Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47101 * 304.99753 * 12 11 10 14 14 N 1.46896 * 109.47082 * 65.00013 * 12 11 10 15 15 C 1.50699 * 109.47337 * 185.00170 * 12 11 10 16 16 O 1.21278 * 120.00013 * 259.99996 * 15 12 11 17 17 N 1.34779 * 120.00211 * 79.99787 * 15 12 11 18 18 C 1.46500 * 120.00112 * 179.97438 * 17 15 12 19 19 C 1.53000 * 109.47020 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.32700 * 307.24223 * 19 18 17 21 21 C 1.54615 * 110.36865 * 185.00345 * 19 18 17 22 22 C 1.53926 * 103.86169 * 217.27852 * 21 19 18 23 23 C 1.53887 * 104.65289 * 0.18162 * 22 21 19 24 24 O 1.44476 * 110.36861 * 69.60321 * 19 18 17 25 25 C 1.52480 * 110.34055 * 241.43831 * 22 21 19 26 26 C 1.53214 * 109.21041 * 293.01305 * 25 22 21 27 27 O 1.42915 * 109.33812 * 303.45945 * 26 25 22 28 28 C 1.42927 * 114.20896 * 61.68213 * 27 26 25 29 29 C 1.52482 * 110.34264 * 118.92490 * 22 21 19 30 30 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 1.00903 * 111.00100 * 296.04575 * 14 12 11 38 38 H 1.00898 * 110.99866 * 60.00466 * 14 12 11 39 39 H 0.97003 * 119.99979 * 0.02562 * 17 15 12 40 40 H 1.09001 * 109.47584 * 300.00355 * 18 17 15 41 41 H 1.09000 * 109.47218 * 60.00612 * 18 17 15 42 42 H 1.09000 * 110.55021 * 335.87470 * 21 19 18 43 43 H 1.09007 * 110.55095 * 98.54287 * 21 19 18 44 44 H 1.09001 * 110.39486 * 142.34874 * 23 22 21 45 45 H 1.09000 * 110.39348 * 264.62937 * 23 22 21 46 46 H 1.08999 * 109.51616 * 52.93704 * 25 22 21 47 47 H 1.09003 * 109.51088 * 173.09674 * 25 22 21 48 48 H 1.09001 * 109.48980 * 183.50525 * 26 25 22 49 49 H 1.08997 * 109.49327 * 63.42619 * 26 25 22 50 50 H 1.09002 * 109.49182 * 178.36030 * 28 27 26 51 51 H 1.08997 * 109.51465 * 58.29589 * 28 27 26 52 52 H 1.09002 * 109.51439 * 186.90709 * 29 22 21 53 53 H 1.08999 * 109.50987 * 307.01408 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 1 5.6267 -4.6180 0.8425 14 7 5.6726 -4.7365 -1.2545 15 6 7.5631 -4.0812 0.1242 16 8 8.2527 -4.2346 -0.8616 17 7 8.1401 -3.9123 1.3305 18 6 9.6002 -3.9147 1.4509 19 6 9.9914 -3.7062 2.9153 20 1 9.5013 -2.8186 3.3155 21 6 11.5266 -3.5798 3.0494 22 6 11.8429 -4.3090 4.3676 23 6 10.4763 -4.7968 4.8802 24 8 9.6466 -4.8701 3.6986 25 6 12.4725 -3.3459 5.3681 26 6 13.8529 -2.9200 4.8578 27 8 14.6556 -4.0820 4.6385 28 6 14.1349 -4.9764 3.6527 29 6 12.7671 -5.4940 4.1093 30 1 -0.4850 0.8401 -0.0004 31 1 3.8751 -0.6798 -0.8895 32 1 3.8745 -0.6810 0.8905 33 1 3.6577 -3.1507 0.8897 34 1 3.6584 -3.1504 -0.8902 35 1 5.9147 -2.1229 -0.8901 36 1 5.9147 -2.1231 0.8899 37 1 4.6688 -4.8056 -1.3308 38 1 6.0635 -4.2555 -2.0507 39 1 7.5886 -3.7900 2.1191 40 1 9.9920 -4.8706 1.1031 41 1 10.0160 -3.1095 0.8452 42 1 12.0253 -4.0687 2.2125 43 1 11.8205 -2.5318 3.1093 44 1 10.5720 -5.7809 5.3389 45 1 10.0620 -4.0846 5.5938 46 1 11.8372 -2.4668 5.4767 47 1 12.5780 -3.8413 6.3333 48 1 14.3332 -2.2808 5.5986 49 1 13.7417 -2.3727 3.9218 50 1 14.8181 -5.8164 3.5267 51 1 14.0267 -4.4501 2.7044 52 1 12.8838 -6.0713 5.0264 53 1 12.3386 -6.1272 3.3324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867993255.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = -180.061252 kcal Electronic energy + Delta-G solvation = -29973.061434 eV Core-core repulsion = 25842.291134 eV Total energy + Delta-G solvation = -4130.770300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77702 -40.87340 -39.14997 -37.47846 -35.98003 -35.21578 -34.89033 -33.26001 -32.16448 -31.96798 -29.76286 -28.53881 -27.67409 -26.00352 -24.67218 -23.78108 -23.64603 -22.50409 -21.82334 -21.12925 -19.88331 -18.89219 -18.51055 -17.78436 -17.46067 -17.06015 -16.71799 -16.48258 -16.42018 -16.23790 -16.16004 -15.78667 -15.68696 -15.51610 -15.11930 -14.90131 -14.81536 -14.44183 -14.30983 -13.99826 -13.75627 -13.53847 -13.39492 -13.28995 -13.00252 -12.84573 -12.59530 -12.51231 -12.40669 -12.39284 -12.26716 -11.92572 -11.79201 -11.70774 -11.45634 -11.42463 -11.33265 -11.15858 -10.81591 -10.77058 -10.75895 -10.38306 -10.14567 -9.66524 -8.29598 -6.33561 1.35430 1.36371 1.48288 1.59252 2.09115 2.35323 2.80390 2.96919 3.05864 3.32392 3.54200 3.65367 3.68567 3.75663 3.85947 3.98805 4.03626 4.06904 4.08201 4.10962 4.23994 4.24741 4.38108 4.46432 4.49292 4.51449 4.58817 4.62622 4.65958 4.71201 4.74215 4.79466 4.82129 4.88587 4.96136 4.96511 5.01250 5.05592 5.11143 5.12188 5.18893 5.27554 5.40638 5.51247 5.58861 5.66849 5.81796 6.06357 6.26959 6.28236 6.48381 6.51372 6.75130 7.21247 7.31194 8.87023 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.001905 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.609900 B =14696.498415 C =15653.862258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.135 4.135 12 C 0.082 3.918 13 H 0.116 0.884 14 N -0.835 5.835 15 C 0.523 3.477 16 O -0.573 6.573 17 N -0.717 5.717 18 C 0.128 3.872 19 C 0.069 3.931 20 H 0.090 0.910 21 C -0.138 4.138 22 C -0.088 4.088 23 C 0.052 3.948 24 O -0.387 6.387 25 C -0.138 4.138 26 C 0.054 3.946 27 O -0.404 6.404 28 C 0.057 3.943 29 C -0.137 4.137 30 H 0.265 0.735 31 H 0.013 0.987 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.356 0.644 38 H 0.346 0.654 39 H 0.414 0.586 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.058 0.942 50 H 0.100 0.900 51 H 0.056 0.944 52 H 0.073 0.927 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.627 -7.605 12.828 34.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.051 0.949 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.175 4.175 12 C -0.033 4.033 13 H 0.134 0.866 14 N -0.368 5.368 15 C 0.310 3.690 16 O -0.452 6.452 17 N -0.369 5.369 18 C 0.004 3.996 19 C 0.011 3.989 20 H 0.108 0.892 21 C -0.176 4.176 22 C -0.088 4.088 23 C -0.024 4.024 24 O -0.306 6.306 25 C -0.175 4.175 26 C -0.022 4.022 27 O -0.323 6.323 28 C -0.019 4.019 29 C -0.175 4.175 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.250 0.750 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.121 0.879 49 H 0.076 0.924 50 H 0.118 0.882 51 H 0.074 0.926 52 H 0.092 0.908 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 32.395 -8.464 12.457 35.725 hybrid contribution -1.284 1.702 -0.145 2.137 sum 31.111 -6.762 12.313 34.135 Atomic orbital electron populations 1.70075 1.08306 1.28088 1.52756 1.26058 0.95638 1.03624 0.94289 0.85644 0.79575 0.78288 0.79028 1.19563 1.21062 1.16749 1.21537 0.92291 0.93062 1.50105 0.94850 1.19535 0.93708 0.95356 0.96394 1.21329 0.93286 0.97220 1.01322 1.22257 0.96284 0.95822 1.03163 1.21383 0.90841 0.94889 0.96209 0.86620 1.58669 1.17118 1.57588 1.03403 1.20769 0.90678 0.74677 0.82886 1.90643 1.65683 1.50394 1.38499 1.45854 1.07941 1.73548 1.09589 1.21442 0.80300 1.02414 0.95394 1.23275 0.95737 0.89664 0.90193 0.89203 1.23068 0.94167 1.02659 0.97747 1.21457 0.95845 0.96078 0.95463 1.23581 0.88189 1.02724 0.87929 1.89208 1.62951 1.44636 1.33837 1.22118 0.97122 0.99678 0.98607 1.22785 0.91015 0.87208 1.01196 1.87912 1.49508 1.34419 1.60491 1.22716 0.94921 0.93488 0.90810 1.22110 0.95469 0.97149 1.02777 0.92584 0.96880 0.95986 0.92217 0.92983 0.92308 0.90098 0.82876 0.84007 0.74963 0.92180 0.89932 0.90091 0.88374 0.88640 0.90812 0.89156 0.90636 0.87850 0.92371 0.88204 0.92593 0.90788 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.09 -3.28 4.92 30.59 0.15 -3.13 16 11 C -0.14 -3.71 4.84 30.59 0.15 -3.56 16 12 C 0.08 2.06 3.21 44.17 0.14 2.20 16 13 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 14 N -0.84 -22.42 8.94 -171.81 -1.54 -23.96 16 15 C 0.52 13.90 7.08 87.66 0.62 14.52 16 16 O -0.57 -19.40 16.25 -3.02 -0.05 -19.45 16 17 N -0.72 -14.28 5.56 -463.06 -2.57 -16.85 16 18 C 0.13 2.23 5.28 86.38 0.46 2.68 16 19 C 0.07 0.86 3.33 31.14 0.10 0.97 16 20 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 21 C -0.14 -1.27 4.95 31.46 0.16 -1.12 16 22 C -0.09 -0.79 0.69 -51.91 -0.04 -0.82 16 23 C 0.05 0.56 6.74 72.28 0.49 1.05 16 24 O -0.39 -6.19 11.35 -148.98 -1.69 -7.88 16 25 C -0.14 -0.97 4.62 30.49 0.14 -0.83 16 26 C 0.05 0.46 6.64 72.05 0.48 0.94 16 27 O -0.40 -5.47 10.75 -148.98 -1.60 -7.07 16 28 C 0.06 0.59 6.64 72.05 0.48 1.07 16 29 C -0.14 -1.35 4.62 30.49 0.14 -1.21 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 32 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.83 6.87 -2.39 -0.02 1.81 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.36 9.03 7.55 -89.69 -0.68 8.35 16 38 H 0.35 9.63 8.58 -89.70 -0.77 8.86 16 39 H 0.41 6.66 8.47 -92.71 -0.79 5.87 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 0.80 6.62 -2.39 -0.02 0.79 16 43 H 0.10 0.64 6.88 -2.38 -0.02 0.62 16 44 H 0.10 0.97 7.84 -2.39 -0.02 0.95 16 45 H 0.07 0.65 7.85 -2.39 -0.02 0.63 16 46 H 0.09 0.43 8.14 -2.39 -0.02 0.42 16 47 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.06 0.42 7.03 -2.39 -0.02 0.41 16 50 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.06 0.52 7.04 -2.39 -0.02 0.51 16 52 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 53 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.74 409.38 -2.34 -76.08 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -1.37 Total: 29.70 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.30 Total: -17.04 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.81 Total: -99.94 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -3.34 Total: -34.40 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -73.74 -2.34 -76.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867993255.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.981 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds