Wall clock time and date at job start Sat Apr 11 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99948 * 2 1 4 4 C 1.50695 * 109.47103 * 270.00046 * 3 2 1 5 5 H 1.07998 * 120.00650 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99959 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99772 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00044 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47321 * 59.99839 * 8 6 4 10 10 H 1.48497 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46989 * 300.00013 * 8 6 4 12 12 C 1.34778 * 119.99685 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99705 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00107 * 359.97438 * 12 2 1 15 15 H 1.08994 * 112.84697 * 37.11796 * 14 12 2 16 16 C 1.53784 * 113.61175 * 168.42428 * 14 12 2 17 17 C 1.53957 * 87.10996 * 89.19008 * 16 14 12 18 18 H 1.09000 * 113.61227 * 270.84155 * 17 16 14 19 19 N 1.46497 * 113.66687 * 139.89174 * 17 16 14 20 20 C 1.34769 * 120.00308 * 107.55359 * 19 17 16 21 21 O 1.21508 * 119.99999 * 359.97438 * 20 19 17 22 22 O 1.34637 * 120.00185 * 180.02562 * 20 19 17 23 23 C 1.45200 * 117.00237 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47195 * 59.99546 * 23 22 20 25 25 C 1.52995 * 109.47416 * 179.97438 * 23 22 20 26 26 C 1.53007 * 109.47059 * 299.99783 * 23 22 20 27 27 C 1.53778 * 113.61531 * 265.92403 * 14 12 2 28 28 C 1.53004 * 113.61455 * 25.43212 * 27 14 12 29 29 C 1.52998 * 113.61468 * 156.25460 * 27 14 12 30 30 H 1.09005 * 109.46929 * 269.99888 * 1 2 3 31 31 H 1.09004 * 109.47349 * 29.99520 * 1 2 3 32 32 H 1.09004 * 109.47567 * 150.00050 * 1 2 3 33 33 H 1.09004 * 109.46926 * 30.00451 * 3 2 1 34 34 H 1.09003 * 109.47033 * 150.00236 * 3 2 1 35 35 H 0.97002 * 119.99950 * 180.02562 * 7 6 4 36 36 H 1.08999 * 113.61032 * 203.66642 * 16 14 12 37 37 H 1.08997 * 113.61428 * 334.48474 * 16 14 12 38 38 H 0.97003 * 119.99373 * 287.54513 * 19 17 16 39 39 H 1.08992 * 109.47047 * 60.00181 * 24 23 22 40 40 H 1.09006 * 109.47317 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.46798 * 300.00338 * 24 23 22 42 42 H 1.09000 * 109.47441 * 59.99680 * 25 23 22 43 43 H 1.09001 * 109.47306 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.46944 * 299.99551 * 25 23 22 45 45 H 1.09004 * 109.46842 * 59.99823 * 26 23 22 46 46 H 1.08993 * 109.47278 * 179.97438 * 26 23 22 47 47 H 1.08997 * 109.46645 * 300.00209 * 26 23 22 48 48 H 1.09009 * 109.46833 * 189.94569 * 28 27 14 49 49 H 1.08992 * 109.47017 * 69.94543 * 28 27 14 50 50 H 1.09003 * 109.46909 * 309.94289 * 28 27 14 51 51 H 1.09001 * 109.46701 * 298.46779 * 29 27 14 52 52 H 1.08993 * 109.47455 * 58.46770 * 29 27 14 53 53 H 1.09010 * 109.47204 * 178.47018 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.1398 3.5955 -4.1332 10 1 4.1802 4.7031 -3.4338 11 1 4.2393 2.3820 -4.1346 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.4798 -2.4382 -0.6063 16 6 2.2726 -3.6960 -0.2839 17 6 2.5129 -3.7758 1.2347 18 1 3.3668 -3.1889 1.5731 19 7 2.5181 -5.1441 1.7581 20 6 3.6768 -5.7128 2.1460 21 8 4.7172 -5.0909 2.0611 22 8 3.6816 -6.9705 2.6265 23 6 4.9656 -7.5192 3.0246 24 6 5.5689 -6.6535 4.1325 25 6 4.7724 -8.9463 3.5413 26 6 5.9087 -7.5359 1.8198 27 6 1.1645 -3.0562 1.4049 28 6 1.1680 -2.0022 2.5140 29 6 -0.0308 -4.0072 1.4926 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5138 35 1 4.0310 4.4435 -0.8503 36 1 1.7248 -4.5494 -0.6834 37 1 3.1688 -3.4618 -0.8583 38 1 1.6876 -5.6406 1.8256 39 1 4.8971 -6.6416 4.9907 40 1 6.5331 -7.0651 4.4310 41 1 5.7065 -5.6366 3.7646 42 1 4.3425 -9.5633 2.7524 43 1 5.7364 -9.3583 3.8397 44 1 4.1008 -8.9340 4.3997 45 1 6.0463 -6.5190 1.4521 46 1 6.8727 -7.9473 2.1187 47 1 5.4789 -8.1526 1.0306 48 1 1.1845 -2.4969 3.4852 49 1 0.2711 -1.3880 2.4342 50 1 2.0509 -1.3710 2.4126 51 1 -0.9438 -3.4672 1.2417 52 1 0.1081 -4.8310 0.7927 53 1 -0.1084 -4.4007 2.5063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874172706.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:49 Heat of formation + Delta-G solvation = -124.968199 kcal Electronic energy + Delta-G solvation = -31601.294388 eV Core-core repulsion = 27472.913101 eV Total energy + Delta-G solvation = -4128.381286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40634 -41.51985 -39.40001 -37.90293 -36.57167 -35.42538 -34.74272 -34.17379 -31.71865 -30.13121 -28.42877 -28.37676 -28.27749 -27.53763 -26.94542 -24.98495 -23.58809 -23.05042 -21.22083 -20.84053 -19.46257 -18.71676 -18.58843 -18.25223 -17.41661 -17.19972 -16.98568 -16.69126 -16.22794 -16.09907 -15.82238 -15.38754 -15.08470 -14.82957 -14.55511 -14.40882 -14.10514 -14.05322 -13.68691 -13.44645 -13.38631 -13.32956 -13.24968 -13.16261 -12.95189 -12.90430 -12.86940 -12.85491 -12.81442 -12.65680 -12.54889 -12.34768 -12.28956 -12.19627 -12.13576 -11.73899 -11.40601 -11.38102 -11.31652 -11.10545 -10.65469 -10.50216 -10.09813 -9.38476 -8.23247 -6.38370 1.15617 1.34434 1.39408 1.46475 1.74282 1.81285 2.30046 2.44846 3.05921 3.16678 3.21380 3.46010 3.63073 3.71739 3.76068 3.80422 3.95237 4.09784 4.16691 4.33502 4.40062 4.52148 4.60206 4.60504 4.61624 4.68814 4.75917 4.77451 4.82684 4.83583 4.87645 4.89258 4.92184 4.98965 5.01903 5.03093 5.07322 5.12614 5.15949 5.22854 5.27951 5.31517 5.31583 5.38972 5.54937 5.56357 5.60458 5.85654 6.05677 6.44986 6.69525 6.82393 7.27886 7.38819 7.53011 8.83509 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002600 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.541098 B =10764.814496 C =11636.725115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.604 5.604 3 C 0.261 3.739 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.514 3.486 13 O -0.600 6.600 14 C -0.123 4.123 15 H 0.141 0.859 16 C -0.128 4.128 17 C 0.147 3.853 18 H 0.073 0.927 19 N -0.680 5.680 20 C 0.641 3.359 21 O -0.600 6.600 22 O -0.363 6.363 23 C 0.125 3.875 24 C -0.182 4.182 25 C -0.132 4.132 26 C -0.182 4.182 27 C -0.049 4.049 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.024 0.976 34 H -0.009 1.009 35 H 0.267 0.733 36 H 0.131 0.869 37 H 0.046 0.954 38 H 0.421 0.579 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.015 0.985 51 H 0.091 0.909 52 H 0.080 0.920 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 -26.555 8.182 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.334 5.334 3 C 0.139 3.861 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.303 3.697 13 O -0.481 6.481 14 C -0.145 4.145 15 H 0.158 0.842 16 C -0.167 4.167 17 C 0.043 3.957 18 H 0.092 0.908 19 N -0.340 5.340 20 C 0.394 3.606 21 O -0.491 6.491 22 O -0.278 6.278 23 C 0.089 3.911 24 C -0.239 4.239 25 C -0.189 4.189 26 C -0.239 4.239 27 C -0.050 4.050 28 C -0.199 4.199 29 C -0.186 4.186 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.009 0.991 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.034 0.966 51 H 0.110 0.890 52 H 0.099 0.901 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.198 -26.133 8.243 28.905 hybrid contribution 0.898 1.184 -0.803 1.689 sum -8.300 -24.949 7.441 27.326 Atomic orbital electron populations 1.22021 0.77847 1.04047 1.02653 1.48076 1.08362 1.06007 1.70966 1.18700 0.90893 0.80571 0.95887 1.21680 1.36803 1.06475 0.93061 0.92817 1.25896 0.94930 0.96505 1.02050 1.70051 1.38930 1.14820 1.33144 0.85468 0.78951 0.77276 0.79128 1.18102 1.20355 1.20539 1.20703 0.87343 0.86141 0.75528 1.90665 1.16907 1.88016 1.52541 1.22463 1.00730 0.90282 1.00992 0.84171 1.23395 0.99599 0.97385 0.96294 1.22562 0.98834 0.80380 0.93969 0.90839 1.44620 1.07748 1.15296 1.66346 1.18448 0.84724 0.80777 0.76636 1.90953 1.32525 1.64969 1.60614 1.86292 1.38019 1.27327 1.76112 1.22404 0.79268 0.94910 0.94543 1.22486 1.02442 1.01005 0.97978 1.21865 1.04497 0.90420 1.02123 1.22484 1.00452 1.03106 0.97862 1.22179 0.95351 0.95542 0.91950 1.21825 1.01552 0.97994 0.98501 1.21700 0.94881 0.98144 1.03889 0.91013 0.91735 0.88390 0.95847 0.99074 0.92432 0.85085 0.93488 0.73938 0.91576 0.89146 0.92899 0.90820 0.88118 0.90833 0.92873 0.89168 0.91543 0.90823 0.89917 0.96560 0.88986 0.90131 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.19 127.77 1.30 3.48 16 2 N -0.60 -25.72 2.86 -851.12 -2.43 -28.15 16 3 C 0.26 14.49 5.16 85.63 0.44 14.93 16 4 C -0.54 -32.00 9.39 25.60 0.24 -31.75 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.00 0.29 5.46 84.66 0.46 0.76 16 7 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 8 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.51 21.75 5.12 87.66 0.45 22.19 16 13 O -0.60 -32.92 14.98 -3.02 -0.05 -32.96 16 14 C -0.12 -3.35 2.99 -11.01 -0.03 -3.39 16 15 H 0.14 2.75 6.33 -2.39 -0.02 2.74 16 16 C -0.13 -3.48 6.88 31.18 0.21 -3.27 16 17 C 0.15 4.16 3.30 45.58 0.15 4.31 16 18 H 0.07 2.97 6.95 -2.39 -0.02 2.95 16 19 N -0.68 -15.38 5.24 -567.33 -2.98 -18.36 16 20 C 0.64 18.19 8.06 129.79 1.05 19.23 16 21 O -0.60 -22.26 11.48 19.81 0.23 -22.03 16 22 O -0.36 -8.36 9.94 -55.47 -0.55 -8.91 16 23 C 0.13 2.44 1.13 -10.79 -0.01 2.43 16 24 C -0.18 -3.79 8.37 71.98 0.60 -3.18 16 25 C -0.13 -1.50 8.85 71.98 0.64 -0.87 16 26 C -0.18 -3.79 8.37 71.98 0.60 -3.18 16 27 C -0.05 -1.04 1.31 -51.65 -0.07 -1.11 16 28 C -0.14 -3.54 8.58 71.98 0.62 -2.92 16 29 C -0.13 -1.34 7.81 71.98 0.56 -0.78 16 30 H 0.07 1.68 6.95 -2.38 -0.02 1.66 16 31 H 0.06 1.97 8.07 -2.38 -0.02 1.95 16 32 H 0.10 2.01 5.97 -2.39 -0.01 2.00 16 33 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 34 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.13 2.39 7.64 -2.39 -0.02 2.37 16 37 H 0.05 1.69 7.62 -2.39 -0.02 1.67 16 38 H 0.42 6.17 6.95 -92.71 -0.64 5.53 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.05 1.53 5.88 -2.38 -0.01 1.51 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 1.54 5.88 -2.39 -0.01 1.52 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 49 H 0.08 1.75 6.86 -2.39 -0.02 1.73 16 50 H 0.02 0.55 6.94 -2.39 -0.02 0.53 16 51 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.08 0.59 6.72 -2.39 -0.02 0.57 16 53 H 0.08 0.66 8.11 -2.38 -0.02 0.64 16 Total: -1.00 -86.73 411.38 4.01 -82.72 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.26 Total: 20.33 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.22 Total: 16.89 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.12 Total: -104.06 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -0.37 Total: -63.91 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -86.73 4.01 -82.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874172706.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.251 kcal (2) G-P(sol) polarization free energy of solvation -86.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds