.58672 1.17111 1.57572 1.03382 1.20767 0.90667 0.74719 0.82903 1.90640 1.65678 1.50493 1.38484 1.45819 1.07994 1.73434 1.09510 1.21564 0.80369 1.02388 0.95723 1.23266 0.94522 0.91373 0.89217 0.89325 1.23250 0.93987 1.04271 0.95574 1.21479 0.95747 0.96129 0.95479 1.23334 0.88400 0.99021 0.91300 1.88490 1.43869 1.54146 1.44813 1.22080 1.03599 0.96946 0.95098 1.22767 0.86408 0.96724 0.96292 1.87916 1.38030 1.38713 1.67554 1.22783 1.03196 0.86547 0.89723 1.22034 0.96596 1.01057 0.97664 0.92573 0.96770 0.96148 0.92216 0.92952 0.92384 0.90112 0.84019 0.82887 0.74974 0.90062 0.92147 0.87973 0.89450 0.90756 0.90855 0.90096 0.90213 0.87876 0.92611 0.87679 0.92607 0.90321 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 7 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.31 4.92 30.60 0.15 -3.16 16 11 C -0.14 -3.78 4.84 30.59 0.15 -3.63 16 12 C 0.08 2.09 3.21 44.17 0.14 2.23 16 13 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 14 N -0.84 -22.63 8.94 -171.80 -1.54 -24.16 16 15 C 0.52 14.09 7.08 87.66 0.62 14.71 16 16 O -0.57 -19.57 16.25 -3.02 -0.05 -19.62 16 17 N -0.72 -14.62 5.48 -463.04 -2.54 -17.16 16 18 C 0.12 2.16 5.40 86.38 0.47 2.63 16 19 C 0.07 0.94 3.24 31.31 0.10 1.04 16 20 H 0.09 1.00 7.92 -2.39 -0.02 0.98 16 21 C -0.13 -1.19 5.50 31.83 0.18 -1.02 16 22 C -0.09 -0.76 0.53 -51.94 -0.03 -0.79 16 23 C 0.06 0.64 6.15 72.19 0.44 1.08 16 24 O -0.39 -6.34 10.90 -148.98 -1.62 -7.96 16 25 C -0.14 -1.17 4.74 30.44 0.14 -1.03 16 26 C 0.05 0.52 6.67 72.07 0.48 1.00 16 27 O -0.40 -5.27 10.74 -148.98 -1.60 -6.87 16 28 C 0.05 0.46 6.68 72.07 0.48 0.94 16 29 C -0.14 -1.01 4.77 30.44 0.15 -0.86 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 32 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.86 6.87 -2.39 -0.02 1.84 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.35 9.72 8.58 -89.70 -0.77 8.95 16 38 H 0.36 9.11 7.55 -89.69 -0.68 8.43 16 39 H 0.41 7.06 8.41 -92.71 -0.78 6.28 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.10 0.68 8.00 -2.39 -0.02 0.66 16 43 H 0.09 0.79 7.92 -2.39 -0.02 0.77 16 44 H 0.07 0.80 7.70 -2.38 -0.02 0.78 16 45 H 0.07 0.79 6.39 -2.38 -0.02 0.77 16 46 H 0.08 0.65 7.72 -2.39 -0.02 0.64 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 0.49 6.74 -2.39 -0.02 0.47 16 50 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.06 0.42 7.68 -2.39 -0.02 0.41 16 52 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 53 H 0.09 0.52 8.00 -2.39 -0.02 0.50 16 Total: -1.00 -73.68 409.34 -2.22 -75.90 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -1.36 Total: 30.06 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.30 Total: -16.76 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.77 Total: -100.56 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -3.27 Total: -34.46 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -73.68 -2.22 -75.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867993254.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.428 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds