Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47209 * 2 1 4 4 C 1.53002 * 109.46881 * 240.00706 * 2 1 3 5 5 O 1.45187 * 109.47350 * 120.00483 * 2 1 3 6 6 C 1.34644 * 117.00033 * 59.99834 * 5 2 1 7 7 O 1.21509 * 119.99631 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99832 * 180.02562 * 6 5 2 9 9 C 1.44576 * 118.64345 * 0.02562 * 8 6 5 10 10 C 1.54859 * 109.57984 * 89.26037 * 9 8 6 11 11 C 1.47089 * 110.32554 * 71.27863 * 10 9 8 12 12 H 1.09004 * 108.51346 * 58.29189 * 11 10 9 13 13 N 1.46493 * 108.51639 * 175.94286 * 11 10 9 14 14 C 1.34778 * 120.00193 * 275.00312 * 13 11 10 15 15 O 1.21688 * 119.99879 * 359.97438 * 14 13 11 16 16 C 1.46380 * 120.00062 * 180.02562 * 14 13 11 17 17 H 1.08003 * 119.99965 * 353.93251 * 16 14 13 18 18 C 1.40047 * 119.99984 * 173.93893 * 16 14 13 19 19 N 1.30672 * 119.99759 * 6.15312 * 18 16 14 20 20 Si 1.86799 * 120.00043 * 186.14852 * 18 16 14 21 21 H 1.48495 * 109.47231 * 94.98286 * 20 18 16 22 22 H 1.48495 * 109.47209 * 214.98469 * 20 18 16 23 23 H 1.48501 * 109.46935 * 334.98297 * 20 18 16 24 24 C 1.52571 * 114.32629 * 297.19869 * 11 10 9 25 25 C 1.50890 * 109.35871 * 85.00823 * 24 11 10 26 26 C 1.52997 * 109.36498 * 28.30660 * 25 24 11 27 27 C 1.52995 * 109.36177 * 147.92587 * 25 24 11 28 28 C 1.47624 * 118.65895 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47106 * 299.99464 * 1 2 3 30 30 H 1.09002 * 109.47294 * 59.99272 * 1 2 3 31 31 H 1.09000 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47446 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47190 * 300.00776 * 3 2 1 34 34 H 1.09001 * 109.46649 * 60.00256 * 3 2 1 35 35 H 1.09000 * 109.46889 * 299.99867 * 4 2 1 36 36 H 1.08995 * 109.47426 * 60.00172 * 4 2 1 37 37 H 1.09006 * 109.46731 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.45082 * 329.22680 * 9 8 6 39 39 H 1.09007 * 109.44547 * 209.28802 * 9 8 6 40 40 H 1.09000 * 109.32817 * 191.53745 * 10 9 8 41 41 H 1.08998 * 109.32715 * 311.01545 * 10 9 8 42 42 H 0.96999 * 119.99960 * 95.00124 * 13 11 10 43 43 H 0.97005 * 119.99554 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.48984 * 204.97706 * 24 11 10 45 45 H 1.09002 * 109.48840 * 325.02461 * 24 11 10 46 46 H 1.08998 * 109.47128 * 58.99581 * 26 25 24 47 47 H 1.09003 * 109.46516 * 178.98940 * 26 25 24 48 48 H 1.08996 * 109.47614 * 298.99203 * 26 25 24 49 49 H 1.08993 * 109.47527 * 60.00146 * 27 25 24 50 50 H 1.09009 * 109.46884 * 180.02562 * 27 25 24 51 51 H 1.08999 * 109.47279 * 299.99524 * 27 25 24 52 52 H 1.09001 * 108.96943 * 101.45527 * 28 8 6 53 53 H 1.09003 * 108.87065 * 342.77286 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6522 -1.9724 1.3381 7 8 0.9516 -2.5097 0.5033 8 7 2.0673 -2.6656 2.4169 9 6 2.8995 -1.9972 3.3921 10 6 2.0057 -1.3209 4.4606 11 6 1.3833 -2.3366 5.3234 12 1 2.1732 -2.9239 5.7918 13 7 0.6276 -1.6532 6.3760 14 6 1.2518 -1.2505 7.5006 15 8 2.4430 -1.4551 7.6419 16 6 0.4965 -0.5682 8.5526 17 1 -0.5367 -0.2999 8.3882 18 6 1.1136 -0.2632 9.7722 19 7 2.3931 -0.4777 9.9286 20 14 0.1078 0.4505 11.1752 21 1 -0.3314 -0.6448 12.0766 22 1 0.9383 1.4165 11.9382 23 1 -1.0831 1.1472 10.6260 24 6 0.4428 -3.2906 4.5933 25 6 1.2426 -4.4224 3.9966 26 6 2.4975 -4.6565 4.8399 27 6 0.3937 -5.6953 3.9905 28 6 1.6536 -4.0760 2.5544 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2072 -2.1393 37 1 3.1300 -0.7215 -1.2491 38 1 3.5057 -1.2405 2.8941 39 1 3.5518 -2.7261 3.8730 40 1 2.6147 -0.6536 5.0705 41 1 1.2264 -0.7419 3.9651 42 1 -0.3220 -1.4905 6.2636 43 1 2.8205 -0.2667 10.7735 44 1 -0.2863 -3.6920 5.2971 45 1 -0.0758 -2.7532 3.7993 46 1 2.2082 -4.8954 5.8633 47 1 3.0675 -5.4857 4.4205 48 1 3.1109 -3.7555 4.8365 49 1 -0.5042 -5.5304 3.3952 50 1 0.9701 -6.5143 3.5601 51 1 0.1109 -5.9483 5.0123 52 1 2.4828 -4.7189 2.2590 53 1 0.8086 -4.2618 1.8913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870809019.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -134.723220 kcal Electronic energy + Delta-G solvation = -32570.100818 eV Core-core repulsion = 28441.296522 eV Total energy + Delta-G solvation = -4128.804296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25908 -40.92321 -39.07154 -37.88649 -36.20406 -35.63990 -34.66009 -34.47462 -32.26641 -29.34393 -28.37066 -28.32843 -28.28068 -28.01228 -27.47926 -25.41337 -23.37129 -22.30476 -21.19136 -20.27326 -19.83496 -19.10276 -18.63407 -17.93302 -17.42348 -17.35534 -16.90804 -16.43065 -15.97962 -15.91292 -15.53661 -15.41954 -14.90732 -14.80521 -14.58253 -14.45166 -14.22051 -14.15789 -13.77360 -13.53327 -13.34341 -13.19311 -13.09105 -13.00753 -12.90738 -12.83962 -12.81576 -12.78669 -12.58684 -12.47548 -12.41529 -12.26801 -12.12535 -12.01501 -11.82465 -11.73704 -11.53050 -11.34656 -11.12316 -10.92452 -10.79031 -9.88866 -9.72047 -9.33551 -8.27106 -6.81538 1.18099 1.39609 1.40299 1.55629 1.76137 2.25106 2.51031 2.81055 3.10950 3.56033 3.64528 3.70994 3.77760 3.82905 3.89054 3.94322 3.97617 4.17988 4.24131 4.34860 4.47031 4.47888 4.53546 4.61965 4.63929 4.68834 4.71865 4.75472 4.78412 4.80399 4.84600 4.88019 4.89346 4.97849 5.06503 5.11589 5.17877 5.20008 5.23308 5.28786 5.30455 5.33989 5.35437 5.41687 5.49303 5.53588 5.59466 5.93058 6.27100 6.28855 6.39189 6.90049 7.29205 7.59867 8.53782 8.71327 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003305 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.515818 B = 8470.491013 C = 9821.816786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 C -0.137 4.137 4 C -0.175 4.175 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.589 6.589 8 N -0.580 5.580 9 C 0.119 3.881 10 C -0.126 4.126 11 C 0.137 3.863 12 H 0.075 0.925 13 N -0.757 5.757 14 C 0.544 3.456 15 O -0.625 6.625 16 C -0.579 4.579 17 H 0.080 0.920 18 C 0.032 3.968 19 N -0.818 5.818 20 Si 0.993 3.007 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.099 4.099 25 C -0.065 4.065 26 C -0.156 4.156 27 C -0.132 4.132 28 C 0.139 3.861 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.387 0.613 43 H 0.273 0.727 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.058 0.942 52 H 0.087 0.913 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -3.870 -19.815 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 C -0.194 4.194 4 C -0.232 4.232 5 O -0.284 6.284 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.319 5.319 9 C -0.005 4.005 10 C -0.166 4.166 11 C 0.033 3.967 12 H 0.093 0.907 13 N -0.409 5.409 14 C 0.348 3.652 15 O -0.512 6.512 16 C -0.615 4.615 17 H 0.098 0.902 18 C -0.183 4.183 19 N -0.448 5.448 20 Si 0.812 3.188 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.176 1.176 24 C -0.137 4.137 25 C -0.067 4.067 26 C -0.213 4.213 27 C -0.189 4.189 28 C 0.019 3.981 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.219 0.781 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.096 0.904 51 H 0.077 0.923 52 H 0.105 0.895 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.896 -4.131 -19.911 20.424 hybrid contribution -0.702 0.653 0.974 1.367 sum -2.599 -3.478 -18.938 19.429 Atomic orbital electron populations 1.22454 0.94145 1.03715 1.03193 1.22405 0.94521 0.92634 0.81883 1.21883 1.02387 0.91159 1.03979 1.22435 1.01527 1.02265 0.96949 1.86372 1.71439 1.23294 1.47282 1.18241 0.78444 0.80783 0.82406 1.90841 1.42200 1.70924 1.44041 1.46713 1.52218 1.12334 1.20614 1.21653 0.92205 0.97454 0.89184 1.21450 0.99340 0.98613 0.97159 1.20007 0.95345 0.93127 0.88255 0.90745 1.46114 1.11753 1.64231 1.18843 1.18444 0.86656 0.78624 0.81491 1.90534 1.17494 1.62249 1.80925 1.21427 0.99314 1.41027 0.99764 0.90192 1.26866 0.95682 0.93601 1.02155 1.70178 1.12074 1.37279 1.25264 0.85084 0.78547 0.78425 0.76705 1.18828 1.19715 1.17562 1.21329 0.97597 0.95719 0.99077 1.20564 0.96162 0.96066 0.93874 1.22365 0.97275 1.02266 0.99367 1.21822 0.99356 0.95213 1.02539 1.22078 1.01725 0.77797 0.96520 0.92947 0.88920 0.91615 0.91269 0.87714 0.92154 0.91603 0.89030 0.92042 0.89316 0.88323 0.93626 0.93030 0.78093 0.91681 0.91166 0.92324 0.93762 0.90278 0.92146 0.91753 0.90422 0.92312 0.89497 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 8.37 71.98 0.60 -3.21 16 2 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 3 C -0.14 -2.26 8.85 71.98 0.64 -1.62 16 4 C -0.17 -3.36 8.37 71.98 0.60 -2.75 16 5 O -0.37 -10.11 8.56 -55.54 -0.48 -10.59 16 6 C 0.65 18.49 7.64 129.79 0.99 19.48 16 7 O -0.59 -18.01 11.16 19.81 0.22 -17.79 16 8 N -0.58 -15.31 2.24 -948.52 -2.12 -17.43 16 9 C 0.12 3.37 5.31 87.37 0.46 3.84 16 10 C -0.13 -4.52 5.19 29.39 0.15 -4.37 16 11 C 0.14 5.14 1.79 43.01 0.08 5.21 16 12 H 0.07 3.14 3.95 -2.39 -0.01 3.13 16 13 N -0.76 -34.11 4.88 -456.37 -2.23 -36.33 16 14 C 0.54 31.27 7.58 86.36 0.66 31.93 16 15 O -0.63 -40.77 14.55 -4.31 -0.06 -40.83 16 16 C -0.58 -33.05 9.54 24.83 0.24 -32.81 16 17 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 18 C 0.03 1.80 5.49 85.30 0.47 2.27 16 19 N -0.82 -49.88 11.85 21.84 0.26 -49.62 16 20 Si 0.99 41.33 29.56 68.60 2.03 43.36 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 24 C -0.10 -2.89 4.39 29.77 0.13 -2.76 16 25 C -0.07 -1.52 0.75 -52.56 -0.04 -1.56 16 26 C -0.16 -3.97 6.76 71.98 0.49 -3.48 16 27 C -0.13 -2.43 8.14 71.98 0.59 -1.85 16 28 C 0.14 3.11 4.99 86.47 0.43 3.54 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.71 5.88 -2.39 -0.01 1.70 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.58 5.88 -2.39 -0.01 1.57 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 2.41 7.25 -2.39 -0.02 2.40 16 39 H 0.10 2.66 5.21 -2.38 -0.01 2.65 16 40 H 0.05 1.99 7.95 -2.39 -0.02 1.97 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.39 15.68 8.59 -92.71 -0.80 14.89 16 43 H 0.27 15.10 8.29 -92.70 -0.77 14.33 16 44 H 0.07 2.08 7.64 -2.39 -0.02 2.06 16 45 H 0.06 1.73 7.48 -2.39 -0.02 1.71 16 46 H 0.04 1.31 7.89 -2.39 -0.02 1.29 16 47 H 0.08 1.56 8.13 -2.39 -0.02 1.54 16 48 H 0.06 1.75 3.16 -2.39 -0.01 1.74 16 49 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 50 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 52 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 53 H 0.09 2.13 6.77 -2.39 -0.02 2.11 16 Total: -1.00 -75.78 397.85 4.21 -71.58 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: 0.12 Total: 43.19 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.47 Total: 14.46 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -4.09 Total: -103.38 kcal Atomic # 8 Polarization: -68.89 SS G_CDS: -0.32 Total: -69.21 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -75.78 4.21 -71.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870809019.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.145 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds